Emaill.a.kelley@imperial.ac.uk
DescriptionP07012
DateThu Jan 5 10:59:58 GMT 2012
Unique Job ID339db4a30a910f17

Detailed template information 

#Template Alignment Coverage3D Model Confidence% i.d. Template Information
1d1gqea_



100.0 97 Fold:Release factor
Superfamily:Release factor
Family:Release factor
2c2ihr1_



100.0 46 PDB header:translation
Chain: 1: PDB Molecule:peptide chain release factor 2;
PDBTitle: rf2 of thermus thermophilus
3c3d5cX_



100.0 34 PDB header:ribosome
Chain: X: PDB Molecule:peptide chain release factor 1;
PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 30s subunit, release factor 1 (rf1), two trna, and3 mrna molecules of the second 70s ribosome. the entire crystal4 structure contains two 70s ribosomes as described in remark 400.
4d1rq0a_



100.0 39 Fold:Release factor
Superfamily:Release factor
Family:Release factor
5d2b3tb1



100.0 43 Fold:Release factor
Superfamily:Release factor
Family:Release factor
6c1zbtA_



100.0 30 PDB header:translation
Chain: A: PDB Molecule:peptide chain release factor 1;
PDBTitle: crystal structure of peptide chain release factor 1 (rf-1) (smu.1085)2 from streptococcus mutans at 2.34 a resolution
7c2jvaA_



99.8 26 PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase domain protein;
PDBTitle: nmr solution structure of peptidyl-trna hydrolase domain protein from2 pseudomonas syringae pv. tomato. northeast structural genomics3 consortium target psr211
8c2jy9A_



99.8 35 PDB header:hydrolase
Chain: A: PDB Molecule:putative trna hydrolase domain;
PDBTitle: nmr structure of putative trna hydrolase domain from2 salmonella typhimurium. northeast structural genomics3 consortium target str220
9d1j26a_



99.8 25 Fold:dsRBD-like
Superfamily:Peptidyl-tRNA hydrolase domain-like
Family:Peptidyl-tRNA hydrolase domain
10c3errB_



91.6 11 PDB header:ligase
Chain: B: PDB Molecule:fusion protein of microtubule binding domain from
PDBTitle: microtubule binding domain from mouse cytoplasmic dynein as2 a fusion with seryl-trna synthetase
11c1wpaA_



90.3 17 PDB header:cell adhesion
Chain: A: PDB Molecule:occludin;
PDBTitle: 1.5 angstrom crystal structure of human occludin fragment2 413-522
12c1xawA_



89.7 17 PDB header:cell adhesion
Chain: A: PDB Molecule:occludin;
PDBTitle: crystal structure of the cytoplasmic distal c-terminal2 domain of occludin
13d1fpoa2



85.8 11 Fold:Open three-helical up-and-down bundle
Superfamily:HSC20 (HSCB), C-terminal oligomerisation domain
Family:HSC20 (HSCB), C-terminal oligomerisation domain
14c3layF_



60.9 22 PDB header:metal binding protein
Chain: F: PDB Molecule:zinc resistance-associated protein;
PDBTitle: alpha-helical barrel formed by the decamer of the zinc resistance-2 associated protein (stm4172) from salmonella enterica subsp. enterica3 serovar typhimurium str. lt2
15c2dq3A_



56.2 20 PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase;
PDBTitle: crystal structure of aq_298
16c3uo2A_



49.6 13 PDB header:chaperone
Chain: A: PDB Molecule:j-type co-chaperone jac1, mitochondrial;
PDBTitle: jac1 co-chaperone from saccharomyces cerevisiae
17c2dq0A_



46.2 13 PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase;
PDBTitle: crystal structure of seryl-trna synthetase from pyrococcus2 horikoshii complexed with a seryl-adenylate analog
18c1deqO_



45.6 11 PDB header:
PDB COMPND:
19d1seta1



45.2 20 Fold:Long alpha-hairpin
Superfamily:tRNA-binding arm
Family:Seryl-tRNA synthetase (SerRS)
20c3dtpA_



