Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	C	G	E	F	S	L	I	A	R	Y	F	D	R	V	R	S	S	R	L	D	V	E	L	G	I	G	D	D	C	A	L	L	N	I	P	E	K	Q	T	L	A	I	S	T	D	T	L	V	A	G	N	H	F	L	P	D	I	D
Secondary structure
SS confidence
Disorder		?	?	?	?																?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	A	D	L	A	Y	K	A	L	A	V	N	L	S	D	L	A	A	M	G	A	D	P	A	W	L	T	L	A	L	T	L	P	D	V	D	E	A	W	L	E	S	F	S	D	S	L	F	D	L	L	N	Y	Y	D	M	Q	L	I	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	D	T	T	R	G	P	L	S	M	T	L	G	I	H	G	F	V	P	M	G	R	A	L	T	R	S	G	A	K	P	G	D	W	I	Y	V	T	G	T	P	G	D	S	A	A	G	L	A	I	L	Q	N	R	L	Q	V	A	D	A
Secondary structure
SS confidence
Disorder																																																						?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		K	D	A	D	Y	L	I	K	R	H	L	R	P	S	P	R	I	L	Q	G	Q	A	L	R	D	L	A	N	S	A	I	D	L	S	D	G	L	I	S	D	L	G	H	I	V	K	A	S	D	C	G	A	R	I	D	L	A	L	L	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		F	S	D	A	L	S	R	H	V	E	P	E	Q	A	L	R	W	A	L	S	G	G	E	D	Y	E	L	C	F	T	V	P	E	L	N	R	G	A	L	D	V	A	L	G	H	L	G	V	P	F	T	C	I	G	Q	M	T	A	D	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Sequence		E	G	L	C	F	I	R	D	G	E	P	V	T	L	D	W	K	G	Y	D	H	F	A	T	P
Secondary structure
SS confidence
Disorder																		?			?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3mcq chain A Region: 12 - 313 Aligned: 301 Modelled: 302 Confidence: 100.0% Identity: 42% PDB header:transferase Chain: A: PDB Molecule:thiamine-monophosphate kinase; PDBTitle: crystal structure of thiamine-monophosphate kinase (mfla_0573) from2 methylobacillus flagellatus kt at 1.91 a resolution Phyre2 PDB 3c9u chain B Region: 3 - 322 Aligned: 298 Modelled: 320 Confidence: 100.0% Identity: 34% PDB header:transferase Chain: B: PDB Molecule:thiamine monophosphate kinase; PDBTitle: aathil complexed with adp and tpp Phyre2 PDB 1vqv chain B Region: 3 - 314 Aligned: 287 Modelled: 309 Confidence: 100.0% Identity: 34% PDB header:transferase Chain: B: PDB Molecule:thiamine monophosphate kinase; PDBTitle: crystal structure of thiamine monophosphate kinase (thil)2 from aquifex aeolicus Phyre2 PDB 2yxz chain A Region: 3 - 313 Aligned: 296 Modelled: 310 Confidence: 100.0% Identity: 27% PDB header:transferase Chain: A: PDB Molecule:thiamin-monophosphate kinase; PDBTitle: crystal structure of tt0281 from thermus thermophilus hb8 Phyre2 PDB 2btu chain B Region: 4 - 302 Aligned: 294 Modelled: 299 Confidence: 100.0% Identity: 16% PDB header:synthase Chain: B: PDB Molecule:phosphoribosyl-aminoimidazole synthetase; PDBTitle: crystal structure of phosphoribosylformylglycinamidine2 cyclo-ligase from bacillus anthracis at 2.3a resolution. Phyre2 PDB 1cli chain D Region: 8 - 306 Aligned: 298 Modelled: 299 Confidence: 100.0% Identity: 17% PDB header:ligase Chain: D: PDB Molecule:protein (phosphoribosyl-aminoimidazole synthetase); PDBTitle: x-ray crystal structure of aminoimidazole ribonucleotide synthetase2 (purm), from the e. coli purine biosynthetic pathway, at 2.5 a3 resolution Phyre2 PDB 2rb9 chain D Region: 6 - 322 Aligned: 303 Modelled: 311 Confidence: 100.0% Identity: 22% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hype protein; PDBTitle: crystal structure of e.coli hype Phyre2 PDB 2z1t chain A Region: 21 - 323 Aligned: 291 Modelled: 300 Confidence: 100.0% Identity: 21% PDB header:lyase Chain: A: PDB Molecule:hydrogenase expression/formation protein hype; PDBTitle: crystal structure of hydrogenase maturation protein hype Phyre2 PDB 2z01 chain A Region: 7 - 304 Aligned: 293 Modelled: 298 Confidence: 100.0% Identity: 18% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of phosphoribosylaminoimidazole2 synthetase from geobacillus kaustophilus Phyre2 PDB 3m84 chain A Region: 7 - 305 Aligned: 298 Modelled: 299 Confidence: 100.0% Identity: 16% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of phosphoribosylaminoimidazole synthetase from2 francisella tularensis Phyre2 PDB 3fd5 chain B Region: 6 - 316 Aligned: 301 Modelled: 311 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase 1; PDBTitle: crystal structure of human selenophosphate synthetase 12 complex with ampcp Phyre2 PDB 2zau chain B Region: 17 - 305 Aligned: 277 Modelled: 281 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of an n-terminally truncated2 selenophosphate synthetase from aquifex aeolicus Phyre2 PDB 2zod chain B Region: 8 - 