Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	E	P	L	D	L	N	Q	L	A	Q	K	I	K	Q	W	G	L	E	L	G	F	Q	Q	V	G	I	T	D	T	D	L	S	E	S	E	P	K	L	Q	A	W	L	D	K	Q	Y	H	G	E	M	D	W	M	A	R	H	G	M
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	R	A	R	P	H	E	L	L	P	G	T	L	R	V	I	S	V	R	M	N	Y	L	P	A	N	A	A	F	A	S	T	L	K	N	P	K	L	G	Y	V	S	R	Y	A	L	G	R	D	Y	H	K	L	L	R	N	R	L	K	K
Secondary structure
SS confidence
Disorder																								?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	G	E	M	I	Q	Q	H	C	V	S	L	N	F	R	P	F	V	D	S	A	P	I	L	E	R	P	L	A	E	K	A	G	L	G	W	T	G	K	H	S	L	I	L	N	R	E	A	G	S	F	F	F	L	G	E	L	L	V	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	P	L	P	V	D	Q	P	V	E	E	G	C	G	K	C	V	A	C	M	T	I	C	P	T	G	A	I	V	E	P	Y	T	V	D	A	R	R	C	I	S	Y	L	T	I	E	L	E	G	A	I	P	E	E	L	R	P	L	M	G
Secondary structure
SS confidence
Disorder																														?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		N	R	I	Y	G	C	D	D	C	Q	L	I	C	P	W	N	R	Y	S	Q	L	T	T	E	E	D	F	S	P	R	K	P	L	H	A	P	E	L	I	E	L	F	A	W	S	E	E	K	F	L	K	V	T	E	G	S	A	I	R	R
Secondary structure
SS confidence
Disorder																																		?	?									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		I	G	H	L	R	W	L	R	N	I	A	V	A	L	G	N	A	P	W	D	E	T	I	L	T	A	L	E	S	R	K	G	E	H	P	L	L	D	E	H	I	A	W	A	I	A	Q	Q	I	E	R	R	N	A	C	I	V	E	V	Q
Secondary structure
SS confidence
Disorder																																																				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Sequence		L	P	K	K	Q	R	L	V	R	V	I	E	K	G	L	P	R	D	A
Secondary structure
SS confidence
Disorder					?									?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1hfe chain L Region: 171 - 378 Aligned: 178 Modelled: 184 Confidence: 98.4% Identity: 18% PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans Phyre2 PDB 1gx7 chain A Region: 190 - 378 Aligned: 161 Modelled: 165 Confidence: 98.2% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase Phyre2 PDB 2fug chain 9 domain 1 Region: 183 - 256 Aligned: 50 Modelled: 50 Confidence: 98.2% Identity: 34% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2fug chain G Region: 183 - 256 Aligned: 50 Modelled: 50 Confidence: 98.2% Identity: 34% PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Phyre2 PDB 2ivf chain B Region: 189 - 257 Aligned: 45 Modelled: 45 Confidence: 98.1% Identity: 44% PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum Phyre2 PDB 2zvs chain B Region: 189 - 256 Aligned: 50 Modelled: 50 Confidence: 98.0% Identity: 32% PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli Phyre2 PDB 1rgv chain A Region: 189 - 256 Aligned: 50 Modelled: 50 Confidence: 98.0% Identity: 34% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Short-chain ferredoxins Phyre2 PDB 2fgo chain A Region: 189 - 266 Aligned: 60 Modelled: 60 Confidence: 98.0% Identity: 32% PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa Phyre2 PDB 7fd1 chain A Region: 189 - 256 Aligned: 44 Modelled: 44 Confidence: 97.9% Identity: 30% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 PDB 1gth chain D Region: 190 - 256 Aligned: 43 Modelled: 43 Confidence: 97.9% Identity: 35% PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Phyre2 PDB 1y5i chain B domain 1 Region: 189 - 257 Aligned: 45 Modelled: 45 Confidence: 97.9% Identity: 38% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2c42 chain A domain 5 Region: 175 - 259 Aligned: 84 Modelled: 85 Confidence: 97.7% Identity: 23% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1blu chain A Region: 189 - 256 Aligned: 50 Modelled: 50 Confidence: 97.7% Identity: 34% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Short-chain ferredoxins Phyre2 PDB 1kqf chain B Region: 191 - 256 Aligned: 42 Modelled: 42 Confidence: 97.7% Identity: 38% PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli Phyre2 PDB 1fca chain A Region: 189 - 256 Aligned: 44 Modelled: 44 Confidence: 97.7% Identity: 41% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Short-chain ferredoxins Phyre2 PDB 1clf chain A Region: 189 - 256 Aligned: 44 Modelled: 44 Confidence: 97.7% Identity: 36% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Short-chain ferredoxins Phyre2 PDB 3c8y chain A domain 3 Region: 190 - 256 Aligned: 60 Modelled: 67 Confidence: 97.6% Identity: 17% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1jb0 chain C Region: 189 - 256 Aligned: 44 Modelled: 44 Confidence: 97.6% Identity: 32% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 PDB 1dur chain A Region: 189 - 256 Aligned: 44 Modelled: 44 Confidence: 97.6% Identity: 39% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Short-chain ferredoxins Phyre2 PDB 2gmh chain A Region: 193 - 270 Aligned: 54 Modelled: 54 Confidence: 97.5% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone Phyre2 PDB 2fug chain C Region: 146 - 