Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP21179
DateThu Jan 5 11:38:00 GMT 2012
Unique Job ID23f094ecbf46be35

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1p81A_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:catalase hpii;
PDBTitle: crystal structure of the d181e variant of catalase hpii2 from e. coli
Confidence and coverage
Confidence:100.0% Coverage: 97%
727 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSQHNEKNPHQHQSPLHDSSEAKPGMDSLAPEDGSHRPAAEPTPPGAQPTAPGSLKAPDT
Secondary structure 
SS confidence 
Disorder  ?????????????
?
???????????????????????????????????????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  RNEKLNSLEDVRKGSENYALTTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHE
Secondary structure 
SS confidence 
Disorder  ????
??
???
?
??
?
????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  RIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVR
Secondary structure 
SS confidence 
Disorder  ????
?
??
????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  DIRGFATKFYTEEGIFDLVGNNTPIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFW
Secondary structure 
SS confidence 
Disorder 
?
?????????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  DYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKA
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  SLVWDEAQKLTGRDPDFHRRELWEAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLI
Secondary structure 
SS confidence 
Disorder 
??
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  PEELVPVQRVGKMVLNRNPDNFFAENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQI
Secondary structure 
SS confidence 
Disorder 
????
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  SRLGGPNFHEIPINRPTCPYHNFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRG
Secondary structure 
SS confidence 
Disorder 
????????
???
????
??????????????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  GFESYQERVEGNKVRERSPSFGEYYSHPRLFWLSQTPFEQRHIVDGFSFELSKVVRPYIR
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  ERVVDQLAHIDLTLAQAVAKNLGIELTDDQLNITPPPDVNGLKKDPSLSLYAIPDGDVKG
Secondary structure 
SS confidence 
Disorder 
?
?
?????????????????????????????????
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  RVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSL
Secondary structure 
SS confidence 
Disorder 
?
??
???????
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  TVDAVIVPCGNIADIADNGDANYYLMEAYKHLKPIALAGDARKFKATIKIADQGEEGIVE
Secondary structure 
SS confidence 
Disorder 
??
?
?????????
Disorder confidence 
 
   .........730.........740.........750...
Sequence  ADSADGSFMDELLTLMAAHRVWSRIPKIDKIPA
Secondary structure 
SS confidence 
Disorder 
???????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1p81 chain A

3D model

Region: 27 - 753
Aligned: 727
Modelled: 727
Confidence: 100.0%
Identity: 100%
PDB header:oxidoreductase
Chain: A: PDB Molecule:catalase hpii;
PDBTitle: crystal structure of the d181e variant of catalase hpii2 from e. coli

Phyre2

PDB 3ej6 chain D

3D model

Region: 62 - 746
Aligned: 666
Modelled: 685
Confidence: 100.0%
Identity: 44%
PDB header:oxidoreductase
Chain: D: PDB Molecule:catalase-3;
PDBTitle: neurospora crassa catalase-3 crystal structure

Phyre2

PDB 2iuf chain A

3D model

Region: 65 - 747
Aligned: 661
Modelled: 667
Confidence: 100.0%
Identity: 45%
PDB header:oxidoreductase
Chain: A: PDB Molecule:catalase;
PDBTitle: the structures of penicillium vitale catalase: resting2 state, oxidised state (compound i) and complex with3 aminotriazole

Phyre2

PDB 1sy7 chain B

3D model

Region: 78 - 751
Aligned: 661
Modelled: 674
Confidence: 100.0%
Identity: 50%
PDB header:oxidoreductase
Chain: B: PDB Molecule:catalase 1;
PDBTitle: crystal structure of the catalase-1 from neurospora crassa, native2 structure at 1.75a resolution.

Phyre2

PDB 1p80 chain A domain 2

3D model

Region: 27 - 597
Aligned: 571
Modelled: 571
Confidence: 100.0%
Identity: 100%
Fold: Heme-dependent catalase-like
Superfamily: Heme-dependent catalase-like
Family: Heme-dependent catalases

Phyre2

PDB 2j2m chain D

3D model

Region: 78 - 566
Aligned: 477
Modelled: 482
Confidence: 100.0%
Identity: 43%
PDB header:oxidoreductase
Chain: D: PDB Molecule:catalase;
PDBTitle: crystal structure analysis of catalase from exiguobacterium2 oxidotolerans

