Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	L	P	I	L	L	D	C	D	P	G	H	D	D	A	I	A	I	V	L	A	L	A	S	P	E	L	D	V	K	A	I	T	S	S	A	G	N	Q	T	P	E	K	T	L	R	N	V	L	R	M	L	T	L	L	N	R	T	D
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	P	V	A	G	G	A	V	K	P	L	M	R	E	L	I	I	A	D	N	V	H	G	E	S	G	L	D	G	P	A	L	P	E	P	T	F	A	P	Q	N	C	T	A	V	E	L	M	A	K	T	L	R	E	S	A	E	P	V	T
Secondary structure
SS confidence
Disorder																																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	V	S	T	G	P	Q	T	N	V	A	L	L	L	N	S	H	P	E	L	H	S	K	I	A	R	I	V	I	M	G	G	A	M	G	L	G	N	W	T	P	A	A	E	F	N	I	Y	V	D	P	E	A	A	E	I	V	F	Q	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	I	P	V	V	M	A	G	L	D	V	T	H	K	A	Q	I	H	V	E	D	T	E	R	F	R	A	I	G	N	P	V	S	T	I	V	A	E	L	L	D	F	F	L	E	Y	H	K	D	E	K	W	G	F	V	G	A	P	L	H
Secondary structure
SS confidence
Disorder																																																		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		D	P	C	T	I	A	W	L	L	K	P	E	L	F	T	S	V	E	R	W	V	G	V	E	T	Q	G	K	Y	T	Q	G	M	T	V	V	D	Y	Y	Y	L	T	G	N	K	P	N	A	T	V	M	V	D	V	D	R	Q	G	F	V
Secondary structure
SS confidence
Disorder																																										?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.
Sequence		D	L	L	A	D	R	L	K	F	Y	A
Secondary structure
SS confidence
Disorder											?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1yoe chain A Region: 2 - 311 Aligned: 300 Modelled: 310 Confidence: 100.0% Identity: 99% PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein ybek; PDBTitle: crystal structure of a the e. coli pyrimidine nucleoside hydrolase2 ybek with bound ribose Phyre2 PDB 2mas chain A Region: 2 - 311 Aligned: 309 Modelled: 310 Confidence: 100.0% Identity: 36% Fold: Nucleoside hydrolase Superfamily: Nucleoside hydrolase Family: Nucleoside hydrolase Phyre2 PDB 3b9x chain A Region: 2 - 311 Aligned: 308 Modelled: 310 Confidence: 100.0% Identity: 39% PDB header:hydrolase Chain: A: PDB Molecule:pyrimidine-specific ribonucleoside hydrolase rihb; PDBTitle: crystal structure of the e. coli pyrimidine nucleoside hydrolase yeik2 in complex with inosine Phyre2 PDB 1q8f chain A Region: 2 - 310 Aligned: 307 Modelled: 309 Confidence: 100.0% Identity: 39% Fold: Nucleoside hydrolase Superfamily: Nucleoside hydrolase Family: Nucleoside hydrolase Phyre2 PDB 1ezr chain A Region: 2 - 311 Aligned: 308 Modelled: 310 Confidence: 100.0% Identity: 36% Fold: Nucleoside hydrolase Superfamily: Nucleoside hydrolase Family: Nucleoside hydrolase Phyre2 PDB 3fz0 chain C Region: 1 - 311 Aligned: 304 Modelled: 311 Confidence: 100.0% Identity: 32% PDB header:hydrolase Chain: C: PDB Molecule:nucleoside hydrolase, putative; PDBTitle: inosine-guanosine nucleoside hydrolase (ig-nh) Phyre2 PDB 2c40 chain B Region: 2 - 309 Aligned: 290 Modelled: 295 Confidence: 100.0% Identity: 22% PDB header:hydrolase Chain: B: PDB Molecule:inosine-uridine preferring nucleoside hydrolase family PDBTitle: crystal structure of inosine-uridine preferring nucleoside2 hydrolase from bacillus anthracis at 2.2a resolution Phyre2 PDB 1kic chain A Region: 2 - 309 Aligned: 294 Modelled: 308 Confidence: 100.0% Identity: 24% Fold: Nucleoside hydrolase Superfamily: Nucleoside hydrolase Family: Nucleoside hydrolase Phyre2 PDB 2yhg chain A Region: 2 - 151 Aligned: 138 Modelled: 138 Confidence: 99.5% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:cellulose-binding protein; PDBTitle: ab initio phasing of a nucleoside hydrolase-related hypothetical2 protein from saccharophagus degradans that is associated with3 carbohydrate metabolism Phyre2 PDB 1gpm chain A domain 1 Region: 3 - 59 Aligned: 57 Modelled: 57 Confidence: 80.0% Identity: 9% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: N-type ATP pyrophosphatases Phyre2 PDB 7req chain A domain 2 Region: 18 - 114 Aligned: 83 Modelled: 97 Confidence: 64.1% Identity: 19% Fold: Flavodoxin-like Superfamily: Cobalamin (vitamin B12)-binding domain Family: Cobalamin (vitamin B12)-binding domain Phyre2 PDB 1ccw chain A Region: 19 - 66 Aligned: 46 Modelled: 48 Confidence: 58.6% Identity: 15% Fold: Flavodoxin-like Superfamily: Cobalamin (vitamin B12)-binding domain Family: Cobalamin (vitamin B12)-binding domain Phyre2 PDB 2dpl chain A Region: 3 - 57 Aligned: 55 Modelled: 55 Confidence: 52.7% Identity: 16% PDB header:ligase Chain: A: PDB Molecule:gmp synthase [glutamine-hydrolyzing] subunit b; PDBTitle: crystal structure of the gmp synthase from pyrococcus horikoshii ot3 Phyre2 PDB 2c5s chain A domain 1 Region: 4 - 63 Aligned: 59 Modelled: 60 Confidence: 44.1% Identity: 19% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: ThiI-like Phyre2 PDB 2zyi chain B Region: 105 - 171 Aligned: 67 Modelled: 67 Confidence: 40.9% Identity: 24% PDB header:hydrolase Chain: B: PDB Molecule:lipase, putative; PDBTitle: a. fulgidus lipase with fatty acid fragment and calcium Phyre2 PDB 1y80 chain A Region: 18 - 66 Aligned: 48 Modelled: 49 Confidence: 37.2% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted cobalamin binding protein; PDBTitle: structure of a corrinoid (factor iiim)-binding protein from2 moorella thermoacetica Phyre2 PDB 1o5z chain A domain 2 Region: 10 - 68 Aligned: 55 Modelled: 56 Confidence: 32.0% Identity: 16% Fold: Ribokinase-like Superfamily: MurD-like peptide ligases, catalytic domain Family: Folylpolyglutamate synthetase Phyre2 PDB 3p52 chain B Region: 1 - 57 Aligned: 56 Modelled: 57 Confidence: 31.9% Identity: 21% PDB header:ligase Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: nh3-dependent nad synthetase from campylobacter jejuni subsp. jejuni2 nctc 11168 in complex with the nitrate ion Phyre2 PDB 3tqi chain B Region: 3 - 57 Aligned: 55 Modelled: 55 Confidence: 31.1% Identity: 11% PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii Phyre2 PDB 1o7j chain A Region: 9 - 80 Aligned: 66 Modelled: 72 Confidence: 28.6% Identity: 23% Fold: Glutaminase/Asparaginase Superfamily: Glutaminase/Asparaginase Family: Glutaminase/Asparaginase Phyre2 1 c1yoeA_ 2 d2masa_ 3 c3b9xA_ 4 d1q8fa_ 5 d1ezra_ 6 c3fz0C_ 7 c2c40B_ 8 d1kica_ 9 c2yhgA_ 10 d1gpma1 11 d7reqa2 12 d1ccwa_ 13 c2dplA_ 14 d2c5sa1 15 c2zyiB_ 16 c1y80A_ 17 d1o5za2 18 c3p52B_ 19 c3tqiB_ 20 d1o7ja_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1yoeA_ 100.0 99 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein ybek; PDBTitle: crystal structure of a the e. coli pyrimidine nucleoside hydrolase2 ybek with bound ribose 2 d2masa_ 100.0 36 Fold:Nucleoside hydrolase Superfamily:Nucleoside hydrolase Family:Nucleoside hydrolase 3 c3b9xA_ 100.0 39 PDB header:hydrolase Chain: A: PDB Molecule:pyrimidine-specific ribonucleoside hydrolase rihb; PDBTitle: crystal structure of the e. coli pyrimidine nucleoside hydrolase yeik2 in complex with inosine 4 d1q8fa_ 100.0 39 Fold:Nucleoside hydrolase Superfamily:Nucleoside hydrolase Family:Nucleoside hydrolase 5 d1ezra_ 100.0 36 Fold:Nucleoside hydrolase Superfamily:Nucleoside hydrolase Family:Nucleoside hydrolase 6 c3fz0C_ 100.0 32 PDB header:hydrolase Chain: C: PDB Molecule:nucleoside hydrolase, putative; PDBTitle: inosine-guanosine nucleoside hydrolase (ig-nh) 7 c2c40B_ 100.0 22 PDB header:hydrolase Chain: B: PDB Molecule:inosine-uridine preferring nucleoside hydrolase family PDBTitle: crystal structure of inosine-uridine preferring nucleoside2 hydrolase from bacillus anthracis at 2.2a resolution 8 d1kica_ 100.0 24 Fold:Nucleoside hydrolase Superfamily:Nucleoside hydrolase Family:Nucleoside hydrolase 9 c2yhgA_ 99.5 16 PDB header:hydrolase Chain: A: PDB Molecule:cellulose-binding protein; PDBTitle: ab initio phasing of a nucleoside hydrolase-related hypothetical2 protein from saccharophagus degradans that is associated with3 carbohydrate metabolism 10 d1gpma1 80.0 9 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 11 d7reqa2 64.1 19 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 12 d1ccwa_ 58.6 15 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 13 c2dplA_ 52.7 16 PDB header:ligase