254 Aligned: 75 Modelled: 75 Confidence: 96.0% Identity: 25% PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Phyre2 1 c1hfeL_ 2 c1gx7A_ 3 d2fug91 4 c2fugG_ 5 c2ivfB_ 6 c2zvsB_ 7 d1rgva_ 8 c2fgoA_ 9 d7fd1a_ 10 c1gthD_ 11 d1y5ib1 12 d2c42a5 13 d1blua_ 14 c1kqfB_ 15 d1fcaa_ 16 d1clfa_ 17 d3c8ya3 18 d1jb0c_ 19 d1dura_ 20 c2gmhA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 c2fugC_ 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1hfeL_ 98.4 18 PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans 2 c1gx7A_ 98.2 19 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase 3 d2fug91 98.2 34 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 4 c2fugG_ 98.2 34 PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 5 c2ivfB_ 98.1 44 PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 6 c2zvsB_ 98.0 32 PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli 7 d1rgva_ 98.0 34 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 8 c2fgoA_ 98.0 32 PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa 9 d7fd1a_ 97.9 30 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 10 c1gthD_ 97.9 35 PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil 11 d1y5ib1 97.9 38 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 12 d2c42a5 97.7 23 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 13 d1blua_ 97.7 34 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 14 c1kqfB_ 97.7 38 PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli 15 d1fcaa_ 97.7 41 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 16 d1clfa_ 97.7 36 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 17 d3c8ya3 97.6 17 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 18 d1jb0c_ 97.6 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 19 d1dura_ 97.6 39 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 20 c2gmhA_ 97.5 19 PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone 21 d1kqfb1 not modelled 97.5 41 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 22 d1hfel2 not modelled 97.5 40 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 23 d1bc6a_ not modelled 97.5 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 24 c1ti2F_ not modelled 97.5 23 PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici 25 d2gmha3 not modelled 97.4 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:ETF-QO domain-like 26 c2v4jE_ not modelled 97.4 33 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 27 d1h98a_ not modelled 97.4 30 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 28 c3c7bA_ not modelled 97.4 39 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 29 d2fdna_ not modelled 97.4 41 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 30 c3c7bE_ not modelled 97.4 37 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 31 d1jnrb_ not modelled 97.4 42 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 32 c2v2kB_ not modelled 97.4 28 PDB header:electron transport Chain: B: PDB Molecule:ferredoxin; PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis 33 c2c3yA_ not modelled 97.4 30 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus 34 d1xera_ not modelled 97.3 26 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Archaeal ferredoxins 35 c3gyxJ_ not modelled 97.1 44 PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas 36 d1gtea5 not modelled 97.1 34 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 37 c2v4jA_ not modelled 97.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 38 c2vpyB_ not modelled 96.9 23 PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) 39 d3c7bb1 not modelled 96.9 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 40 c1c4cA_ not modelled 96.8 11 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum 41 d1te4a_ not modelled 96.7 13 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:PBS lyase HEAT-like repeat 42 d1h0hb_ not modelled 96.6 19 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 43 d2bs2b1 not modelled 96.3 19 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 44 d1kf6b1 not modelled 96.2 19 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 45 c3ltjA_ not modelled 96.2 15 PDB header:protein binding Chain: A: PDB Molecule:alpharep-4; PDBTitle: structure of a new family of artificial alpha helicoidal repeat2 proteins (alpha-rep) based on thermostable heat-like repeats 46 d1vlfn2 not modelled 96.1 14 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 47 c2fugC_ 96.0 25 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 48 d1nekb1 not modelled 96.0 17 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 49 c3l9tA_ not modelled 95.9 14 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein smu.31; PDBTitle: the crystal structure of smu.31 from