Phyre2

PDB 1qwl chain A

3D model

Region: 76 - 562
Aligned: 480
Modelled: 487
Confidence: 100.0%
Identity: 44%
Fold: Heme-dependent catalase-like
Superfamily: Heme-dependent catalase-like
Family: Heme-dependent catalases

Phyre2

PDB 1e93 chain A

3D model

Region: 78 - 564
Aligned: 472
Modelled: 487
Confidence: 100.0%
Identity: 42%
Fold: Heme-dependent catalase-like
Superfamily: Heme-dependent catalase-like
Family: Heme-dependent catalases

Phyre2

PDB 1gwe chain A

3D model

Region: 73 - 569
Aligned: 483
Modelled: 497
Confidence: 100.0%
Identity: 38%
Fold: Heme-dependent catalase-like
Superfamily: Heme-dependent catalase-like
Family: Heme-dependent catalases

Phyre2

PDB 1m7s chain A

3D model

Region: 79 - 578
Aligned: 482
Modelled: 491
Confidence: 100.0%
Identity: 39%
Fold: Heme-dependent catalase-like
Superfamily: Heme-dependent catalase-like
Family: Heme-dependent catalases

Phyre2

PDB 1si8 chain A

3D model

Region: 78 - 562
Aligned: 471
Modelled: 485
Confidence: 100.0%
Identity: 44%
Fold: Heme-dependent catalase-like
Superfamily: Heme-dependent catalase-like
Family: Heme-dependent catalases

Phyre2

PDB 4blc chain A

3D model

Region: 59 - 562
Aligned: 489
Modelled: 504
Confidence: 100.0%
Identity: 40%
Fold: Heme-dependent catalase-like
Superfamily: Heme-dependent catalase-like
Family: Heme-dependent catalases

Phyre2

PDB 1dgf chain A

3D model

Region: 59 - 562
Aligned: 489
Modelled: 504
Confidence: 100.0%
Identity: 39%
Fold: Heme-dependent catalase-like
Superfamily: Heme-dependent catalase-like
Family: Heme-dependent catalases

Phyre2

PDB 2xq1 chain M

3D model

Region: 78 - 562
Aligned: 469
Modelled: 485
Confidence: 100.0%
Identity: 42%
PDB header:oxidoreductase
Chain: M: PDB Molecule:peroxisomal catalase;
PDBTitle: crystal structure of peroxisomal catalase from the yeast hansenula2 polymorpha

Phyre2

PDB 1a4e chain A

3D model

Region: 76 - 562
Aligned: 475
Modelled: 487
Confidence: 100.0%
Identity: 39%
Fold: Heme-dependent catalase-like
Superfamily: Heme-dependent catalase-like
Family: Heme-dependent catalases

Phyre2

PDB 1f4j chain C

3D model

Region: 78 - 562
Aligned: 470
Modelled: 485
Confidence: 100.0%
Identity: 40%
PDB header:oxidoreductase
Chain: C: PDB Molecule:catalase;
PDBTitle: structure of tetragonal crystals of human erythrocyte2 catalase

Phyre2

PDB 1ye9 chain E

3D model

Region: 309 - 564
Aligned: 256
Modelled: 256
Confidence: 100.0%
Identity: 100%
PDB header:oxidoreductase
Chain: E: PDB Molecule:catalase hpii;
PDBTitle: crystal structure of proteolytically truncated catalase2 hpii from e. coli

Phyre2

PDB 1ye9 chain A

3D model

Region: 75 - 297
Aligned: 223
Modelled: 223
Confidence: 100.0%
Identity: 100%
PDB header:oxidoreductase
Chain: A: PDB Molecule:catalase hpii;
PDBTitle: crystal structure of proteolytically truncated catalase2 hpii from e. coli

Phyre2

PDB 1u5u chain A

3D model

Region: 69 - 432
Aligned: 324
Modelled: 339
Confidence: 100.0%
Identity: 18%
Fold: Heme-dependent catalase-like
Superfamily: Heme-dependent catalase-like
Family: Allene oxide synthase

Phyre2

PDB 3e4w chain B

3D model

Region: 110 - 427
Aligned: 295
Modelled: 318
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a 33kda catalase-related protein from2 mycobacterium avium subsp. paratuberculosis. p2(1)2(1)2(1) crystal3 form.

