Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	D	S	Q	T	L	V	V	K	L	G	T	S	V	L	T	G	G	S	R	R	L	N	R	A	H	I	V	E	L	V	R	Q	C	A	Q	L	H	A	A	G	H	R	I	V	I	V	T	S	G	A	I	A	A	G	R	E	H	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?									?	?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	Y	P	E	L	P	A	T	I	A	S	K	Q	L	L	A	A	V	G	Q	S	R	L	I	Q	L	W	E	Q	L	F	S	I	Y	G	I	H	V	G	Q	M	L	L	T	R	A	D	M	E	D	R	E	R	F	L	N	A	R	D	T
Secondary structure
SS confidence
Disorder							?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	R	A	L	L	D	N	N	I	V	P	V	I	N	E	N	D	A	V	A	T	A	E	I	K	V	G	D	N	D	N	L	S	A	L	A	A	I	L	A	G	A	D	K	L	L	L	L	T	D	Q	K	G	L	Y	T	A	D	P	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	N	P	Q	A	E	L	I	K	D	V	Y	G	I	D	D	A	L	R	A	I	A	G	D	S	V	S	G	L	G	T	G	G	M	S	T	K	L	Q	A	A	D	V	A	C	R	A	G	I	D	T	I	I	A	A	G	S	K	P	G
Secondary structure
SS confidence
Disorder				?																				?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	I	G	D	V	M	E	G	I	S	V	G	T	L	F	H	A	Q	A	T	P	L	E	N	R	K	R	W	I	F	G	A	P	P	A	G	E	I	T	V	D	E	G	A	T	A	A	I	L	E	R	G	S	S	L	L	P	K	G	I
Secondary structure
SS confidence
Disorder																			?	?	?	?	?												?																		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		K	S	V	T	G	N	F	S	R	G	E	V	I	R	I	C	N	L	E	G	R	D	I	A	H	G	V	S	R	Y	N	S	D	A	L	R	R	I	A	G	H	H	S	Q	E	I	D	A	I	L	G	Y	E	Y	G	P	V	A	V	H
Secondary structure
SS confidence
Disorder																																										?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.
Sequence		R	D	D	M	I	T	R
Secondary structure
SS confidence
Disorder							?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2j5t chain F Region: 3 - 366 Aligned: 353 Modelled: 364 Confidence: 100.0% Identity: 99% PDB header:transferase Chain: F: PDB Molecule:glutamate 5-kinase; PDBTitle: glutamate 5-kinase from escherichia coli complexed with2 glutamate Phyre2 PDB 2w21 chain A Region: 3 - 258 Aligned: 246 Modelled: 256 Confidence: 100.0% Identity: 97% PDB header:transferase Chain: A: PDB Molecule:glutamate 5-kinase; PDBTitle: crystal structure of the aminoacid kinase domain of the2 glutamate 5 kinase of escherichia coli. Phyre2 PDB 2ako chain A domain 1 Region: 5 - 255 Aligned: 238 Modelled: 251 Confidence: 100.0% Identity: 34% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 1z9d chain A domain 1 Region: 2 - 258 Aligned: 235 Modelled: 252 Confidence: 100.0% Identity: 18% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 1ybd chain A domain 1 Region: 3 - 256 Aligned: 232 Modelled: 249 Confidence: 100.0% Identity: 19% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 2jjx chain C Region: 2 - 260 Aligned: 237 Modelled: 259 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: C: PDB Molecule:uridylate kinase; PDBTitle: the crystal structure of ump kinase from bacillus anthracis2 (ba1797) Phyre2 PDB 1e19 chain A Region: 5 - 257 Aligned: 243 Modelled: 253 Confidence: 100.0% Identity: 21% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: Carbamate kinase Phyre2 PDB 3nwy chain B Region: 1 - 257 Aligned: 230 Modelled: 235 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: B: PDB Molecule:uridylate kinase; PDBTitle: structure and allosteric regulation of the uridine monophosphate2 kinase from mycobacterium tuberculosis Phyre2 PDB 2rd5 chain A Region: 3 - 258 Aligned: 242 Modelled: 255 Confidence: 100.0% Identity: 22% PDB header:protein binding Chain: A: PDB Molecule:acetylglutamate kinase-like protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana Phyre2 PDB 2v5h chain B Region: 3 - 259 Aligned: 243 Modelled: 257 Confidence: 100.0% Identity: 20% PDB header:transcription Chain: B: PDB Molecule:acetylglutamate kinase; PDBTitle: controlling the storage of nitrogen as arginine: the2 complex of pii and acetylglutamate kinase from3 synechococcus elongatus pcc 7942 Phyre2 PDB 3ek5 chain A Region: 3 - 258 Aligned: 234 Modelled: 256 