streptococcus mutans ua159 50 d2fug34 not modelled 95.7 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 51 c1nekB_ not modelled 95.3 20 PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound 52 c2b76N_ not modelled 95.2 19 PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation 53 c3cf4A_ not modelled 95.1 23 PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 54 c2bs2E_ not modelled 94.9 23 PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes 55 d1oyza_ not modelled 94.7 11 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:PBS lyase HEAT-like repeat 56 c2h89B_ not modelled 94.0 23 PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound 57 d1vjwa_ not modelled 92.8 19 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 58 d1ibrb_ not modelled 92.1 19 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Armadillo repeat 59 d1iqza_ not modelled 92.0 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 60 d1sj1a_ not modelled 91.9 17 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 61 c3bk7A_ not modelled 90.8 28 PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii 62 d2v4jb1 not modelled 90.2 42 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 63 d1v18a1 not modelled 89.9 24 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Armadillo repeat 64 c3nmwA_ not modelled 88.4 19 PDB header:cell adhesion/cell cycle Chain: A: PDB Molecule:apc variant protein; PDBTitle: crytal structure of armadillo repeats domain of apc 65 c3ifqB_ not modelled 87.0 15 PDB header:cell adhesion Chain: B: PDB Molecule:plakoglobin; PDBTitle: interction of plakoglobin and beta-catenin with desmosomal2 cadherins 66 c1dwlA_ not modelled 86.8 24 PDB header:electron transfer Chain: A: PDB Molecule:ferredoxin i; PDBTitle: the ferredoxin-cytochrome complex using heteronuclear nmr2 and docking simulation 67 d1fxra_ not modelled 86.6 17 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 68 c1m5nS_ not modelled 85.2 19 PDB header:protein transport Chain: S: PDB Molecule:importin beta-1 subunit; PDBTitle: crystal structure of heat repeats (1-11) of importin b2 bound to the non-classical nls(67-94) of pthrp 69 c3c5wA_ not modelled 84.5 11 PDB header:hydrolase Chain: A: PDB Molecule:pp2a a subunit; PDBTitle: complex between pp2a-specific methylesterase pme-1 and pp2a core2 enzyme 70 c3nmzB_ not modelled 84.0 19 PDB header:cell adhesion/cell cycle Chain: B: PDB Molecule:apc variant protein; PDBTitle: crytal structure of apc complexed with asef 71 c3l6yA_ not modelled 83.8 6 PDB header:cell adhesion Chain: A: PDB Molecule:catenin delta-1; PDBTitle: crystal structure of p120 catenin in complex with e-cadherin 72 d1xm9a1 not modelled 83.5 9 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Plakophilin 1 helical region 73 c1lshA_ not modelled 83.0 23 PDB header:lipid binding protein Chain: A: PDB Molecule:lipovitellin (lv-1n, lv-1c); PDBTitle: lipid-protein interactions in lipovitellin 74 c3b2aA_ not modelled 82.8 10 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the archaeal heat-like repeats protein ton_19372 from thermococcus onnurineus na1 75 d1lsha1 not modelled 82.5 25 Fold:alpha-alpha superhelix Superfamily:Lipovitellin-phosvitin complex, superhelical domain Family:Lipovitellin-phosvitin complex, superhelical domain 76 c3somO_ not modelled 81.8 16 PDB header:oxidoreductase Chain: O: PDB Molecule:methylmalonic aciduria and homocystinuria type c protein; PDBTitle: crystal structure of human mmachc 77 d2v4ja1 not modelled 81.4 29 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 78 c2z6hA_ not modelled 79.4 13 PDB header:cell adhesion Chain: A: PDB Molecule:catenin beta-1; PDBTitle: crystal structure of beta-catenin armadillo repeat region2 and its c-terminal domain 79 d3c7ba1 not modelled 79.0 48 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 80 c2vdcI_ not modelled 77.5 22 PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. 81 c3t7uA_ not modelled 77.2 17 PDB header:cell adhesion Chain: A: PDB Molecule:adenomatous polyposis coli protein; PDBTitle: a new crytal structure of apc-arm 82 c2z6gA_ not modelled 74.9 21 PDB header:cell adhesion Chain: A: PDB Molecule:b-catenin; PDBTitle: crystal structure of a full-length zebrafish beta-catenin 83 d1jdha_ not modelled 73.0 21 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Armadillo repeat 84 d1t06a_ not modelled 72.4 5 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:BC3264-like 85 d1xqra1 not modelled 70.8 16 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:HspBP1 domain 86 c2db0B_ not modelled 68.9 16 PDB header:protein binding Chain: B: PDB Molecule:253aa long hypothetical protein; PDBTitle: crystal structure of ph0542 87 d1gw5b_ not modelled 65.0 