Phyre2
1
c1p81A_
2
c3ej6D_
3
c2iufA_
4
c1sy7B_
5
d1p80a2
6
c2j2mD_
7
d1qwla_
8
d1e93a_
9
d1gwea_
10
d1m7sa_
11
d1si8a_
12
d4blca_
13
d1dgfa_
14
c2xq1M_
15
d1a4ea_
16
c1f4jC_
17
c1ye9E_
18
c1ye9A_
19
d1u5ua_
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c3e4wB_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1p81A_
100.0 100 PDB header:oxidoreductase
Chain: A: PDB Molecule:catalase hpii;
PDBTitle: crystal structure of the d181e variant of catalase hpii2 from e. coli
2c3ej6D_
100.0 44 PDB header:oxidoreductase
Chain: D: PDB Molecule:catalase-3;
PDBTitle: neurospora crassa catalase-3 crystal structure
3c2iufA_
100.0 45 PDB header:oxidoreductase
Chain: A: PDB Molecule:catalase;
PDBTitle: the structures of penicillium vitale catalase: resting2 state, oxidised state (compound i) and complex with3 aminotriazole
4c1sy7B_
100.0 50 PDB header:oxidoreductase
Chain: B: PDB Molecule:catalase 1;
PDBTitle: crystal structure of the catalase-1 from neurospora crassa, native2 structure at 1.75a resolution.
5d1p80a2
100.0 100 Fold:Heme-dependent catalase-like
Superfamily:Heme-dependent catalase-like
Family:Heme-dependent catalases
6c2j2mD_
100.0 43 PDB header:oxidoreductase
Chain: D: PDB Molecule:catalase;
PDBTitle: crystal structure analysis of catalase from exiguobacterium2 oxidotolerans
7d1qwla_
100.0 44 Fold:Heme-dependent catalase-like
Superfamily:Heme-dependent catalase-like
Family:Heme-dependent catalases
8d1e93a_
100.0 42 Fold:Heme-dependent catalase-like
Superfamily:Heme-dependent catalase-like
Family:Heme-dependent catalases
9d1gwea_
100.0 38 Fold:Heme-dependent catalase-like
Superfamily:Heme-dependent catalase-like
Family:Heme-dependent catalases
10d1m7sa_
100.0 39 Fold:Heme-dependent catalase-like
Superfamily:Heme-dependent catalase-like
Family:Heme-dependent catalases
11d1si8a_
100.0 44 Fold:Heme-dependent catalase-like
Superfamily:Heme-dependent catalase-like
Family:Heme-dependent catalases
12d4blca_
100.0 40 Fold:Heme-dependent catalase-like
Superfamily:Heme-dependent catalase-like
Family:Heme-dependent catalases
13d1dgfa_
100.0 39 Fold:Heme-dependent catalase-like
Superfamily:Heme-dependent catalase-like
Family:Heme-dependent catalases
14c2xq1M_
100.0 42 PDB header:oxidoreductase
Chain: M: PDB Molecule:peroxisomal catalase;
PDBTitle: crystal structure of peroxisomal catalase from the yeast hansenula2 polymorpha
15d1a4ea_
100.0 39 Fold:Heme-dependent catalase-like
Superfamily:Heme-dependent catalase-like
Family:Heme-dependent catalases
16c1f4jC_
100.0 40 PDB header:oxidoreductase
Chain: C: PDB Molecule:catalase;
PDBTitle: structure of tetragonal crystals of human erythrocyte2 catalase
17c1ye9E_
100.0 100 PDB header:oxidoreductase
Chain: E: PDB Molecule:catalase hpii;
PDBTitle: crystal structure of proteolytically truncated catalase2 hpii from e. coli
18c1ye9A_
100.0 100 PDB header:oxidoreductase
Chain: A: PDB Molecule:catalase hpii;
PDBTitle: crystal structure of proteolytically truncated catalase2 hpii from e. coli
19d1u5ua_
100.0 18 Fold:Heme-dependent catalase-like
Superfamily:Heme-dependent catalase-like
Family:Allene oxide synthase
20c3e4wB_
100.0 25 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a 33kda catalase-related protein from2 mycobacterium avium subsp. paratuberculosis. p2(1)2(1)2(1) crystal3 form.
21c3dy5A_
not modelled 100.0 19 PDB header:lyase, oxidoreductase
Chain: A: PDB Molecule:allene oxide synthase-lipoxygenase protein;
PDBTitle: allene oxide synthase 8r-lipoxygenase from plexaura homomalla
22d1p80a1
not modelled 100.0 100 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Catalase, C-terminal domain
23d1sy7a1
not modelled 100.0 30 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Catalase, C-terminal domain
24c3fseB_
not modelled 99.6 21 PDB header:hydrolase
Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and
PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution
25d1g2ia_
not modelled 99.6 18 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
26d1oi4a1
not modelled 99.6 15 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
27c3uk7B_
not modelled 99.5 19 PDB header:transferase
Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing
PDBTitle: crystal structure of arabidopsis thaliana dj-1d
28c2vrnA_
not modelled 99.5 24 PDB header:hydrolase
Chain: A: PDB Molecule:protease i;
PDBTitle: the structure of the stress response protein dr1199 from2 deinococcus radiodurans: a member of the dj-1 superfamily