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: unique gtp-binding pocket and allostery of ump kinase from a gram-2 negative phytopathogen bacterium Phyre2 PDB 2ap9 chain A domain 1 Region: 3 - 257 Aligned: 239 Modelled: 255 Confidence: 100.0% Identity: 21% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: N-acetyl-l-glutamate kinase Phyre2 PDB 2e9y chain A Region: 5 - 257 Aligned: 243 Modelled: 253 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:carbamate kinase; PDBTitle: crystal structure of project ape1968 from aeropyrum pernix k1 Phyre2 PDB 2bne chain A domain 1 Region: 2 - 256 Aligned: 230 Modelled: 253 Confidence: 100.0% Identity: 17% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 2buf chain A domain 1 Region: 3 - 261 Aligned: 242 Modelled: 259 Confidence: 100.0% Identity: 21% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: N-acetyl-l-glutamate kinase Phyre2 PDB 1b7b chain A Region: 5 - 255 Aligned: 243 Modelled: 251 Confidence: 100.0% Identity: 19% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: Carbamate kinase Phyre2 PDB 2ogx chain B Region: 6 - 258 Aligned: 233 Modelled: 240 Confidence: 100.0% Identity: 21% PDB header:metal binding protein Chain: B: PDB Molecule:molybdenum storage protein subunit beta; PDBTitle: the crystal structure of the molybdenum storage protein from2 azotobacter vinelandii loaded with polyoxotungstates (wsto) Phyre2 PDB 3kzf chain C Region: 2 - 258 Aligned: 242 Modelled: 253 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: C: PDB Molecule:carbamate kinase; PDBTitle: structure of giardia carbamate kinase Phyre2 PDB 2a1f chain A domain 1 Region: 4 - 255 Aligned: 222 Modelled: 247 Confidence: 100.0% Identity: 18% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 2bty chain A domain 1 Region: 3 - 259 Aligned: 239 Modelled: 257 Confidence: 100.0% Identity: 21% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: N-acetyl-l-glutamate kinase Phyre2 1 c2j5tF_ 2 c2w21A_ 3 d2akoa1 4 d1z9da1 5 d1ybda1 6 c2jjxC_ 7 d1e19a_ 8 c3nwyB_ 9 c2rd5A_ 10 c2v5hB_ 11 c3ek5A_ 12 d2ap9a1 13 c2e9yA_ 14 d2bnea1 15 d2bufa1 16 d1b7ba_ 17 c2ogxB_ 18 c3kzfC_ 19 d2a1fa1 20 d2btya1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2j5tF_ 100.0 99 PDB header:transferase Chain: F: PDB Molecule:glutamate 5-kinase; PDBTitle: glutamate 5-kinase from escherichia coli complexed with2 glutamate 2 c2w21A_ 100.0 97 PDB header:transferase Chain: A: PDB Molecule:glutamate 5-kinase; PDBTitle: crystal structure of the aminoacid kinase domain of the2 glutamate 5 kinase of escherichia coli. 3 d2akoa1 100.0 34 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 4 d1z9da1 100.0 18 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 5 d1ybda1 100.0 19 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 6 c2jjxC_ 100.0 19 PDB header:transferase Chain: C: PDB Molecule:uridylate kinase; PDBTitle: the crystal structure of ump kinase from bacillus anthracis2 (ba1797) 7 d1e19a_ 100.0 21 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:Carbamate kinase 8 c3nwyB_ 100.0 20 PDB header:transferase Chain: B: PDB Molecule:uridylate kinase; PDBTitle: structure and allosteric regulation of the uridine monophosphate2 kinase from mycobacterium tuberculosis 9 c2rd5A_ 100.0 22 PDB header:protein binding Chain: A: PDB Molecule:acetylglutamate kinase-like protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana 10 c2v5hB_ 100.0 20 PDB header:transcription Chain: B: PDB Molecule:acetylglutamate kinase; PDBTitle: controlling the storage of nitrogen as arginine: the2 complex of pii and acetylglutamate kinase from3 synechococcus elongatus pcc 7942 11 c3ek5A_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: unique gtp-binding pocket and allostery of ump kinase from a gram-2 negative phytopathogen bacterium 12 d2ap9a1 100.0 21 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 