305 Aligned: 285 Modelled: 290 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of selenophosphate synthetase from2 aquifex aeolicus Phyre2 PDB 3ac6 chain A Region: 10 - 315 Aligned: 276 Modelled: 285 Confidence: 100.0% Identity: 20% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase 2; PDBTitle: crystal structure of purl from thermus thermophilus Phyre2 PDB 2z1e chain A Region: 26 - 317 Aligned: 283 Modelled: 292 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:hydrogenase expression/formation protein hype; PDBTitle: crystal structure of hype from thermococcus kodakaraensis (outward2 form) Phyre2 PDB 2v9y chain A Region: 38 - 305 Aligned: 267 Modelled: 268 Confidence: 100.0% Identity: 15% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: human aminoimidazole ribonucleotide synthetase Phyre2 PDB 2hs0 chain A Region: 10 - 315 Aligned: 269 Modelled: 302 Confidence: 100.0% Identity: 16% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase ii; PDBTitle: t. maritima purl complexed with atp Phyre2 PDB 3d54 chain I Region: 10 - 316 Aligned: 270 Modelled: 294 Confidence: 100.0% Identity: 16% PDB header:ligase Chain: I: PDB Molecule:phosphoribosylformylglycinamidine synthase ii; PDBTitle: stucture of purlqs from thermotoga maritima Phyre2 PDB 1t3t chain A Region: 5 - 315 Aligned: 288 Modelled: 305 Confidence: 100.0% Identity: 16% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase; PDBTitle: structure of formylglycinamide synthetase Phyre2 PDB 3mdo chain B Region: 38 - 312 Aligned: 272 Modelled: 275 Confidence: 100.0% Identity: 15% PDB header:ligase Chain: B: PDB Molecule:putative phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of a putative phosphoribosylformylglycinamidine2 cyclo-ligase (bdi_2101) from parabacteroides distasonis atcc 8503 at3 1.91 a resolution Phyre2 1 c3mcqA_ 2 c3c9uB_ 3 c1vqvB_ 4 c2yxzA_ 5 c2btuB_ 6 c1cliD_ 7 c2rb9D_ 8 c2z1tA_ 9 c2z01A_ 10 c3m84A_ 11 c3fd5B_ 12 c2zauB_ 13 c2zodB_ 14 c3ac6A_ 15 c2z1eA_ 16 c2v9yA_ 17 c2hs0A_ 18 c3d54I_ 19 c1t3tA_ 20 c3mdoB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3mcqA_ 100.0 42 PDB header:transferase Chain: A: PDB Molecule:thiamine-monophosphate kinase; PDBTitle: crystal structure of thiamine-monophosphate kinase (mfla_0573) from2 methylobacillus flagellatus kt at 1.91 a resolution 2 c3c9uB_ 100.0 34 PDB header:transferase Chain: B: PDB Molecule:thiamine monophosphate kinase; PDBTitle: aathil complexed with adp and tpp 3 c1vqvB_ 100.0 34 PDB header:transferase Chain: B: PDB Molecule:thiamine monophosphate kinase; PDBTitle: crystal structure of thiamine monophosphate kinase (thil)2 from aquifex aeolicus 4 c2yxzA_ 100.0 27 PDB header:transferase Chain: A: PDB Molecule:thiamin-monophosphate kinase; PDBTitle: crystal structure of tt0281 from thermus thermophilus hb8 5 c2btuB_ 100.0 16 PDB header:synthase Chain: B: PDB Molecule:phosphoribosyl-aminoimidazole synthetase; PDBTitle: crystal structure of phosphoribosylformylglycinamidine2 cyclo-ligase from bacillus anthracis at 2.3a resolution. 6 c1cliD_ 100.0 17 PDB header:ligase Chain: D: PDB Molecule:protein (phosphoribosyl-aminoimidazole synthetase); PDBTitle: x-ray crystal structure of aminoimidazole ribonucleotide synthetase2 (purm), from the e. coli purine biosynthetic pathway, at 2.5 a3 resolution 7 c2rb9D_ 100.0 22 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hype protein; PDBTitle: crystal structure of e.coli hype 8 c2z1tA_ 100.0 21 PDB header:lyase Chain: A: PDB Molecule:hydrogenase expression/formation protein hype; PDBTitle: crystal structure of hydrogenase maturation protein hype 9 c2z01A_ 100.0 18 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of phosphoribosylaminoimidazole2 synthetase from geobacillus kaustophilus 10 c3m84A_ 100.0 16 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of phosphoribosylaminoimidazole synthetase from2 francisella tularensis 11 c3fd5B_ 100.0 19 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase 1; PDBTitle: crystal structure of human selenophosphate synthetase 12 complex with ampcp 12 c2zauB_ 100.0 21 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of an n-terminally truncated2 selenophosphate synthetase from aquifex aeolicus 13 c2zodB_ 100.0 20 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of selenophosphate synthetase