29c3cneD_
not modelled 99.5 18 PDB header:hydrolase
Chain: D: PDB Molecule:putative protease i;
PDBTitle: crystal structure of the putative protease i from bacteroides2 thetaiotaomicron
30c3ot1B_
not modelled 99.4 15 PDB header:structural genomics
Chain: B: PDB Molecule:4-methyl-5(b-hydroxyethyl)-thiazole monophosphate
PDBTitle: crystal structure of vc2308 protein
31d1p5fa_
not modelled 99.4 14 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
32d1vhqa_
not modelled 99.4 18 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
33c3kklA_
not modelled 99.3 13 PDB header:hydrolase
Chain: A: PDB Molecule:probable chaperone protein hsp33;
PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae
34d2fexa1
not modelled 99.3 15 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
35c3ewnA_
not modelled 99.3 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:thij/pfpi family protein;
PDBTitle: crystal structure of a thij/pfpi family protein from pseudomonas2 syringae
36c3mgkA_
not modelled 99.2 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:intracellular protease/amidase related enzyme
PDBTitle: crystal structure of probable protease/amidase from2 clostridium acetobutylicum atcc 824
37c3efeC_
not modelled 99.2 13 PDB header:chaperone
Chain: C: PDB Molecule:thij/pfpi family protein;
PDBTitle: the crystal structure of the thij/pfpi family protein from bacillus2 anthracis
38c3l3bA_
not modelled 99.2 18 PDB header:biosynthetic protein
Chain: A: PDB Molecule:es1 family protein;
PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution
39c3nooB_
not modelled 99.2 20 PDB header:lyase
Chain: B: PDB Molecule:thij/pfpi family protein;
PDBTitle: crystal structure of c101a isocyanide hydratase from pseudomonas2 fluorescens
40d1u9ca_
not modelled 99.2 22 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
41c3f5dA_
not modelled 99.1 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ydea;
PDBTitle: crystal structure of a protein of unknown function from2 bacillus subtilis
42d2ab0a1
not modelled 99.1 13 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
43d1qvwa_
not modelled 99.1 18 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
44c3graA_
not modelled 99.0 16 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, arac family;
PDBTitle: crystal structure of arac family transcriptional regulator from2 pseudomonas putida
45c3n7tA_
not modelled 99.0 14 PDB header:protein binding
Chain: A: PDB Molecule:macrophage binding protein;
PDBTitle: crystal structure of a macrophage binding protein from coccidioides2 immitis
46c3bhnA_
not modelled 98.9 12 PDB header:unknown function
Chain: A: PDB Molecule:thij/pfpi domain protein;
PDBTitle: crystal structure of a dj-1/pfpi-like protein (shew_2856) from2 shewanella loihica pv-4 at 1.76 a resolution
47c3er6D_
not modelled 98.8 10 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:putative transcriptional regulator protein;
PDBTitle: crystal structure of a putative transcriptional regulator2 protein from vibrio parahaemolyticus
48d1n57a_
not modelled 98.8 20 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
49d1t3ta2
not modelled 97.8 15 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
50d1q7ra_
not modelled 97.4 18 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
51c3d54D_
not modelled 97.2 15 PDB header:ligase
Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1;
PDBTitle: stucture of purlqs from thermotoga maritima
52d1o1ya_
not modelled 97.1 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
53d2nv0a1
not modelled 97.0 20 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
54d1ka9h_
not modelled 97.0 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
55c2issF_
not modelled 96.9 21 PDB header:lyase, transferase
Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima
56c2ywjA_
not modelled 96.7 20 PDB header:transferase
Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: crystal structure of uncharacterized conserved protein from2 methanocaldococcus jannaschii
57c3l7nA_
not modelled 96.7 12 PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of smu.1228c
58d1a9xb2
not modelled 96.4 18 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
59c2ywdA_
not modelled 96.2 23 PDB header:transferase
Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: crystal structure of glutamine amidotransferase
60d2abwa1