13 c2e9yA_ 100.0 22 PDB header:transferase Chain: A: PDB Molecule:carbamate kinase; PDBTitle: crystal structure of project ape1968 from aeropyrum pernix k1 14 d2bnea1 100.0 17 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 15 d2bufa1 100.0 21 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 16 d1b7ba_ 100.0 19 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:Carbamate kinase 17 c2ogxB_ 100.0 21 PDB header:metal binding protein Chain: B: PDB Molecule:molybdenum storage protein subunit beta; PDBTitle: the crystal structure of the molybdenum storage protein from2 azotobacter vinelandii loaded with polyoxotungstates (wsto) 18 c3kzfC_ 100.0 19 PDB header:transferase Chain: C: PDB Molecule:carbamate kinase; PDBTitle: structure of giardia carbamate kinase 19 d2a1fa1 100.0 18 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 20 d2btya1 100.0 21 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 21 d2brxa1 not modelled 100.0 23 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 22 d1gs5a_ not modelled 100.0 21 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 23 c2egxA_ not modelled 100.0 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative acetylglutamate kinase; PDBTitle: crystal structure of the putative acetylglutamate kinase from thermus2 thermophilus 24 c2r98A_ not modelled 100.0 19 PDB header:transferase Chain: A: PDB Molecule:putative acetylglutamate synthase; PDBTitle: crystal structure of n-acetylglutamate synthase (selenomet2 substituted) from neisseria gonorrhoeae 25 c3ll9A_ not modelled 100.0 22 PDB header:transferase Chain: A: PDB Molecule:isopentenyl phosphate kinase; PDBTitle: x-ray structures of isopentenyl phosphate kinase 26 c3ll5C_ not modelled 100.0 23 PDB header:transferase Chain: C: PDB Molecule:gamma-glutamyl kinase related protein; PDBTitle: crystal structure of t. acidophilum isopentenyl phosphate kinase2 product complex 27 c3d40A_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:foma protein; PDBTitle: crystal structure of fosfomycin resistance kinase foma from2 streptomyces wedmorensis complexed with diphosphate 28 c2va1A_ not modelled 100.0 15 PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: crystal structure of ump kinase from ureaplasma parvum 29 c2ogxA_ not modelled 100.0 24 PDB header:metal binding protein Chain: A: PDB Molecule:molybdenum storage protein subunit alpha; PDBTitle: the crystal structure of the molybdenum storage protein from2 azotobacter vinelandii loaded with polyoxotungstates (wsto) 30 c2j4kC_ not modelled 100.0 19 PDB header:transferase Chain: C: PDB Molecule:uridylate kinase; PDBTitle: crystal structure of uridylate kinase from sulfolobus2 solfataricus in complex with ump to 2.2 angstrom3 resolution 31 c3k4yB_ not modelled 100.0 16 PDB header:transferase Chain: B: PDB Molecule:isopentenyl phosphate kinase; PDBTitle: crystal structure of isopentenyl phosphate kinase from m. jannaschii2 in complex with ipp 32 d2ij9a1 not modelled 100.0 24 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 33 c3l86A_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:acetylglutamate kinase; PDBTitle: the crystal structure of smu.665 from streptococcus mutans ua159 34 c3l76B_ not modelled 100.0 17 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of aspartate kinase from synechocystis 35 d2hmfa1 not modelled 100.0 26 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 36 c3ab4K_ not modelled 100.0 21 PDB header:transferase Chain: K: PDB Molecule:aspartokinase; PDBTitle: crystal structure of feedback inhibition resistant mutant of aspartate2 kinase from corynebacterium glutamicum in complex with lysine and3 threonine 37 d2j0wa1 not modelled 100.0 21 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 38 c3c1nA_ not modelled 100.0 22 PDB header:transferase Chain: A: PDB Molecule:probable