Chain: A: PDB Molecule:gmp synthase [glutamine-hydrolyzing] subunit b; PDBTitle: crystal structure of the gmp synthase from pyrococcus horikoshii ot3 14 d2c5sa1 44.1 19 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ThiI-like 15 c2zyiB_ 40.9 24 PDB header:hydrolase Chain: B: PDB Molecule:lipase, putative; PDBTitle: a. fulgidus lipase with fatty acid fragment and calcium 16 c1y80A_ 37.2 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted cobalamin binding protein; PDBTitle: structure of a corrinoid (factor iiim)-binding protein from2 moorella thermoacetica 17 d1o5za2 32.0 16 Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:Folylpolyglutamate synthetase 18 c3p52B_ 31.9 21 PDB header:ligase Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: nh3-dependent nad synthetase from campylobacter jejuni subsp. jejuni2 nctc 11168 in complex with the nitrate ion 19 c3tqiB_ 31.1 11 PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii 20 d1o7ja_ 28.6 23 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 21 c3r79B_ not modelled 28.5 14 PDB header:structure genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharactertized protein from agrobacterium2 tumefaciens 22 d1o94c_ not modelled 23.8 28 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 23 c3p2kA_ not modelled 22.5 11 PDB header:transferase Chain: A: PDB Molecule:16s rrna methylase; PDBTitle: structure of an antibiotic related methyltransferase 24 d1nnsa_ not modelled 21.7 13 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 25 c2vosA_ not modelled 20.5 28 PDB header:ligase Chain: A: PDB Molecule:folylpolyglutamate synthase protein folc; PDBTitle: mycobacterium tuberculosis folylpolyglutamate synthase2 complexed with adp 26 c3fiuD_ not modelled 19.3 24 PDB header:ligase Chain: D: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: structure of nmn synthetase from francisella tularensis 27 d1wsaa_ not modelled 18.4 18 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 28 d4pgaa_ not modelled 18.0 19 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 29 d1j20a1 not modelled 18.0 24 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 30 c2derA_ not modelled 17.6 14 PDB header:transferase/rna Chain: A: PDB Molecule:trna-specific 2-thiouridylase mnma; PDBTitle: cocrystal structure of an rna sulfuration enzyme mnma and2 trna-glu in the initial trna binding state 31 c3ezxA_ not modelled 17.3 19 PDB header:transferase Chain: A: PDB Molecule:monomethylamine corrinoid protein 1; PDBTitle: structure of methanosarcina barkeri monomethylamine2 corrinoid protein 32 c2hmaA_ not modelled 17.2 15 PDB header:transferase Chain: A: PDB Molecule:probable trna (5-methylaminomethyl-2-thiouridylate)- PDBTitle: the crystal structure of trna (5-methylaminomethyl-2-thiouridylate)-2 methyltransferase trmu from streptococcus pneumoniae 33 c3sz8D_ not modelled 17.1 12 PDB header:transferase Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2; PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei 34 c1w78A_ not modelled 17.1 17 PDB header:synthase Chain: A: PDB Molecule:folc bifunctional protein; PDBTitle: e.coli folc in complex with dhpp and adp 35 d1lw7a1 not modelled 15.6 8 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 36 c2d6fA_ not modelled 15.5 22 PDB header:ligase/rna Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln) 37 d2ocda1 not modelled 15.1 18 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 38 c1gpmD_ not modelled 15.1 9 PDB header:transferase (glutamine amidotransferase) Chain: D: PDB Molecule:gmp synthetase; PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate 39 d1tcaa_ not modelled 15.0 18 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases 40 c3cseA_ not modelled 14.9 33 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrofolate reductase; PDBTitle: candida glabrata dihydrofolate reductase complexed with2 nadph and 2,4-diamino-5-(3-(2,5-dimethoxyphenyl)prop-1-3 