PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2qdjA_

Fold library id	PDB Header	Molecule	Title
c2qdjA_	PDB header: antitumor protein	Chain: A: PDB Molecule: retinoblastoma-associated protein;	PDBTitle: crystal structure of the retinoblastoma protein n-domain2 provides insight into tumor suppression, ligand3 interaction and holoprotein architecture

Links to external resources
Added to library: Tue Mar 16 12:37:24 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T E E P D F T A L C Q K L K I P D H V R E R A W L T W E K V S S K K K E L W G I C I F I A A V D L D E X S F T F T E L Q K N I E I S V H K F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T
S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F N L L K E I D T S T K V D N A X S R L L K K Y D V L F A L F S K L E R T C E L I Y L T Q P S S S I S T E I N S A L V L K V S W I T F L L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
B
B
S S S
B
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K G E V L D D L V I S F Q L X L C V L D Y F I K L S P P X L L K E P Y K T A V I D T R I I E V L C K E H E C N I D E V K N V Y F K N F I P F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
G G G B
T T T T G G G
T T
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . .

Sequence X N S L L P E V E N L S K R Y E E I Y L K N K D L D A R L F L D H D K T L Q T D S I D S F E T Q R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T S
G G G G G G T
G G G
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	E	E	P	D	F	T	A	L	C	Q	K	L	K	I	P	D	H	V	R	E	R	A	W	L	T	W	E	K	V	S	S	K	K	K	E	L	W	G	I	C	I	F	I	A	A	V	D	L	D	E	X	S	F	T	F	T	E	L	Q	K	N	I	E	I	S	V	H	K	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T																																				T				S										T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	N	L	L	K	E	I	D	T	S	T	K	V	D	N	A	X	S	R	L	L	K	K	Y	D	V	L	F	A	L	F	S	K	L	E	R	T	C	E	L	I	Y	L	T	Q	P	S	S	S	I	S	T	E	I	N	S	A	L	V	L	K	V	S	W	I	T	F	L	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S																																			B			B				S	S	S			B		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	G	E	V	L	D	D	L	V	I	S	F	Q	L	X	L	C	V	L	D	Y	F	I	K	L	S	P	P	X	L	L	K	E	P	Y	K	T	A	V	I	D	T	R	I	I	E	V	L	C	K	E	H	E	C	N	I	D	E	V	K	N	V	Y	F	K	N	F	I	P	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																									T	S		G	G	G	B		T	T	T	T	G	G	G			T											T													T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Sequence	X	N	S	L	L	P	E	V	E	N	L	S	K	R	Y	E	E	I	Y	L	K	N	K	D	L	D	A	R	L	F	L	D	H	D	K	T	L	Q	T	D	S	I	D	S	F	E	T	Q	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T																					T	S			G	G	G	G	G	G	T		G	G	G											T