aspartokinase; PDBTitle: crystal structure of allosteric inhibition threonine-sensitive2 aspartokinase from methanococcus jannaschii with l-threonine 39 d2cdqa1 not modelled 100.0 21 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 40 c2j0wA_ not modelled 100.0 25 PDB header:transferase Chain: A: PDB Molecule:lysine-sensitive aspartokinase 3; PDBTitle: crystal structure of e. coli aspartokinase iii in complex2 with aspartate and adp (r-state) 41 c2cdqB_ not modelled 100.0 21 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of arabidopsis thaliana aspartate kinase2 complexed with lysine and s-adenosylmethionine 42 d2cx1a1 not modelled 99.5 33 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 43 c3zv0D_ not modelled 99.4 17 PDB header:cell cycle Chain: D: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1p-cbf5p complex 44 d1iq8a3 not modelled 99.4 12 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 45 d1q7ha1 not modelled 99.3 31 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 46 d2as0a1 not modelled 99.2 23 Fold:PUA domain-like Superfamily:PUA domain-like Family:Hypothetical RNA methyltransferase domain (HRMD) 47 d1r3ea1 not modelled 99.2 28 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 48 d2ey4a1 not modelled 99.2 23 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 49 d2apoa1 not modelled 99.2 23 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 50 c1q7hA_ not modelled 99.0 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: structure of a conserved pua domain protein from thermoplasma2 acidophilum 51 c3d79A_ not modelled 99.0 22 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein ph0734; PDBTitle: crystal structure of hypothetical protein ph0734.1 from2 hyperthermophilic archaea pyrococcus horikoshii ot3 52 c1zs7A_ not modelled 98.9 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ape0525; PDBTitle: the structure of gene product ape0525 from aeropyrum pernix 53 c3uaiA_ not modelled 98.4 20 PDB header:isomerase/chaperone Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae 54 c3r90E_ not modelled 97.9 18 PDB header:rna binding protein Chain: E: PDB Molecule:malignant t cell-amplified sequence 1; PDBTitle: crystal structure of malignant t cell-amplified sequence 1 protein 55 c2ey4A_ not modelled 97.9 23 PDB header:isomerase/biosynthetic protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of a cbf5-nop10-gar1 complex 56 c1iq8B_ not modelled 97.9 11 PDB header:transferase Chain: B: PDB Molecule:archaeosine trna-guanine transglycosylase; PDBTitle: crystal structure of archaeosine trna-guanine2 transglycosylase from pyrococcus horikoshii 57 c2apoA_ not modelled 97.5 23 PDB header:isomerase/rna binding protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex 58 d1sqwa1 not modelled 96.5 20 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 59 c2as0A_ not modelled 95.1 25 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ph1915; PDBTitle: crystal structure of ph1915 (apc 5817): a hypothetical rna2 methyltransferase 60 c1sqwA_ not modelled 95.1 20 PDB header:unknown function Chain: A: PDB Molecule:saccharomyces cerevisiae nip7p homolog; PDBTitle: crystal structure of kd93, a novel protein expressed in the2 human pro 61 d2q07a1 not modelled 94.6 12 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 62 c3c0kB_ not modelled 93.5 23 PDB header:transferase Chain: B: PDB Molecule:upf0064 protein yccw; PDBTitle: crystal structure of a ribosomal rna methyltranferase 63 c3mn1B_ not modelled 92.3 18 PDB header:hydrolase Chain: B: PDB Molecule:probable yrbi family phosphatase; PDBTitle: crystal structure of probable yrbi family phosphatase from pseudomonas2 syringae pv.phaseolica 1448a 64 c2q07A_ not modelled 92.0 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein af0587; PDBTitle: crystal structure of af0587, a protein of