Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	I	R	S	Q	V	G	M	V	L	N	L	D	K	C	I	G	C	H	T	C	S	V	T	C	K	N	V	W	T	S	R	E	G	V	E	Y	A	W	F	N	N	V	E	T	K	P	G	Q	G	F	P	T	D	W	E	N	Q	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																											?	?												?	?	?	?	?	?	?	?		?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	Y	K	G	G	W	I	R	K	I	N	G	K	L	Q	P	R	M	G	N	R	A	M	L	L	G	K	I	F	A	N	P	H	L	P	G	I	D	D	Y	Y	E	P	F	D	F	D	Y	Q	N	L	H	T	A	P	E	G	S	K	S
Secondary structure
SS confidence
Disorder																		?			?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	P	I	A	R	P	R	S	L	I	T	G	E	R	M	A	K	I	E	K	G	P	N	W	E	D	D	L	G	G	E	F	D	K	L	A	K	D	K	N	F	D	N	I	Q	K	A	M	Y	S	Q	F	E	N	T	F	M	M	Y	L
Secondary structure
SS confidence
Disorder																															?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		P	R	L	C	E	H	C	L	N	P	A	C	V	A	T	C	P	S	G	A	I	Y	K	R	E	E	D	G	I	V	L	I	D	Q	D	K	C	R	G	W	R	M	C	I	T	G	C	P	Y	K	K	I	Y	F	N	W	K	S	G	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	E	K	C	I	F	C	Y	P	R	I	E	A	G	Q	P	T	V	C	S	E	T	C	V	G	R	I	R	Y	L	G	V	L	L	Y	D	A	D	A	I	E	R	A	A	S	T	E	N	E	K	D	L	Y	Q	R	Q	L	D	V	F
Secondary structure
SS confidence
Disorder																																														?	?	?	?	?	?		?							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	D	P	N	D	P	K	V	I	E	Q	A	I	K	D	G	I	P	L	S	V	I	E	A	A	Q	Q	S	P	V	Y	K	M	A	M	E	W	K	L	A	L	P	L	H	P	E	Y	R	T	L	P	M	V	W	Y	V	P	P	L	S
Secondary structure
SS confidence
Disorder																								?	?	?	?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		P	I	Q	S	A	A	D	A	G	E	L	G	S	N	G	I	L	P	D	V	E	S	L	R	I	P	V	Q	Y	L	A	N	L	L	T	A	G	D	T	K	P	V	L	R	A	L	K	R	M	L	A	M	R	H	Y	K	R	A	E	T
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?	?	?	?	?	?	?	?	?		?	?	?	?	?	?	?																																				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		V	D	G	K	V	D	T	R	A	L	E	E	V	G	L	T	E	A	Q	A	Q	E	M	Y	R	Y	L	A	I	A	N	Y	E	D	R	F	V	V	P	S	S	H	R	E	L	A	R	E	A	F	P	E	K	N	G	C	G	F	T	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?									?	?	?																																?	?			?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Sequence		G	D	G	C	H	G	S	D	T	K	F	N	L	F	N	S	R	R	I	D	A	I	D	V	T	S	K	T	E	P	H	P
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?				?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1y5i chain B domain 1 Region: 1 - 509 Aligned: 509 Modelled: 509 Confidence: 100.0% Identity: 100% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2ivf chain B Region: 4 - 434 Aligned: 327 Modelled: 332 Confidence: 100.0% Identity: 41% PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum Phyre2 PDB 1ti2 chain F Region: 4 - 356 Aligned: 185 Modelled: 188 Confidence: 100.0% Identity: 35% PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici Phyre2 PDB 1kqf chain B domain 1 Region: 2 - 356 Aligned: 203 Modelled: 215 Confidence: 100.0% Identity: 28% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2vpy chain B Region: 4 - 358 Aligned: 180 Modelled: 182 Confidence: 100.0% Identity: 39% PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) Phyre2 PDB 1hfe chain L Region: 162 - 480 Aligned: 272 Modelled: 281 Confidence: 100.0% Identity: 14% PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans Phyre2 PDB 1kqf chain B Region: 4 - 291 Aligned: 177 Modelled: 193 Confidence: 100.0% Identity: 27% PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli Phyre2 PDB 1gx7 chain A Region: 177 - 480 Aligned: 257 Modelled: 264 Confidence: 100.0% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase Phyre2 PDB 1c4c chain A Region: 203 - 475 Aligned: 254 Modelled: 261 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum Phyre2 PDB 1vlf chain N domain 2 Region: 4 - 355 Aligned: 184 Modelled: 187 Confidence: 100.0% Identity: 35% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1h0h chain B Region: 8 - 361 Aligned: 197 Modelled: 209 Confidence: 100.0% Identity: 26% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1hfe chain L domain 1 Region: 273 - 475 Aligned: 193 Modelled: 203 Confidence: 99.9% Identity: 12% Fold: Fe-only hydrogenase Superfamily: Fe-only hydrogenase Family: Fe-only hydrogenase Phyre2 PDB 3c8y chain A domain 