from2 aquifex aeolicus 14 c3ac6A_ 100.0 20 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase 2; PDBTitle: crystal structure of purl from thermus thermophilus 15 c2z1eA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:hydrogenase expression/formation protein hype; PDBTitle: crystal structure of hype from thermococcus kodakaraensis (outward2 form) 16 c2v9yA_ 100.0 15 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: human aminoimidazole ribonucleotide synthetase 17 c2hs0A_ 100.0 16 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase ii; PDBTitle: t. maritima purl complexed with atp 18 c3d54I_ 100.0 16 PDB header:ligase Chain: I: PDB Molecule:phosphoribosylformylglycinamidine synthase ii; PDBTitle: stucture of purlqs from thermotoga maritima 19 c1t3tA_ 100.0 16 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase; PDBTitle: structure of formylglycinamide synthetase 20 c3mdoB_ 100.0 15 PDB header:ligase Chain: B: PDB Molecule:putative phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of a putative phosphoribosylformylglycinamidine2 cyclo-ligase (bdi_2101) from parabacteroides distasonis atcc 8503 at3 1.91 a resolution 21 c3kizA_ not modelled 100.0 13 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of putative phosphoribosylformylglycinamidine cyclo-2 ligase (yp_676759.1) from cytophaga hutchinsonii atcc 33406 at 1.50 a3 resolution 22 d3c9ua1 not modelled 100.0 31 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 23 d1clib1 not modelled 100.0 20 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 24 d1clia1 not modelled 100.0 20 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 25 d3c9ua2 not modelled 100.0 36 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 26 d2zaua1 not modelled 100.0 22 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 27 d1vk3a2 not modelled 100.0 17 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 28 d2zoda2 not modelled 99.9 24 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 29 d2zoda1 not modelled 99.9 22 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 30 d2z1ea2 not modelled 99.9 18 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 31 d1clia2 not modelled 99.9 13 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 32 d2z1ea1 not modelled 99.9 21 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 33 d1vk3a3 not modelled 99.9 16 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 34 d1t3ta6 not modelled 99.9 13 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 35 d1vk3a1 not modelled 99.9 16 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 36 d1t3ta7 not modelled 99.7 20 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 37 d1t3ta4 not modelled 99.7 20 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 38 d1t3ta5 not modelled 99.4 19 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 39 c3qi7A_ not modelled 88.4 15 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution 40 d1to3a_ not modelled 86.4 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 41 c3fokH_ not modelled 77.1 19 PDB header:structural genomics, unknown function Chain: H: PDB Molecule:uncharacterized protein cgl0159; PDBTitle: crystal structure of cgl0159 from corynebacterium2 glutamicum (brevibacterium flavum). northeast structural3 genomics target cgr115 42 c3o1hB_ not modelled 71.5 9 PDB header:signaling protein Chain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao 43 d3dhxa1 not modelled 63.7 12 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 44 c2vk2A_ not modelled 61.8 12 PDB header:transport protein Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq; PDBTitle: crystal structure of a galactofuranose binding protein 45 d1jyea_ not modelled 59.9 3 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 46 c1jyeA_ not modelled 59.9 3 PDB header:transcription Chain: A: PDB Molecule:lactose operon repressor; PDBTitle: structure of a dimeric lac repressor with c-terminal deletion and k84l2 substitution 47 c2rjoA_ not modelled 57.4 12 PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans 48 c3d8uA_ not modelled 54.8 29 PDB header:transcription regulator Chain: A: PDB Molecule:purr transcriptional regulator; PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633 49 c3l49D_ not modelled 52.1 15 PDB header:transport protein