unknown function 65 d1k1ea_ not modelled 90.8 15 Fold:HAD-like Superfamily:HAD-like Family:Probable phosphatase YrbI 66 c3e8mD_ not modelled 89.7 23 PDB header:transferase Chain: D: PDB Molecule:acylneuraminate cytidylyltransferase; PDBTitle: structure-function analysis of 2-keto-3-deoxy-d-glycero-d-galacto-2 nononate-9-phosphate (kdn) phosphatase defines a new clad within the3 type c0 had subfamily 67 c2b78A_ not modelled 89.1 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein smu.776; PDBTitle: a putative sam-dependent methyltransferase from2 streptococcus mutans 68 c3mmzA_ not modelled 86.4 17 PDB header:hydrolase Chain: A: PDB Molecule:putative had family hydrolase; PDBTitle: crystal structure of putative had family hydrolase from streptomyces2 avermitilis ma-4680 69 c3n07B_ not modelled 85.7 18 PDB header:hydrolase Chain: B: PDB Molecule:3-deoxy-d-manno-octulosonate 8-phosphate phosphatase; PDBTitle: structure of putative 3-deoxy-d-manno-octulosonate 8-phosphate2 phosphatase from vibrio cholerae 70 c2p9jH_ not modelled 84.8 18 PDB header:structural genomics, unknown function Chain: H: PDB Molecule:hypothetical protein aq2171; PDBTitle: crystal structure of aq2171 from aquifex aeolicus 71 c1ze2B_ not modelled 84.0 31 PDB header:lyase/rna Chain: B: PDB Molecule:trna pseudouridine synthase b; PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate 72 c2r8zC_ not modelled 83.7 20 PDB header:hydrolase Chain: C: PDB Molecule:3-deoxy-d-manno-octulosonate 8-phosphate phosphatase; PDBTitle: crystal structure of yrbi phosphatase from escherichia coli in complex2 with a phosphate and a calcium ion 73 c3dnpA_ not modelled 81.6 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:stress response protein yhax; PDBTitle: crystal structure of stress response protein yhax from bacillus2 subtilis 74 c3niwA_ not modelled 80.7 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:haloacid dehalogenase-like hydrolase; PDBTitle: crystal structure of a haloacid dehalogenase-like hydrolase from2 bacteroides thetaiotaomicron 75 c3ewiB_ not modelled 78.4 14 PDB header:transferase Chain: B: PDB Molecule:n-acylneuraminate cytidylyltransferase; PDBTitle: structural analysis of the c-terminal domain of murine cmp-2 sialic acid synthetase 76 c3n1uA_ not modelled 77.7 16 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, had superfamily, subfamily iii a; PDBTitle: structure of putative had superfamily (subfamily iii a) hydrolase from2 legionella pneumophila 77 c1xviA_ not modelled 76.4 21 PDB header:hydrolase Chain: A: PDB Molecule:putative mannosyl-3-phosphoglycerate phosphatase; PDBTitle: crystal structure of yedp, phosphatase-like domain protein2 from escherichia coli k12 78 d1xvia_ not modelled 76.4 21 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 79 c2qyhD_ not modelled 72.8 24 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical conserved protein, gk1056; PDBTitle: crystal structure of the hypothetical protein (gk1056) from2 geobacillus kaustophilus hta426 80 d1s2oa1 not modelled 72.1 20 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 81 d1xpja_ not modelled 58.7 24 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein VC0232 82 c3bq9A_ not modelled 54.7 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted rossmann fold nucleotide-binding domain- PDBTitle: crystal structure of predicted nucleotide-binding protein from2 idiomarina baltica os145 83 d1u02a_ not modelled 54.4 24 Fold:HAD-like Superfamily:HAD-like Family:Trehalose-phosphatase 84 d2b78a1 not modelled 54.0 16 Fold:PUA domain-like Superfamily:PUA domain-like Family:Hypothetical RNA methyltransferase domain (HRMD) 85 d1sgva1 not modelled 50.5 34 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 86 d2obba1 not modelled 49.1 18 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 87 d2rbka1 not modelled 