PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2pyyB_

Fold library id	PDB Header	Molecule	Title
c2pyyB_	PDB header: transport protein	Chain: B: PDB Molecule: ionotropic glutamate receptor bacterial	PDBTitle: crystal structure of the glur0 ligand-binding core from2 nostoc punctiforme in complex with (l)-glutamate

Links to external resources
Added to library: Tue Mar 16 12:05:11 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P L L V A T R V I P P F V L S N L S G F S I D L W R S I A T Q I G I E S K L I E Y S S V P E L I S A I K D N K V N L G I A A I S I T A E R E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B T T T B B
B S T
S S T T S S S S S
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q N F D F S L P I F A S G L Q I M V R N G D I R S I D D L P G K V V A T T A G S T A A T Y L R E H H I S V L E V P K I E E A Y K A L Q T K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S
S G G G
T T S T T S T T
S S T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A D A V V F D A P V L L F Y A A N E G K G K V E I V G S I L R E E S Y G I I L P N N S P Y R K P I N Q A L L N L K E N G T Y Q S L Y D K W F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T T T T T T T
T T
T T T S S

. . . . . . . .

Sequence D P K N S L E E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	L	L	V	A	T	R	V	I	P	P	F	V	L	S	N	L	S	G	F	S	I	D	L	W	R	S	I	A	T	Q	I	G	I	E	S	K	L	I	E	Y	S	S	V	P	E	L	I	S	A	I	K	D	N	K	V	N	L	G	I	A	A	I	S	I	T	A	E	R	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									B	T	T	T	B	B				B	S														T									S	S										T	T	S	S	S				S	S		B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	N	F	D	F	S	L	P	I	F	A	S	G	L	Q	I	M	V	R	N	G	D	I	R	S	I	D	D	L	P	G	K	V	V	A	T	T	A	G	S	T	A	A	T	Y	L	R	E	H	H	I	S	V	L	E	V	P	K	I	E	E	A	Y	K	A	L	Q	T	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S				S		S																S	G	G	G		T	T	S						T	T	S									T	T							S	S										T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	D	A	V	V	F	D	A	P	V	L	L	F	Y	A	A	N	E	G	K	G	K	V	E	I	V	G	S	I	L	R	E	E	S	Y	G	I	I	L	P	N	N	S	P	Y	R	K	P	I	N	Q	A	L	L	N	L	K	E	N	G	T	Y	Q	S	L	Y	D	K	W	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S														T	T	T	T	T	T	T																			T	T		T	T														T	S										S
	.	.	.	.	.	.	.	.
Sequence	D	P	K	N	S	L	E	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G