16 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Clathrin adaptor core protein 88 d1gtea1 not modelled 59.4 29 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Dihydropyrimidine dehydrogenase, N-terminal domain 89 c1xqrA_ not modelled 59.1 17 PDB header:chaperone Chain: A: PDB Molecule:hspbp1 protein; PDBTitle: crystal structure of the hspbp1 core domain 90 c1g8jC_ not modelled 58.6 17 PDB header:oxidoreductase Chain: C: PDB Molecule:arsenite oxidase; PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis 91 c1w63A_ not modelled 57.5 15 PDB header:endocytosis Chain: A: PDB Molecule:adapter-related protein complex 1 gamma 1 PDBTitle: ap1 clathrin adaptor core 92 c3bctA_ not modelled 51.5 13 PDB header:armadillo repeat Chain: A: PDB Molecule:beta-catenin; PDBTitle: the armadillo repeat region from murine beta-catenin 93 d1b3ua_ not modelled 46.1 12 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:HEAT repeat 94 c2hcuA_ not modelled 45.4 50 PDB header:lyase Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit; PDBTitle: crystal structure of smu.1381 (or leud) from streptococcus2 mutans 95 c3h5jA_ not modelled 41.3 33 PDB header:lyase Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit; PDBTitle: leud_1-168 small subunit of isopropylmalate isomerase (rv2987c) from2 mycobacterium tuberculosis 96 d1yu8x1 not modelled 41.1 19 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 97 c2jkrL_ not modelled 37.6 10 PDB header:endocytosis Chain: L: PDB Molecule:ap-2 complex subunit alpha-2; PDBTitle: ap2 clathrin adaptor core with dileucine peptide rm(2 phosphos)qikrllse 98 c2k6nA_ not modelled 37.6 12 PDB header:structural protein Chain: A: PDB Molecule:supervillin; PDBTitle: solution structure of human supervillin headpiece, minimized2 average 99 d1unda_ not modelled 37.3 19 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 100 d1unca_ not modelled 36.4 19 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 101 d2i9ca1 not modelled 36.4 12 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:RPA1889-like 102 c3q3wB_ not modelled 35.9 33 PDB header:transferase Chain: B: PDB Molecule:3-isopropylmalate dehydratase small subunit; PDBTitle: isopropylmalate isomerase small subunit from campylobacter jejuni. 103 c2l1lB_ not modelled 35.0 12 PDB header:nuclear protein Chain: B: PDB Molecule:exportin-1; PDBTitle: nmr solution structure of the phi0 pki nes peptide in complex with2 crm1-rangtp 104 d1yu5x1 not modelled 34.3 19 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 105 d1ee4a_ not modelled 33.5 13 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Armadillo repeat 106 c2fugA_ not modelled 31.8 40 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 107 d1ujsa_ not modelled 30.3 27 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 108 c1ovxB_ not modelled 30.3 40 PDB header:metal binding protein Chain: B: PDB Molecule:atp-dependent clp protease atp-binding subunit clpx; PDBTitle: nmr structure of the e. coli clpx chaperone zinc binding domain dimer 109 c2l3xA_ not modelled 29.8 31 PDB header:protein binding Chain: A: PDB Molecule:ablim2 protein; PDBTitle: villin head piece domain of human ablim2 110 d2ds5a1 not modelled 29.5 40 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:ClpX chaperone zinc binding domain 111 c2qk1A_ not modelled 28.8 8 PDB header:protein binding Chain: A: PDB Molecule:protein stu2; PDBTitle: structural basis of microtubule plus end tracking by2 xmap215, clip-170 and eb1 112 d1qzpa_ not modelled 28.3 31 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 113 d1ny8a_ not modelled 28.1 12 Fold:Alpha-lytic protease prodomain-like Superfamily:BolA-like Family:BolA-like 114 d1sfla_ not modelled 24.5 18 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 115 c2w3cA_ not modelled 22.5 0 PDB header:transport protein Chain: A: PDB Molecule:general vesicular transport factor p115; PDBTitle: globular head region of the human general vesicular2 transport factor p115 116 c2yswB_ not modelled 22.5 26 PDB header:lyase Chain: B: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystal structure of the 3-dehydroquinate dehydratase from aquifex2 aeolicus vf5 117 d2q22a1 not modelled 22.4 12 Fold:Ava3019-like Superfamily:Ava3019-like Family:Ava3019-like 118 d1x3zb1 not modelled 22.1 32 Fold:XPC-binding domain Superfamily:XPC-binding domain Family:XPC-binding domain 119 d1lrva_ not modelled 20.7 16 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Leucine-rich repeat variant 120 c2c1tA_ not modelled 20.6 13 PDB header:protein transport/membrane protein Chain: A: PDB Molecule:importin alpha subunit; PDBTitle: structure of the kap60p:nup2 complex

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0