45.3 21 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 88 d1ovma1 not modelled 44.1 13 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 89 c2i55C_ not modelled 43.9 25 PDB header:isomerase Chain: C: PDB Molecule:phosphomannomutase; PDBTitle: complex of glucose-1,6-bisphosphate with phosphomannomutase from2 leishmania mexicana 90 c4a26B_ not modelled 40.4 22 PDB header:oxidoreductase Chain: B: PDB Molecule:putative c-1-tetrahydrofolate synthase, cytoplasmic; PDBTitle: the crystal structure of leishmania major n5,n10-2 methylenetetrahydrofolate dehydrogenase/cyclohydrolase 91 d1rlma_ not modelled 39.5 17 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 92 d1vpea_ not modelled 36.0 7 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 93 c1f5nA_ not modelled 35.7 15 PDB header:signaling protein Chain: A: PDB Molecule:interferon-induced guanylate-binding protein 1; PDBTitle: human guanylate binding protein-1 in complex with the gtp2 analogue, gmppnp. 94 c2hx1D_ not modelled 35.1 20 PDB header:hydrolase Chain: D: PDB Molecule:predicted sugar phosphatases of the had PDBTitle: crystal structure of possible sugar phosphatase, had2 superfamily (zp_00311070.1) from cytophaga hutchinsonii3 atcc 33406 at 2.10 a resolution 95 d2b30a1 not modelled 33.8 13 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 96 c2p38A_ not modelled 31.4 14 PDB header:biosynthetic protein Chain: A: PDB Molecule:protein involved in ribosomal biogenesis; PDBTitle: crystal structure of pyrococcus abyssi protein homologue of2 saccharomyces cerevisiae nip7p 97 c1zmrA_ not modelled 29.8 9 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of the e. coli phosphoglycerate kinase 98 c3pgvB_ not modelled 29.3 16 PDB header:hydrolase Chain: B: PDB Molecule:haloacid dehalogenase-like hydrolase; PDBTitle: crystal structure of a haloacid dehalogenase-like hydrolase2 (kpn_04322) from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at3 2.39 a resolution 99 d1g2ba_ not modelled 28.7 13 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 100 c2dbkA_ not modelled 27.9 8 PDB header:signaling protein Chain: A: PDB Molecule:crk-like protein; PDBTitle: solution structures of the sh3 domain of human crk-like2 protein 101 c3q3vA_ not modelled 27.7 7 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from campylobacter2 jejuni. 102 c2cunA_ not modelled 26.8 15 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from pyrococcus2 horikoshii ot3 103 c3gh1A_ not modelled 25.1 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted nucleotide-binding protein; PDBTitle: crystal structure of predicted nucleotide-binding protein from vibrio2 cholerae 104 d1phpa_ not modelled 24.7 9 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 105 d1v6sa_ not modelled 24.2 17 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 106 d1wmaa1 not modelled 24.0 28 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 107 d1f5na2 not modelled 22.6 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 108 c3mpoD_ not modelled 22.2 26 PDB header:hydrolase Chain: D: PDB Molecule:predicted hydrolase of the had superfamily; PDBTitle: the crystal structure of a hydrolase from lactobacillus brevis 109 d1tksa_ not modelled 22.1 13 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 110 d1nrwa_ not modelled 21.9 21 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 111 d1vjda_ not modelled 21.5 13 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 112 c1b0aA_ not modelled 21.4 20 PDB header:oxidoreductase,hydrolase Chain: A: PDB Molecule:protein (fold bifunctional protein); PDBTitle: 5,10, methylene-tetrahydropholate2 dehydrogenase/cyclohydrolase from e coli. 113 d16pka_ not modelled 20.3 11 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 114 d1zq1a2 not modelled 20.2 12 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0