1 Region: 273 - 475 Aligned: 193 Modelled: 200 Confidence: 99.9% Identity: 13% Fold: Fe-only hydrogenase Superfamily: Fe-only hydrogenase Family: Fe-only hydrogenase Phyre2 PDB 3lx4 chain B Region: 277 - 477 Aligned: 191 Modelled: 201 Confidence: 99.9% Identity: 16% PDB header:oxidoreductase Chain: B: PDB Molecule:fe-hydrogenase; PDBTitle: stepwise [fefe]-hydrogenase h-cluster assembly revealed in the2 structure of hyda(deltaefg) Phyre2 PDB 3gyx chain J Region: 177 - 305 Aligned: 128 Modelled: 129 Confidence: 99.4% Identity: 19% PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas Phyre2 PDB 1jnr chain B Region: 177 - 276 Aligned: 100 Modelled: 100 Confidence: 99.4% Identity: 18% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 7fd1 chain A Region: 178 - 237 Aligned: 58 Modelled: 60 Confidence: 99.3% Identity: 26% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 PDB 2v2k chain B Region: 178 - 285 Aligned: 100 Modelled: 108 Confidence: 99.3% Identity: 21% PDB header:electron transport Chain: B: PDB Molecule:ferredoxin; PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis Phyre2 PDB 1h98 chain A Region: 178 - 255 Aligned: 76 Modelled: 78 Confidence: 99.3% Identity: 22% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 PDB 3c7b chain B domain 1 Region: 177 - 232 Aligned: 56 Modelled: 56 Confidence: 99.2% Identity: 27% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 1 d1y5ib1 2 c2ivfB_ 3 c1ti2F_ 4 d1kqfb1 5 c2vpyB_ 6 c1hfeL_ 7 c1kqfB_ 8 c1gx7A_ 9 c1c4cA_ 10 d1vlfn2 11 d1h0hb_ 12 d1hfel1 13 d3c8ya1 14 c3lx4B_ 15 c3gyxJ_ 16 d1jnrb_ 17 d7fd1a_ 18 c2v2kB_ 19 d1h98a_ 20 d3c7bb1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1y5ib1 100.0 100 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 2 c2ivfB_ 100.0 41 PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 3 c1ti2F_ 100.0 35 PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici 4 d1kqfb1 100.0 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 5 c2vpyB_ 100.0 39 PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) 6 c1hfeL_ 100.0 14 PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans 7 c1kqfB_ 100.0 27 PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli 8 c1gx7A_ 100.0 15 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase 9 c1c4cA_ 100.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum 10 d1vlfn2 100.0 35 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 11 d1h0hb_ 100.0 26 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 12 d1hfel1 99.9 12 Fold:Fe-only hydrogenase Superfamily:Fe-only hydrogenase Family:Fe-only hydrogenase 13 d3c8ya1 99.9 13 Fold:Fe-only hydrogenase Superfamily:Fe-only hydrogenase Family:Fe-only hydrogenase 14 c3lx4B_ 99.9 16 PDB header:oxidoreductase Chain: B: PDB Molecule:fe-hydrogenase; PDBTitle: stepwise [fefe]-hydrogenase h-cluster assembly revealed in the2 structure of hyda(deltaefg) 15 c3gyxJ_ 99.4 19 PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas 16 d1jnrb_ 99.4 18 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 17 d7fd1a_ 99.3 26 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 18 c2v2kB_ 99.3 21 PDB header:electron transport Chain: B: PDB Molecule:ferredoxin; PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis 19 d1h98a_ 99.3 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 20 d3c7bb1 99.2 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 21 d1bc6a_ not modelled 99.2 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 22 c1gthD_ not modelled 99.2 19 PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil 23 d1hfel2 not modelled 99.1 20 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 24 d1clfa_ not modelled 99.0 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 25 d1fcaa_ not modelled 98.9 29 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 26 d1dura_ not modelled 98.9 30 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 27 c2gmhA_ not modelled 98.9 21 PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone 28 d2fdna_ not modelled 98.9 31 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 29 d2fug91 not modelled 98.9 30 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 