Chain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1 50 c3jrkG_ not modelled 51.8 8 PDB header:lyase Chain: G: PDB Molecule:tagatose 1,6-diphosphate aldolase 2; PDBTitle: a putative tagatose 1,6-diphosphate aldolase from streptococcus2 pyogenes 51 c3rotA_ not modelled 51.7 9 PDB header:transport protein Chain: A: PDB Molecule:abc sugar transporter, periplasmic sugar binding protein; PDBTitle: crystal structure of abc sugar transporter (periplasmic sugar binding2 protein) from legionella pneumophila 52 c3ma0A_ not modelled 50.1 6 PDB header:sugar binding protein Chain: A: PDB Molecule:d-xylose-binding periplasmic protein; PDBTitle: closed liganded crystal structure of xylose binding protein from2 escherichia coli 53 d8abpa_ not modelled 49.8 15 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 54 c3cs3A_ not modelled 45.9 15 PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from enterococcus faecalis 55 c3jy6B_ not modelled 45.6 9 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci transcriptional regulator from lactobacillus2 brevis 56 d2csua1 not modelled 45.3 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 57 d2dria_ not modelled 44.8 18 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 58 c3ksmA_ not modelled 44.5 16 PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis 59 c3l6uA_ not modelled 44.4 3 PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system periplasmic PDBTitle: crystal structure of abc-type sugar transport system,2 periplasmic component from exiguobacterium sibiricum 60 d1guda_ not modelled 44.0 9 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 61 c3e61A_ not modelled 43.2 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative transcriptional repressor of ribose operon; PDBTitle: crystal structure of a putative transcriptional repressor of ribose2 operon from staphylococcus saprophyticus subsp. saprophyticus 62 c2q6tB_ not modelled 42.2 14 PDB header:hydrolase Chain: B: PDB Molecule:dnab replication fork helicase; PDBTitle: crystal structure of the thermus aquaticus dnab monomer 63 d2nzug1 not modelled 42.0 18 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 64 d2qrra1 not modelled 41.9 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 65 c2ioyB_ not modelled 41.3 9 PDB header:sugar binding protein Chain: B: PDB Molecule:periplasmic sugar-binding protein; PDBTitle: crystal structure of thermoanaerobacter tengcongensis2 ribose binding protein 66 c3hs3A_ not modelled 41.2 9 PDB header:transcription regulator Chain: A: PDB Molecule:ribose operon repressor; PDBTitle: crystal structure of periplasmic binding ribose operon2 repressor protein from lactobacillus acidophilus 67 c3jvdA_ not modelled 41.0 12 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulators; PDBTitle: crystal structure of putative transcription regulation repressor (laci2 family) from corynebacterium glutamicum 68 c3h5oB_ not modelled 39.8 12 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator gntr; PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum 69 c3egcF_ not modelled 39.5 6 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative ribose operon repressor; PDBTitle: crystal structure of a putative ribose operon repressor from2 burkholderia thailandensis 70 c3kkeA_ not modelled 38.5 18 PDB header:transcription regulator Chain: A: PDB Molecule:laci family transcriptional regulator; PDBTitle: crystal structure of a laci family transcriptional regulator2 from mycobacterium smegmatis 71 c3o74A_ not modelled 37.9 24 PDB header:transcription Chain: A: PDB Molecule:fructose transport system repressor frur; PDBTitle: crystal structure of cra transcriptional dual regulator from2 pseudomonas putida 72 c3e3mA_ not modelled 37.6 27 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a laci family transcriptional2 regulator from silicibacter pomeroyi 73 c3bilA_ not modelled 36.9 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable laci-family transcriptional regulator; PDBTitle: crystal structure of a probable laci family transcriptional2 regulator from corynebacterium glutamicum 74 c3c3kA_ not modelled 35.4 3 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of an uncharacterized protein from actinobacillus2 succinogenes 75 c3ctpB_ not modelled 35.0 12 PDB header:transcription