16/01/2012 16:32:43 : INFO  : Run start: Mon Jan 16 16:32:41 GMT 2012
16/01/2012 16:32:54 : INFO  : Initialised job
16/01/2012 16:32:58 : INFO  : Renaming log file 'phyre2_20120116_163239.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/5279f5cb5050d57d/phyre_20120116_163239.log'
16/01/2012 16:33:01 : INFO  : Initialised job:
Sequence
>batch____
MRCRGLIALLIWGQSVAAADLGTWGDLWPVKEPDMLTVIMQRLTALEQSGEMGRKMDAFK
ERVIRNSLRPPAVPGIGRTEKYGSRLFDPSVRLAADIRDNEGRVFARQGEVMNPLQYVPF
NQTLYFINGDDPAQVAWMKRQTPPTLESKIILVQGSIPEMQKSLDSRVYFDQNGVLCQRL
GIDQVPARVSAVPGDRFLKVEFIPAEEGRK

16/01/2012 16:33:03 : INFO  : Checked sequence
16/01/2012 16:33:10 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 16:33:12 : INFO  : PSI-BLAST 3 iterations
16/01/2012 16:34:32 : INFO  : PSI-BLAST 5 iterations
16/01/2012 16:35:30 : INFO  : Finished PSI-BLAST
16/01/2012 16:35:35 : INFO  : Running Buildali to generate a3m file
16/01/2012 16:43:37 : INFO  : Converting to HMM
16/01/2012 16:43:41 : INFO  : Calibrating HMM
16/01/2012 16:44:05 : INFO  : Searching HMM database
16/01/2012 16:48:02 : INFO  : Finished buildali
16/01/2012 16:48:05 : INFO  : Predicting secondary structure
16/01/2012 16:48:22 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 16:48:26 : INFO  : Predicting Disordered regions
16/01/2012 16:48:34 : INFO  : Predicted Disorder (Disopred)
16/01/2012 16:48:37 : INFO  : Running memsat_svm check
16/01/2012 16:54:28 : INFO  : Running memsat_svm full
16/01/2012 16:56:27 : INFO  : Predicted Transmembrane (memsat_svm) ID '5279f5cb5050d57d'
16/01/2012 16:56:30 : INFO  : Initialising fold library search
16/01/2012 16:56:37 : INFO  : Initialised search input
16/01/2012 16:56:42 : INFO  : Building Ensemble models
16/01/2012 16:56:49 : INFO  : Building hh.c2fu3A_.model.1.pdb
16/01/2012 16:57:21 : INFO  : Building hh.c2bhvC_.model.2.pdb
16/01/2012 16:57:47 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5279f5cb5050d57d/hh.c2bhvC_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5279f5cb5050d57d/c2bhvC_.2.pdb
16/01/2012 16:57:55 : INFO  : Building hh.c3emxB_.model.3.pdb
16/01/2012 16:58:20 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5279f5cb5050d57d/hh.c3emxB_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5279f5cb5050d57d/c3emxB_.6.pdb
16/01/2012 16:58:28 : INFO  : Building hh.c2qsiB_.model.4.pdb
16/01/2012 16:58:53 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5279f5cb5050d57d/hh.c2qsiB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5279f5cb5050d57d/c2qsiB_.8.pdb
16/01/2012 16:59:01 : INFO  : Building c2fu3A_.1.pdb
16/01/2012 16:59:32 : INFO  : Building c2bhvC_.2.pdb
16/01/2012 17:00:03 : INFO  : Building c3jqoV_.3.pdb
16/01/2012 17:00:34 : INFO  : Building d2gtta1.4.pdb
16/01/2012 17:01:07 : INFO  : Building d2gica1.5.pdb
16/01/2012 17:01:39 : INFO  : Building c3emxB_.6.pdb
16/01/2012 17:02:09 : INFO  : Building c2nqqA_.7.pdb
16/01/2012 17:02:39 : INFO  : Building c2qsiB_.8.pdb
16/01/2012 17:03:08 : INFO  : Building c3e7hA_.9.pdb
16/01/2012 17:03:38 : INFO  : Building d1j08a2.10.pdb
16/01/2012 17:04:08 : INFO  : Building d2hfda1.11.pdb
16/01/2012 17:04:38 : INFO  : Building c2yjpB_.12.pdb
16/01/2012 17:05:09 : INFO  : Building d1v58a1.13.pdb
16/01/2012 17:05:38 : INFO  : Building d1woua_.14.pdb
16/01/2012 17:06:07 : INFO  : Building d1v9wa_.15.pdb
16/01/2012 17:06:38 : INFO  : Building d1hyua4.16.pdb
16/01/2012 17:07:09 : INFO  : Building d1nhoa_.17.pdb
16/01/2012 17:07:39 : INFO  : Building d1syra_.18.pdb
16/01/2012 17:08:08 : INFO  : Building d1zmaa1.19.pdb
16/01/2012 17:08:36 : INFO  : Building c2fgxA_.20.pdb
16/01/2012 17:11:11 : INFO  : Finished HH model building
16/01/2012 17:11:15 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 17:14:28 : INFO  : html domain output complete ID '5279f5cb5050d57d'
16/01/2012 17:24:26 : INFO  : Run end  : Mon Jan 16 17:24:24 GMT 2012