30 c2fugG_ not modelled 98.9 30 PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 31 c3c7bE_ not modelled 98.8 25 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 32 d2gmha3 not modelled 98.8 17 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:ETF-QO domain-like 33 c2zvsB_ not modelled 98.8 30 PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli 34 d1gtea5 not modelled 98.8 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 35 d1blua_ not modelled 98.7 26 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 36 c2c3yA_ not modelled 98.7 29 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus 37 c2fgoA_ not modelled 98.7 28 PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa 38 d1xera_ not modelled 98.7 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Archaeal ferredoxins 39 d2c42a5 not modelled 98.6 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 40 d1rgva_ not modelled 98.6 34 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 41 d1jb0c_ not modelled 98.6 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 42 c2v4jE_ not modelled 98.6 23 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 43 c3bk7A_ not modelled 98.5 35 PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii 44 d1vjwa_ not modelled 98.4 17 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 45 c2v4jA_ not modelled 98.4 20 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 46 c3c7bA_ not modelled 98.4 26 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 47 d3c8ya3 not modelled 98.3 19 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 48 d1iqza_ not modelled 97.9 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 49 d2fug34 not modelled 97.9 14 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 50 c1dwlA_ not modelled 97.8 21 PDB header:electron transfer Chain: A: PDB Molecule:ferredoxin i; PDBTitle: the ferredoxin-cytochrome complex using heteronuclear nmr2 and docking simulation 51 c2fugC_ not modelled 97.6 26 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 52 d1fxra_ not modelled 97.5 18 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 53 d1sj1a_ not modelled 97.4 16 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 54 d2v4jb1 not modelled 97.4 33 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 55 c3cf4A_ not modelled 97.0 28 PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 56 d2bs2b1 not modelled 95.9 20 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 57 d1kf6b1 not modelled 95.6 25 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 58 d1nekb1 not modelled 95.5 28 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 59 c2bs2E_ not modelled 95.3 20 PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes 60 c1nekB_ not modelled 95.2 24 PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound 61 c2b76N_ not modelled 94.8 19 PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation 62 c2h89B_ not modelled 94.5 20 PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound 63 d2v4ja1 not modelled 93.8 29 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 64 d3c7ba1 not modelled 93.3 35 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 65 c2vdcI_ not modelled 90.6 23 PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. 66 d1ugpa_ not modelled 69.9 31 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 67 d1gtea1 not modelled 65.9 31 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Dihydropyrimidine dehydrogenase, N-terminal domain 68 d2d6fc2 not modelled 64.4 26 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 69 d1oe4a_ not modelled 60.9 19 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 70 d1zq1c2 not modelled 59.3 25 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 71 c2z6vA_ not modelled 50.9 31 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of sulfotransferase stf9 from2 mycobacterium avium 72 c2dxbR_ not modelled 46.3 31 PDB header:hydrolase Chain: R: PDB Molecule:thiocyanate hydrolase subunit gamma; PDBTitle: recombinant thiocyanate hydrolase comprising partially-modified cobalt2 centers 73 c2d6fC_ not modelled 37.9 20 PDB header:ligase/rna Chain: C: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit e; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln) 74 c3qyhG_ not modelled 35.3 18 PDB header:lyase Chain: G: PDB Molecule:co-type nitrile hydratase alpha subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-h71l from2 pseudomonas putida. 