Phyre 2 alignment of P18472 with c3jqoV_

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Job Description | P18472
Confidence | 57.67% | Date | Thu Jan 5 11:37:00 GMT 2012
Rank | 3 | Aligned Residues | 23
% Identity | 22% | Template | c3jqoV_
PDB info | PDB header:transport protein | Chain: V: PDB Molecule:traf protein; | PDBTitle: crystal structure of the outer membrane complex of a type iv2 secretion system
Resolution | 2.60 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . |  | . | . | . | . | . | . | 110 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
Query Sequence |  | S | V | R | L | A | A | D | I | R | D | N | E | G | R | . | V | F | A | R | Q | G | E | V | M
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
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Template Sequence |  | S | C | R | V | S | Q | D | V | Y | S | A | D | G | L | V | R | L | I | D | K | G | S | W | V
Template Known Secondary structure |  |  |  |  |  |  | S |  |  |  |  | T | T | S |  | S |  |  |  |  | T | T |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 226 | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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