ynyl)-6-ethylpyrimidine (ucp120b) 41 d2gc6a2 not modelled 14.4 17 Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:Folylpolyglutamate synthetase 42 d1ik6a2 not modelled 14.2 32 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 43 d2vk9a1 not modelled 13.6 15 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Glycosylating toxin catalytic domain-like 44 d1agxa_ not modelled 11.6 12 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 45 d3bula2 not modelled 11.5 16 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 46 c1yunB_ not modelled 10.8 33 PDB header:transferase Chain: B: PDB Molecule:probable nicotinate-nucleotide PDBTitle: crystal structure of nicotinic acid mononucleotide2 adenylyltransferase from pseudomonas aeruginosa 47 d3cx5a2 not modelled 9.7 15 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:MPP-like 48 d1xnga1 not modelled 9.2 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 49 c1wnfA_ not modelled 8.9 18 PDB header:hydrolase Chain: A: PDB Molecule:l-asparaginase; PDBTitle: crystal structure of ph0066 from pyrococcus horikoshii 50 d1umdb2 not modelled 8.6 16 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 51 c1o5zA_ not modelled 8.5 18 PDB header:ligase Chain: A: PDB Molecule:folylpolyglutamate synthase/dihydrofolate synthase; PDBTitle: crystal structure of folylpolyglutamate synthase (tm0166) from2 thermotoga maritima at 2.10 a resolution 52 c3rg9A_ not modelled 8.4 30 PDB header:oxidoreductase/oxidoreductase inhibitor Chain: A: PDB Molecule:bifunctional dihydrofolate reductase-thymidylate synthase; PDBTitle: trypanosoma brucei dihydrofolate reductase (tbdhfr) in complex with2 wr99210 53 d2bfdb2 not modelled 8.3 32 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 54 c1w8gA_ not modelled 8.1 15 PDB header:plp-binding protein Chain: A: PDB Molecule:hypothetical upf0001 protein yggs; PDBTitle: crystal structure of e. coli k-12 yggs 55 c3si9B_ not modelled 7.8 14 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from bartonella2 henselae 56 c1lw7A_ not modelled 7.5 8 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulator nadr; PDBTitle: nadr protein from haemophilus influenzae 57 c3dlaD_ not modelled 7.4 21 PDB header:ligase Chain: D: PDB Molecule:glutamine-dependent nad(+) synthetase; PDBTitle: x-ray crystal structure of glutamine-dependent nad+ synthetase from2 mycobacterium tuberculosis bound to naad+ and don 58 c3ghfA_ not modelled 7.3 9 PDB header:cell cycle Chain: A: PDB Molecule:septum site-determining protein minc; PDBTitle: crystal structure of the septum site-determining protein2 minc from salmonella typhimurium 59 d1qs0b2 not modelled 7.3 21 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 60 d2bvla1 not modelled 7.3 23 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Glycosylating toxin catalytic domain-like 61 c3uowB_ not modelled 6.9 15 PDB header:ligase Chain: B: PDB Molecule:gmp synthetase; PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum 62 d1kqpa_ not modelled 6.9 24 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 63 d1efvb_ not modelled 6.9 31 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 64 c1jpkA_ not modelled 6.8 15 PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: gly156asp mutant of human urod, human uroporphyrinogen iii2 decarboxylase 65 c3nxkE_ not modelled 6.8 21 PDB header:hydrolase Chain: E: PDB Molecule:cytoplasmic l-asparaginase; PDBTitle: crystal structure of probable cytoplasmic l-asparaginase from2 campylobacter jejuni 66 d1xrsb1 not modelled 6.8 13 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 67 d2d6fa2 not modelled 6.8 21 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 68 d1fmfa_ not modelled 6.7 15 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 69 d2ozlb2 not modelled 6.7 21 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 70 c2wltA_ not modelled 6.6 16 PDB header:hydrolase Chain: A: PDB Molecule:l-asparaginase; PDBTitle: the crystal structure of helicobacter pylori l-asparaginase2 at 1.4 a resolution 71 c1xtyD_ not modelled 6.5 25 PDB header:hydrolase Chain: D: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of sulfolobus solfataricus peptidyl-trna2 hydrolase 72 d1ct5a_ not modelled 6.5 10 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:"Hypothetical" protein ybl036c 73 d1q7sa_ not modelled 6.3 27 Fold:Peptidyl-tRNA hydrolase II Superfamily:Peptidyl-tRNA hydrolase II Family:Peptidyl-tRNA hydrolase II 74 d1urha2 not modelled 6.1 25 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 75 c2dy3B_ not modelled 6.0 16 PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from corynebacterium glutamicum 76 d1kama_ not modelled 6.0 33 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 77 d5mdha1 not modelled 6.0 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 78 c3jz0B_ not modelled 6.0 24 PDB header:transferase/antibiotic Chain: B: PDB Molecule:lincosamide nucleotidyltransferase; PDBTitle: linb complexed with clindamycin and ampcpp 79 c1kh2D_ not modelled 5.9 24 PDB header:ligase Chain: D: PDB Molecule:argininosuccinate synthetase; PDBTitle: crystal structure of thermus thermophilus hb82 argininosuccinate synthetase in complex with atp 80 c2d3kA_ not modelled 5.9 36 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: structural study on project id ph1539 from pyrococcus2 horikoshii ot3 81 d1ffgb_ not modelled 5.9 31 Fold:Ferredoxin-like Superfamily:CheY-binding domain of CheA Family:CheY-binding domain of CheA 82 c2zv3E_ not modelled 5.8 33 PDB header:hydrolase Chain: E: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of project mj0051 from methanocaldococcus2 jannaschii dsm 2661 83 c2gc6A_ not modelled 5.8 17 PDB header:ligase Chain: A: PDB Molecule:folylpolyglutamate synthase; PDBTitle: s73a mutant of l. casei fpgs 84 c3f0uX_ not modelled 5.8 19 PDB header:oxidoreductase Chain: X: PDB Molecule:trimethoprim-sensitive dihydrofolate reductase; PDBTitle: staphylococcus aureus f98y mutant dihydrofolate reductase2 complexed with nadph and 2,4-diamino-5-[3-(3-methoxy-5-3 phenylphenyl)but-1-ynyl]-6-methylpyrimidine 85 d1vbka1 not modelled 5.7 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ThiI-like 86 d3erja1 not modelled 5.7 33 Fold:Peptidyl-tRNA hydrolase II Superfamily:Peptidyl-tRNA hydrolase II Family:Peptidyl-tRNA hydrolase II 87 c1xrsB_ not modelled 5.6 12 PDB header:isomerase Chain: B: PDB Molecule:d-lysine 5,6-aminomutase beta subunit; PDBTitle: crystal structure of lysine 5,6-aminomutase in complex with plp,2 cobalamin, and 5'-deoxyadenosine 88 c2ywcC_ not modelled 5.6 20 PDB header:ligase Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp 89 d2nu7b1 not modelled 5.6 11 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 90 d1u5sb1 not modelled 5.6 18 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 91 d1hioa_ not modelled 5.6 18 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 92 c1a0oH_ not modelled 5.5 31 PDB header:chemotaxis Chain: H: PDB Molecule:chea; PDBTitle: chey-binding domain of chea in complex with chey 93 d2pg3a1 not modelled 5.5 19 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 94 c3llxA_ not modelled 5.5 15 PDB header:isomerase Chain: A: PDB Molecule:predicted amino acid aldolase or racemase; PDBTitle: crystal structure of an ala racemase-like protein (il1761) from2 idiomarina loihiensis at 1.50 a resolution 95 d1t1ra2 not modelled 5.4 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 96 d2b3ya2 not modelled 5.4 23 Fold:Aconitase iron-sulfur domain Superfamily:Aconitase iron-sulfur domain Family:Aconitase iron-sulfur domain 97 d1s8na_ not modelled 5.3 3 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 98 d1kmva_ not modelled 5.3 43 Fold:Dihydrofolate reductase-like Superfamily:Dihydrofolate reductase-like Family:Dihydrofolate reductases 99 d1qf5a_ not modelled 5.2 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0