43.7 14 PDB header:contractile protein
Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and
PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map
21c3ghgK_



not modelled 41.7 13 PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen
22c2wmoA_



not modelled 39.2 14 PDB header:cell cycle
Chain: A: PDB Molecule:dedicator of cytokinesis protein 9;
PDBTitle: structure of the complex between dock9 and cdc42.
23c2e1mA_



not modelled 38.0 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-glutamate oxidase;
PDBTitle: crystal structure of l-glutamate oxidase from streptomyces sp. x-119-6
24c2jyaA_



not modelled 37.0 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1810;
PDBTitle: nmr solution structure of protein atu1810 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr23,3 ontario centre for structural proteomics target atc1776
25c3lssA_



not modelled 34.4 13 PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase;
PDBTitle: trypanosoma brucei seryl-trna synthetase in complex with atp
26c1f8sA_



not modelled 33.4 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-amino acid oxidase;
PDBTitle: crystal structure of l-amino acid oxidase from calloselasma2 rhodostoma, complexed with three molecules of o-aminobenzoate.
27c3s2xB_



not modelled 32.2 19 PDB header:transferase
Chain: B: PDB Molecule:acetyl-coa synthase subunit alpha;
PDBTitle: structure of acetyl-coenzyme a synthase alpha subunit c-terminal2 domain
28c3fhnA_



not modelled 32.1 19 PDB header:transport protein
Chain: A: PDB Molecule:protein transport protein tip20;
PDBTitle: structure of tip20p
29c2yrvA_



not modelled 30.3 19 PDB header:transcription
Chain: A: PDB Molecule:at-rich interactive domain-containing protein 4a;
PDBTitle: solution structure of the rbb1nt domain of human2 rb(retinoblastoma)-binding protein 1
30c1s1hI_



not modelled 30.2 15 PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s16;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i.
31c1wleB_



not modelled 29.1 21 PDB header:ligase
Chain: B: PDB Molecule:seryl-trna synthetase;
PDBTitle: crystal structure of mammalian mitochondrial seryl-trna2 synthetase complexed with seryl-adenylate
32c3qo8A_



not modelled 29.0 7 PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase, cytoplasmic;
PDBTitle: crystal structure of seryl-trna synthetase from candida albicans
33d1cuna2



not modelled 28.8 11 Fold:Spectrin repeat-like
Superfamily:Spectrin repeat
Family:Spectrin repeat
34c2chpC_



not modelled 28.1 19 PDB header:dna-binding protein
Chain: C: PDB Molecule:metalloregulation dna-binding stress protein;
PDBTitle: crystal structure of the dodecameric ferritin mrga from2 b.subtilis 168
35d1tjoa_



not modelled 26.3 18 Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
36c1sryB_



not modelled 25.0 15 PDB header:ligase(synthetase)
Chain: B: PDB Molecule:seryl-trna synthetase;
PDBTitle: refined crystal structure of the seryl-trna synthetase from2 thermus thermophilus at 2.5 angstroms resolution
37d2spca_



not modelled 24.7 18 Fold:Spectrin repeat-like
Superfamily:Spectrin repeat
Family:Spectrin repeat
38d1mqva_



not modelled 24.3 8 Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
39c1ei3E_



not modelled 23.6 15 PDB header:
PDB COMPND:
40c2gl2B_



not modelled 23.5 7 PDB header:cell adhesion
Chain: B: PDB Molecule:adhesion a;
PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,2 y69g) of bacterial adhesin fada
41d1ivsa1



not modelled 23.4 15 Fold:Long alpha-hairpin
Superfamily:tRNA-binding arm
Family:Valyl-tRNA synthetase (ValRS) C-terminal domain
42d1nj1a3



not modelled 23.1 17 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
43d1s05a_



not modelled 22.2 12 Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
44c3iq1A_



not modelled 21.1 15 PDB header:metal transport
Chain: A: PDB Molecule:dps family protein;
PDBTitle: crystal structure of dps protein from vibrio cholerae o1, a member of2 a broad superfamily of ferritin-like diiron-carboxylate proteins
45c3gitA_