not modelled 96.0 12 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
61d1jvna2
not modelled 96.0 24 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
62d1wl8a1
not modelled 95.9 17 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
63d1k9vf_
not modelled 95.7 11 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
64c3l83A_
not modelled 95.6 12 PDB header:transferase
Chain: A: PDB Molecule:glutamine amido transferase;
PDBTitle: crystal structure of glutamine amido transferase from methylobacillus2 flagellatus
65c1keeH_
not modelled 95.4 19 PDB header:ligase
Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain;
PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin
66d1i1qb_
not modelled 95.3 15 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
67d1gpma2
not modelled 95.2 14 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
68d1vcoa1
not modelled 95.2 15 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
69d2a9va1
not modelled 95.0 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
70c3r74B_
not modelled 94.9 15 PDB header:lyase, biosynthetic protein
Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i;
PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383
71c3fijD_
not modelled 94.6 16 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:lin1909 protein;
PDBTitle: crystal structure of a uncharacterized protein lin1909
72c1jvnB_
not modelled 94.5 25 PDB header:transferase
Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf;
PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites
73d2ghra1
not modelled 94.5 8 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:HTS-like
74d1qdlb_
not modelled 93.9 12 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
75c1vcnA_
not modelled 93.9 16 PDB header:ligase
Chain: A: PDB Molecule:ctp synthetase;
PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion
76c2w7tA_
not modelled 93.4 17 PDB header:ligase
Chain: A: PDB Molecule:putative cytidine triphosphate synthase;
PDBTitle: trypanosoma brucei ctps - glutaminase domain with bound2 acivicin
77c2ad5B_
not modelled 92.5 16 PDB header:ligase
Chain: B: PDB Molecule:ctp synthase;
PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution.
78c1t3tA_
not modelled 92.5 16 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase;
PDBTitle: structure of formylglycinamide synthetase
79c1l9xA_
not modelled 92.0 14 PDB header:hydrolase
Chain: A: PDB Molecule:gamma-glutamyl hydrolase;
PDBTitle: structure of gamma-glutamyl hydrolase
80d1l9xa_
not modelled 92.0 14 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
81d1i7qb_
not modelled 92.0 14 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
82c3nvaB_
not modelled 90.8 22 PDB header:ligase
Chain: B: PDB Molecule:ctp synthase;
PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus
83d1s1ma1
not modelled 89.5 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
84c3tqiB_
not modelled 87.9 20 PDB header:ligase
Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii
85c3l4eA_
not modelled 85.7 18 PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized peptidase lmo0363;
PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e
86c2vpiA_
not modelled 85.5 18 PDB header:ligase
Chain: A: PDB Molecule:gmp synthase;
PDBTitle: human gmp synthetase - glutaminase domain
87c2v4uA_
not modelled 85.5 17 PDB header:ligase
Chain: A: PDB Molecule:ctp synthase 2;
PDBTitle: human ctp synthetase 2 - glutaminase domain in complex with2 5-oxo-l-norleucine
88c3lqkA_
not modelled 84.7 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:dipicolinate synthase subunit b;
PDBTitle: crystal structure of dipicolinate synthase subunit b from bacillus2 halodurans c
89c1gpmD_
not modelled 83.9 14 PDB header:transferase (glutamine amidotransferase)
Chain: D: PDB Molecule:gmp synthetase;
PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate
90c3mcuF_
not modelled 83.8 20 PDB header:oxidoreductase
Chain: F: PDB Molecule:dipicolinate synthase, b chain;
PDBTitle: crystal structure of the dipicolinate synthase chain b from2 bacillus cereus. northeast structural genomics consortium3 target bcr215.
91c2ywcC_
not modelled 82.1 19 PDB header:ligase
Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp
92d1u9ya1
not modelled 79.4 22 Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosylpyrophosphate synthetase-like
93d1tc1a_
not modelled 77.4 8 Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