regulator Chain: B: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of periplasmic binding protein/laci transcriptional2 regulator from alkaliphilus metalliredigens qymf complexed with d-3 xylulofuranose 76 c3gybB_ not modelled 34.6 24 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulators (laci-family PDBTitle: crystal structure of a laci-family transcriptional2 regulatory protein from corynebacterium glutamicum 77 c3d02A_ not modelled 34.1 6 PDB header:sugar binding protein Chain: A: PDB Molecule:putative laci-type transcriptional regulator; PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution 78 c2h0aA_ not modelled 33.6 18 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of probable transcription regulator from2 thermus thermophilus 79 c2rgyA_ not modelled 32.9 9 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of transcriptional regulator of laci family from2 burkhoderia phymatum 80 c3brqA_ not modelled 32.1 15 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator ascg; PDBTitle: crystal structure of the escherichia coli transcriptional repressor2 ascg 81 c2o20H_ not modelled 32.1 18 PDB header:transcription Chain: H: PDB Molecule:catabolite control protein a; PDBTitle: crystal structure of transcription regulator ccpa of lactococcus2 lactis 82 c2qvcC_ not modelled 31.8 3 PDB header:transport protein Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima 83 d1dbqa_ not modelled 31.7 12 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 84 d1tlfa_ not modelled 31.6 0 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 85 c2iksA_ not modelled 31.3 18 PDB header:transcription Chain: A: PDB Molecule:dna-binding transcriptional dual regulator; PDBTitle: crystal structure of n-terminal truncated dna-binding transcriptional2 dual regulator from escherichia coli k12 86 c3dzvB_ not modelled 30.7 17 PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution 87 d1tjya_ not modelled 30.3 9 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 88 c2qjhH_ not modelled 28.8 17 PDB header:lyase Chain: H: PDB Molecule:putative aldolase mj0400; PDBTitle: m. jannaschii adh synthase covalently bound to2 dihydroxyacetone phosphate 89 d1byka_ not modelled 28.7 9 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 90 c2fn9A_ not modelled 26.7 6 PDB header:sugar binding protein Chain: A: PDB Molecule:ribose abc transporter, periplasmic ribose-binding protein; PDBTitle: thermotoga maritima ribose binding protein unliganded form 91 d1o6xa_ not modelled 24.5 28 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 92 c3gndC_ not modelled 23.3 11 PDB header:lyase Chain: C: PDB Molecule:aldolase lsrf; PDBTitle: crystal structure of e. coli lsrf in complex with ribulose-5-phosphate 93 d1puca_ not modelled 23.1 11 Fold:Cell cycle regulatory proteins Superfamily:Cell cycle regulatory proteins Family:Cell cycle regulatory proteins 94 d1pyta_ not modelled 23.0 24 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 95 c3bblA_ not modelled 22.6 14 PDB header:regulatory protein Chain: A: PDB Molecule:regulatory protein of laci family; PDBTitle: crystal structure of a regulatory protein of laci family from2 chloroflexus aggregans 96 d1qd1a2 not modelled 22.4 11 Fold:Ferredoxin-like Superfamily:Formiminotransferase domain of formiminotransferase-cyclodeaminase. Family:Formiminotransferase domain of formiminotransferase-cyclodeaminase. 97 d1pcaa1 not modelled 22.2 28 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 98 d2boaa2 not modelled 21.8 20 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 99 c3hulA_ not modelled 21.0 15 PDB header:transferase Chain: A: PDB Molecule:homoserine kinase; PDBTitle: structure of putative homoserine kinase thrb from listeria2 monocytogenes 100 d1ayea2 not modelled 20.9 28 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 101 d1kwma2 not modelled 20.9 12 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 102 c2qu7B_ not modelled 20.5 9 PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcription regulator2 from staphylococcus saprophyticus subsp. saprophyticus 103 d1qb3a_ not modelled 20.3 22 Fold:Cell cycle regulatory proteins Superfamily:Cell cycle regulatory proteins Family:Cell cycle regulatory proteins

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0