not modelled 19.9 19 PDB header:transferase
Chain: A: PDB Molecule:carbon monoxide dehydrogenase/acetyl-coa synthase subunit
PDBTitle: crystal structure of a truncated acetyl-coa synthase
46c2c41K_



not modelled 19.8 10 PDB header:iron-binding/oxidation protein
Chain: K: PDB Molecule:dps family dna-binding stress response protein;
PDBTitle: x-ray structure of dps from thermosynechococcus elongatus
47c2r6cG_



not modelled 19.7 12 PDB header:replication
Chain: G: PDB Molecule:dnag primase, helicase binding domain;
PDBTitle: crystal form bh2
48c2cazF_



not modelled 19.4 60 PDB header:protein transport
Chain: F: PDB Molecule:protein srn2;
PDBTitle: escrt-i core
49c3ojaB_



not modelled 18.8 16 PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex
50c1s35A_



not modelled 18.5 13 PDB header:structural protein
Chain: A: PDB Molecule:spectrin beta chain, erythrocyte;
PDBTitle: crystal structure of repeats 8 and 9 of human erythroid2 spectrin
51c1ei3C_



not modelled 18.2 9 PDB header:
PDB COMPND:
52c2c5iT_



not modelled 18.2 19 PDB header:protein transport
Chain: T: PDB Molecule:t-snare affecting a late golgi compartment
PDBTitle: n-terminal domain of tlg1 complexed with n-terminus of2 vps51 in distorted conformation
53d1gqaa_



not modelled 18.0 18 Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
54d1s35a1



not modelled 17.5 15 Fold:Spectrin repeat-like
Superfamily:Spectrin repeat
Family:Spectrin repeat
55c2vvlD_



not modelled 17.4 27 PDB header:oxidoreductase
Chain: D: PDB Molecule:monoamine oxidase n;
PDBTitle: the structure of mao-n-d3, a variant of monoamine oxidase2 from aspergillus niger.
56c2qbvA_



not modelled 16.6 14 PDB header:isomerase
Chain: A: PDB Molecule:chorismate mutase;
PDBTitle: crystal structure of intracellular chorismate mutase from2 mycobacterium tuberculosis
57d2gy9i1



not modelled 16.6 38 Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
58c3kwoA_



not modelled 16.4 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative bacterioferritin;
PDBTitle: crystal structure of putative bacterioferritin from2 campylobacter jejuni
59d2vqei1



not modelled 16.2 28 Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
60d2pc6a2



not modelled 15.9 15 Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
61c2d5kC_



not modelled 15.8 12 PDB header:metal binding protein
Chain: C: PDB Molecule:dps family protein;
PDBTitle: crystal structure of dps from staphylococcus aureus
62c3ci9B_



not modelled 15.8 11 PDB header:transcription
Chain: B: PDB Molecule:heat shock factor-binding protein 1;
PDBTitle: crystal structure of the human hsbp1
63d1fafa_



not modelled 15.7 18 Fold:Long alpha-hairpin
Superfamily:Chaperone J-domain
Family:Chaperone J-domain
64d1m0da_



not modelled 15.7 33 Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Endonuclease I (Holliday junction resolvase)
65c3h0gA_



not modelled 15.7 17 PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase ii subunit rpb1;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
66d1ji4a_



not modelled 15.3 17 Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
67d1cpqa_



not modelled 15.2 18 Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
68c3m3wA_



not modelled 15.2 11 PDB header:endocytosis
Chain: A: PDB Molecule:protein kinase c and casein kinase ii substrate protein 3;
PDBTitle: crystal strcuture of mouse pacsin3 bar domain mutant
69c3pdgA_



not modelled 15.1 18 PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
70c1gk4A_



not modelled 15.1 10 PDB header:vimentin
Chain: A: PDB Molecule:vimentin;
PDBTitle: human vimentin coil 2b fragment (cys2)
71d1ji5a_



not modelled 14.8 16 Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
72d1u5pa2



not modelled 14.7 20 Fold:Spectrin repeat-like
Superfamily:Spectrin repeat
Family:Spectrin repeat
73c2pc6C_