75 d1ujpa_ not modelled 34.5 14 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 76 c1m2oA_ not modelled 33.0 25 PDB header:protein transport/signaling protein Chain: A: PDB Molecule:protein transport protein sec23; PDBTitle: crystal structure of the sec23-sar1 complex 77 c1g8jC_ not modelled 31.9 26 PDB header:oxidoreductase Chain: C: PDB Molecule:arsenite oxidase; PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis 78 c3ktwA_ not modelled 25.2 17 PDB header:rna/rna binding protein Chain: A: PDB Molecule:signal recognition particle 19 kda protein; PDBTitle: crystal structure of the srp19/s-domain srp rna complex of sulfolobus2 solfataricus 79 d1brwa2 not modelled 24.0 12 Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 80 d1jida_ not modelled 23.4 13 Fold:SRP19 Superfamily:SRP19 Family:SRP19 81 d2phpa1 not modelled 22.9 18 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:Phosphomethylpyrimidine kinase C-terminal domain-like 82 c3eg9B_ not modelled 22.7 25 PDB header:protein transport Chain: B: PDB Molecule:sec24 related gene family, member d; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin 83 d1djqa3 not modelled 22.5 45 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like 84 d2nyga1 not modelled 22.3 14 Fold:TTHA0583/YokD-like Superfamily:TTHA0583/YokD-like Family:Aminoglycoside 3-N-acetyltransferase-like 85 d1a9xa1 not modelled 21.8 15 Fold:Carbamoyl phosphate synthetase, large subunit connection domain Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain Family:Carbamoyl phosphate synthetase, large subunit connection domain 86 d1fxda_ not modelled 21.4 29 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 87 c3gxgA_ not modelled 20.6 18 PDB header:hydrolase Chain: A: PDB Molecule:putative phosphatase (duf442); PDBTitle: crystal structure of putative phosphatase (duf442) (yp_001181608.1)2 from shewanella putrefaciens cn-32 at 1.60 a resolution 88 c2fugA_ not modelled 18.6 27 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 89 d1uoua2 not modelled 17.2 10 Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 90 c3dluA_ not modelled 17.0 16 PDB header:rna binding protein Chain: A: PDB Molecule:signal recognition particle 19 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. 91 c3fpnA_ not modelled 16.9 16 PDB header:dna binding protein Chain: A: PDB Molecule:geobacillus stearothermophilus uvra interaction PDBTitle: crystal structure of uvra-uvrb interaction domains 92 c3a5iB_ not modelled 16.6 14 PDB header:protein transport Chain: B: PDB Molecule:flagellar biosynthesis protein flha; PDBTitle: structure of the cytoplasmic domain of flha 93 c3c6fD_ not modelled 15.6 15 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:yetf protein; PDBTitle: crystal structure of protein bsu07140 from bacillus subtilis 94 d1ddfa_ not modelled 15.5 18 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 95 c2wj8N_ not modelled 15.0 20 PDB header:rna binding protein/rna Chain: N: PDB Molecule:nucleoprotein; PDBTitle: respiratory syncitial virus ribonucleoprotein 96 c1z63A_ not modelled 14.9 10 PDB header:hydrolase/dna complex Chain: A: PDB Molecule:helicase of the snf2/rad54 hamily; PDBTitle: sulfolobus solfataricus swi2/snf2 atpase core in complex2 with dsdna 97 c2x49A_ not modelled 14.8 14 PDB header:protein transport Chain: A: PDB Molecule:invasion protein inva; PDBTitle: crystal structure of the c-terminal domain of inva 98 c1m2vB_ not modelled 14.5 26 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the yeast sec23/24 heterodimer 99 c1moxB_ not modelled 14.1 24 PDB header:transferase/growth factor Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: crystal structure of human epidermal growth factor receptor (residues2 1-501) in complex with tgf-alpha

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0