94c3m4xA_
not modelled 74.6 21 PDB header:transferase
Chain: A: PDB Molecule:nol1/nop2/sun family protein;
PDBTitle: structure of a ribosomal methyltransferase
95d2qv7a1
not modelled 74.1 16 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
96c3uowB_
not modelled 70.9 17 PDB header:ligase
Chain: B: PDB Molecule:gmp synthetase;
PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum
97c3ragA_
not modelled 70.7 9 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein aaci_0196 from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446
98d2c4ka1
not modelled 70.5 19 Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosylpyrophosphate synthetase-like
99c2qv7A_
not modelled 69.7 15 PDB header:transferase
Chain: A: PDB Molecule:diacylglycerol kinase dgkb;
PDBTitle: crystal structure of diacylglycerol kinase dgkb in complex with adp2 and mg
100d1vcha1
not modelled 69.4 16 Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
101c2f59B_
not modelled 66.5 18 PDB header:transferase
Chain: B: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1;
PDBTitle: lumazine synthase ribh1 from brucella abortus (gene bruab1_0785,2 swiss-prot entry q57dy1) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione
102d1dkua1
not modelled 66.3 17 Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosylpyrophosphate synthetase-like
103c3m6wA_
not modelled 66.1 27 PDB header:transferase
Chain: A: PDB Molecule:rrna methylase;
PDBTitle: multi-site-specific 16s rrna methyltransferase rsmf from thermus2 thermophilus in space group p21212 in complex with s-adenosyl-l-3 methionine
104d1l5xa_
not modelled 65.4 13 Fold:SurE-like
Superfamily:SurE-like
Family:SurE-like
105c3lpnB_
not modelled 63.5 22 PDB header:transferase
Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase;
PDBTitle: crystal structure of the phosphoribosylpyrophosphate (prpp) synthetase2 from thermoplasma volcanium in complex with an atp analog (ampcpp).
106c3k9cA_
not modelled 61.5 16 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family protein;
PDBTitle: crystal structure of laci transcriptional regulator from rhodococcus2 species.
107d1dxha2
not modelled 61.5 13 Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
108d2gmqa1
not modelled 60.5 29 Fold:PUA domain-like
Superfamily:PUA domain-like
Family:PrgU-like
109c3okfA_
not modelled 59.8 23 PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae
110c2phjA_
not modelled 57.9 19 PDB header:hydrolase
Chain: A: PDB Molecule:5'-nucleotidase sure;
PDBTitle: crystal structure of sure protein from aquifex aeolicus
111d1gph11
not modelled 57.4 19 Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
112c3dahB_
not modelled 57.2 23 PDB header:transferase
Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase;
PDBTitle: 2.3 a crystal structure of ribose-phosphate pyrophosphokinase from2 burkholderia pseudomallei
113c2vxoB_
not modelled 57.0 12 PDB header:ligase
Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: human gmp synthetase in complex with xmp
114c2v4oB_
not modelled 56.5 13 PDB header:hydrolase
Chain: B: PDB Molecule:multifunctional protein sur e;
PDBTitle: crystal structure of salmonella typhimurium sure at 2.752 angstrom resolution in monoclinic form
115c2xggB_
not modelled 55.8 17 PDB header:hydrolase
Chain: B: PDB Molecule:microneme protein 2;
PDBTitle: structure of toxoplasma gondii micronemal protein 2 a_i2 domain
116c2frxD_
not modelled 54.4 22 PDB header:transferase
Chain: D: PDB Molecule:hypothetical protein yebu;
PDBTitle: crystal structure of yebu, a m5c rna methyltransferase from e.coli
117c2e6gI_
not modelled 53.5 18 PDB header:hydrolase
Chain: I: PDB Molecule:5'-nucleotidase sure;
PDBTitle: crystal structure of the stationary phase survival protein sure from2 thermus thermophilus hb8 in complex with phosphate
118c2c4kD_
not modelled 52.3 19 PDB header:regulatory protein
Chain: D: PDB Molecule:phosphoribosyl pyrophosphate synthetase-
PDBTitle: crystal structure of human phosphoribosylpyrophosphate2 synthetase-associated protein 39 (pap39)
119d2g0ta1
not modelled 51.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
120c2obxH_
not modelled 50.6 12 PDB header:transferase
Chain: H: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1;
PDBTitle: lumazine synthase ribh2 from mesorhizobium loti (gene mll7281, swiss-2 prot entry q986n2) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0