Email l.a.kelley@imperial.ac.uk Description P0ADN2 Date Thu Jan 5 11:21:25 GMT 2012 Unique Job ID 3d423dd00147618d

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1b74a1 41.0 30 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 2 c2z7bA_ 39.1 15 PDB header:lyase Chain: A: PDB Molecule:mlr6791 protein; PDBTitle: crystal structure of mesorhizobium loti 3-hydroxy-2-methylpyridine-4,2 5-dicarboxylate decarboxylase 3 c3e0dA_ 30.7 28 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase iii subunit alpha; PDBTitle: insights into the replisome from the crystral structure of2 the ternary complex of the eubacterial dna polymerase iii3 alpha-subunit 4 d2efva1 28.8 22 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:MJ0366-like 5 c2jfnA_ 25.8 50 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of escherichia coli glutamate racemase2 in complex with l-glutamate and activator udp-murnac-ala 6 c2ohoA_ 23.4 30 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: structural basis for glutamate racemase inhibitor 7 d1or7c_ 23.4 19 Fold:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA Superfamily:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA Family:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA 8 c1or7C_ 23.4 19 PDB header:transcription Chain: C: PDB Molecule:sigma-e factor negative regulatory protein; PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea 9 c2jfoB_ 22.7 30 PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of enterococcus faecalis glutamate2 racemase in complex with d- and l-glutamate 10 c3pt8B_ 21.1 9 PDB header:oxygen transport Chain: B: PDB Molecule:hemoglobin iii; PDBTitle: structure of hbii-iii-cn from lucina pectinata at ph 5.0 11 c2qdjA_ 20.1 32 PDB header:antitumor protein Chain: A: PDB Molecule:retinoblastoma-associated protein; PDBTitle: crystal structure of the retinoblastoma protein n-domain2 provides insight into tumor suppression, ligand3 interaction and holoprotein architecture 12 c3outC_ 19.8 30 PDB header:isomerase Chain: C: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase from francisella tularensis2 subsp. tularensis schu s4 in complex with d-glutamate. 13 c2jfzB_ 19.7 40 PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of helicobacter pylori glutamate racemase2 in complex with d-glutamate and an inhibitor 14 c3hfrA_ 17.4 30 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase from listeria monocytogenes 15 c2jfqA_ 17.2 30 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of staphylococcus aureus glutamate2 racemase in complex with d-glutamate 16 c2dwuA_ 16.9 40 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase isoform race1 from bacillus2 anthracis 17 c2gzmB_ 16.7 30 PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of the glutamate racemase from bacillus2 anthracis 18 c1b74A_ 16.7 30 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: glutamate racemase from aquifex pyrophilus 19 d1pl8a2 16.6 20 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 20 c1zuwA_ 15.5 40 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase 1; PDBTitle: crystal structure of b.subtilis glutamate racemase (race) with d-glu 21 d1uwya2 not modelled 14.5 16 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Pancreatic carboxypeptidases 22 c2qfiB_ not modelled 14.4 9 PDB header:transport protein Chain: B: PDB Molecule:ferrous-iron efflux pump fief; PDBTitle: structure of the zinc transporter yiip 23 d1skza1 not modelled 14.0 50 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Leech antihemostatic proteins Family:Huristasin-like 24 d2qfia2 not modelled 13.7 9 Fold:Cation efflux protein transmembrane domain-like Superfamily:Cation efflux protein transmembrane domain-like Family:Cation efflux protein transmembrane domain-like 25 c3ajfA_ not modelled 11.4 19 PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: structural insigths into dsrna binding and rna silencing suppression2 by ns3 protein of rice hoja blanca tenuivirus 26 d1ckma1 not modelled 11.3 8 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain 27 c2kvsA_ not modelled 11.3 43 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mw0776; PDBTitle: nmr solution structure of q7a1e8 protein from staphylococcus2 aureus: northeast structural genomics consortium target:3 zr215 28 c3r6uA_ not modelled 10.9 7 PDB header:transport protein Chain: A: PDB Molecule:choline-binding protein; PDBTitle: crystal structure of choline binding protein opubc from bacillus2 subtilis 29 d2ea9a1 not modelled 9.6 31 Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like 30 c3d9oB_ not modelled 9.6 8 PDB header:transcription Chain: B: PDB Molecule:rna-binding protein 16; PDBTitle: snapshots of the rna processing factor scaf8 bound to different2 phosphorylated forms of the carboxy-terminal domain of rna-polymerase3 ii 31 c2bnlE_ not modelled 9.5 12 PDB header:stress-response Chain: E: PDB Molecule:modulator protein rsbr; PDBTitle: the structure of the n-terminal domain of rsbr 32 c3fp5A_ not modelled 9.4 9 PDB header:lipid binding protein Chain: A: PDB Molecule:acyl-coa binding protein; PDBTitle: crystal structure of acbp from moniliophthora perniciosa 33 c1vjqB_ not modelled 9.3 25 PDB header:structural genomics, de novo protein Chain: B: PDB Molecule:designed protein; PDBTitle: designed protein based on backbone conformation of2 procarboxypeptidase-a (1aye) with sidechains chosen for maximal3 predicted stability. 34 d2h28a1 not modelled 9.2 28 Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like 35 c3dofB_ not modelled 8.8 5 PDB header:signaling protein/hydrolase Chain: B: PDB Molecule:adp-ribosylation factor-like protein 2-binding PDBTitle: complex of arl2 and bart, crystal form 2 36 c2hnhA_ not modelled 8.8 17 PDB header:transferase Chain: A: PDB Molecule:dna polymerase iii alpha subunit; PDBTitle: crystal structure of the catalytic alpha subunit of e. coli2 replicative dna polymerase iii 37 c2jzfA_ not modelled 8.7 50 PDB header:viral protein Chain: A: PDB Molecule:replicase polyprotein 1ab; PDBTitle: nmr conformer closest to the mean coordinates of the domain 513-651 of2 the sars-cov nonstructural protein nsp3 38 c2kqvA_ not modelled 8.4 13 PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: sars coronavirus-unique domain (sud): three-domain molecular2 architecture in solution and rna binding. i: structure of the sud-m3 domain of sud-mc 39 d2ixoa1 not modelled 8.4 27 Fold:PTPA-like Superfamily:PTPA-like Family:PTPA-like 40 d2fmma1 not modelled 8.2 71 Fold:SH3-like barrel Superfamily:Chromo domain-like Family:Chromo domain 41 c2i6oA_ not modelled 7.9 26 PDB header:hydrolase Chain: A: PDB Molecule:sulfolobus solfataricus protein tyrosine PDBTitle: crystal structure of the complex of the archaeal sulfolobus2 ptp-fold phosphatase with phosphopeptides n-g-(p)y-k-n 42 d1e3ja2 not modelled 7.9 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 43 d1nb5i_ not modelled 7.4 20 Fold:Cystatin-like Superfamily:Cystatin/monellin Family:Cystatins 44 c2k0sA_ not modelled 7.0 5 PDB header:structural protein Chain: A: PDB Molecule:adp-ribosylation factor-like protein 2-binding PDBTitle: solution nmr structure of protein bc066483 45 d2inwa1 not modelled 7.0 28 Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like 46 d1nxza2 not modelled 6.8 27 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 47 c3sb1B_ not modelled 6.8 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hydrogenase expression protein; PDBTitle: hydrogenase expression protein huph from thiobacillus denitrificans2 atcc 25259 48 c3s4oB_ not modelled 6.8 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein tyrosine phosphatase-like protein; PDBTitle: protein tyrosine phosphatase (putative) from leishmania major 49 d1hvxa1 not modelled 6.4 28 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 50 d2di0a1 not modelled 6.3 18 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain 51 c2wsc1_ not modelled 6.3 26 PDB header:photosynthesis Chain: 1: PDB Molecule:at3g54890; PDBTitle: improved model of plant photosystem i 52 d1eg3a2 not modelled 6.2 29 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 53 d1dwka2 not modelled 6.2 23 Fold:Cyanase C-terminal domain Superfamily:Cyanase C-terminal domain Family:Cyanase C-terminal domain 54 c1uwyA_ not modelled 6.1 16 PDB header:hydrolase Chain: A: PDB Molecule:carboxypeptidase m; PDBTitle: crystal structure of human carboxypeptidase m 55 d1p16a1 not modelled 6.1 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain 56 d1k18a_ not modelled 6.0 60 Fold:Zinc finger domain of DNA polymerase-alpha Superfamily:Zinc finger domain of DNA polymerase-alpha Family:Zinc finger domain of DNA polymerase-alpha 57 c1hn3A_ not modelled 5.8 26 PDB header:antitumor protein Chain: A: PDB Molecule:p19 arf protein; PDBTitle: solution structure of the n-terminal 37 amino acids of the2 mouse arf tumor suppressor protein 58 c1ztoA_ not modelled 5.7 23 PDB header:potassium channel Chain: A: PDB Molecule:potassium channel protein rck4; PDBTitle: inactivation gate of potassium channel rck4, nmr, 82 structures 59 c3kw2A_ not modelled 5.7 33 PDB header:transferase Chain: A: PDB Molecule:probable r-rna methyltransferase; PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis 60 c1t8jA_ not modelled 5.6 50 PDB header:de novo protein Chain: A: PDB Molecule:bba5; PDBTitle: nmr structure of bba5, a compact, independently folded bba2 motif 61 d2fmla1 not modelled 5.5 75 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Nudix-associated domain 62 c1y32A_ not modelled 5.5 100 PDB header:unknown function Chain: A: PDB Molecule:humanin; PDBTitle: nmr structure of humanin in 30% tfe solution 63 c2z0vA_ not modelled 5.4 15 PDB header:endocytosis Chain: A: PDB Molecule:sh3-containing grb2-like protein 3; PDBTitle: crystal structure of bar domain of endophilin-iii 64 d1r9ja3 not modelled 5.4 19 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Transketolase C-terminal domain-like 65 c1cpbB_ not modelled 5.4 20 PDB header:hydrolase (c-terminal peptidase) Chain: B: PDB Molecule:carboxypeptidase b; PDBTitle: structure of carboxypeptidase b at 2.8 angstroms resolution 66 c3entB_ not modelled 5.4 38 PDB header:structural protein Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of nitrollin, a betagamma-crystallin from2 nitrosospira multiformis-in alternate space group (p65) 67 d2j7ja3 not modelled 5.4 20 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 68 c2egwB_ not modelled 5.3 40 PDB header:rna methyltransferase Chain: B: PDB Molecule:upf0088 protein aq_165; PDBTitle: crystal structure of rrna methyltransferase with sah ligand 69 c2bn8A_ not modelled 5.3 42 PDB header:cell cycle protein Chain: A: PDB Molecule:cell division activator ceda; PDBTitle: solution structure and interactions of the e.coli cell2 division activator protein ceda 70 c3ulxA_ not modelled 5.3 32 PDB header:dna binding protein Chain: A: PDB Molecule:stress-induced transcription factor nac1; PDBTitle: crystal structural of the conserved domain of rice stress-responsive2 nac1 71 d2ptfa1 not modelled 5.2 15 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:MTH863-like 72 c3aqoD_ not modelled 5.2 21 PDB header:membrane protein Chain: D: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: structure and function of a membrane component secdf that enhances2 protein export 73 d1ut7a_ not modelled 5.1 29 Fold:NAC domain Superfamily:NAC domain Family:NAC domain 74 c2boaB_ not modelled 5.1 20 PDB header:hydrolase Chain: B: PDB Molecule:carboxypeptidase a4; PDBTitle: human procarboxypeptidase a4.