not modelled 14.7 19 PDB header:lyase
Chain: C: PDB Molecule:probable acetolactate synthase isozyme iii (small subunit);
PDBTitle: crystal structure of putative acetolactate synthase- small subunit2 from nitrosomonas europaea
74d1ru3a_



not modelled 14.6 19 Fold:Prismane protein-like
Superfamily:Prismane protein-like
Family:Acetyl-CoA synthase
75d2fgca2



not modelled 14.6 28 Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
76d1p7hl1



not modelled 14.5 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
77c2k6lA_



not modelled 14.5 44 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the solution structure of xacb0070 from xanthonomas2 axonopodis pv citri reveals this new protein is a member of3 the rhh family of transcriptional repressors
78d1nj8a3



not modelled 14.5 18 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
79c3bbnI_



not modelled 14.4 19 PDB header:ribosome
Chain: I: PDB Molecule:ribosomal protein s9;
PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome.
80c2c6rA_



not modelled 14.3 14 PDB header:dna-binding protein
Chain: A: PDB Molecule:dna-binding stress response protein, dps family;
PDBTitle: fe-soaked crystal structure of the dps92 from deinococcus2 radiodurans
81c3bboH_



not modelled 14.0 26 PDB header:ribosome
Chain: H: PDB Molecule:ribosomal protein l5;
PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome
82c2z9fC_



not modelled 13.9 37 PDB header:biosynthetic protein
Chain: C: PDB Molecule:cellulose synthase operon protein d;
PDBTitle: crystal structure of axcesd protein from acetobacter xylinum
83d2j8wa1



not modelled 13.6 18 Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
84c2xzmI_



not modelled 13.5 23 PDB header:ribosome
Chain: I: PDB Molecule:rps16e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
85d2f1fa1



not modelled 13.1 18 Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
86d1oaoc_



not modelled 13.1 19 Fold:Prismane protein-like
Superfamily:Prismane protein-like
Family:Acetyl-CoA synthase
87c2f7nA_



not modelled 13.0 17 PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding stress response protein, dps family;
PDBTitle: structure of d. radiodurans dps-1
88c2zkqi_



not modelled 12.8 29 PDB header:ribosomal protein/rna
Chain: I: PDB Molecule:
PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
89d2f66c1



not modelled 12.7 47 Fold:Long alpha-hairpin
Superfamily:Endosomal sorting complex assembly domain
Family:VPS37 C-terminal domain-like
90d2gu3a1



not modelled 12.1 21 Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:PepSY-like
91c2lf0A_



not modelled 12.0 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein yibl;
PDBTitle: solution structure of sf3636, a two-domain unknown function protein2 from shigella flexneri 2a, determined by joint refinement of nmr,3 residual dipolar couplings and small-angle x-ray scatting, nesg4 target sfr339/ocsp target sf3636
92d1utya_



not modelled 11.8 15 Fold:BTV NS2-like ssRNA-binding domain
Superfamily:BTV NS2-like ssRNA-binding domain
Family:BTV NS2-like ssRNA-binding domain
93c1utyA_



not modelled 11.8 15 PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 2;
PDBTitle: crystal structure of the rna binding domain of bluetongue2 virus non-structural protein 2(ns2)
94c2jzxA_



not modelled 11.4 21 PDB header:rna binding protein
Chain: A: PDB Molecule:poly(rc)-binding protein 2;
PDBTitle: pcbp2 kh1-kh2 domains
95d1u5pa1



not modelled 11.4 16 Fold:Spectrin repeat-like
Superfamily:Spectrin repeat
Family:Spectrin repeat
96c3pdyB_



not modelled 11.2 11 PDB header:structural protein
Chain: B: PDB Molecule:plectin;
PDBTitle: structure of the third and fourth spectrin repeats of the plakin2 domain of plectin
97d2g5ca1



not modelled 11.1 19 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:TyrA dimerization domain-like
98d1e85a_



not modelled 11.1 7 Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
99c2obaE_



not modelled 10.9 24 PDB header:lyase
Chain: E: PDB Molecule:probable 6-pyruvoyl tetrahydrobiopterin synthase;
PDBTitle: pseudomonas aeruginosa 6-pyruvoyl tetrahydrobiopterin synthase