Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3eg9B_

Fold library idPDB HeaderMoleculeTitle
c3eg9B_PDB header: protein transportChain: B: PDB Molecule: sec24 related gene family, member d;PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin


Added to library: Tue Mar 16 13:43:58 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AMGSPIQVIENDRASRGGQVYATNTRGQIPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIP
Predicted secondary structure


















































SS confidence





































































Known secondary structure (DSSP)



TTSTTSSS




TTS


SSS

TTTSBSSS


 .........80.........90.........100.........110.........120.........130.........140
Sequence LAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHL
Predicted secondary structure














































SS confidence





































































Known secondary structure (DSSP)

TT



TTS





TTT
S
B
TTT

BS
TTGGGTTTT



GGG



 .........150.........160.........170.........180.........190.........200.........210
Sequence DHIGRRLDHYEKPELSLGSYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKI
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP)
SSS
TTTGGG

S

GGGSGGGS





STTGGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence PKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVGEVFVPLLDGFLVNYQESQSVIHNLLDQ
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)


TTSSS


SSS

TT
SS


TTS




SSSSSB
TTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence IPDMFADSNENETVFAPVIQAGMEALKAADCPGKLFIFHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQ
Predicted secondary structure










































SS confidence





































































Known secondary structure (DSSP) TTT







TS

S


SSSTT









SS
S
GGGGGS
 .........360.........370.........380.........390.........400.........410.........420
Sequence PQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQQFLNDLRNDIE
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP)
SSSTT

SS


TTT


TT

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence KKIGFDAIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDKLSEDSGALIQCAVLYT
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)


TTSS
B
SSSSSS

SS


TTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence TISGQRRLRIHNLGLNCSSQLADLYKSCETDALINFFAKSAFKAVLHQPLKVIREILVNQTAHMLACYRK
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP)
TTS
S
TB
TTTS
 .........570.........580.........590.........600.........610.........620.........630
Sequence NCASPSAASQLILPDSMKVLPVYMNCLLKNCVLLSRPEISTDERAYQRQLVMTMGVADSQLFFYPQLLPI
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) TS



TT




GGGTTSTTTS
SSSS


S

 .........640.........650.........660.........670.........680.........690.........700
Sequence HTLDVKSTMLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELIQGIFNVPSFAHINTDMTLLPEV
Predicted secondary structure












































SS confidence





































































Known secondary structure (DSSP) TT

SSS
S



B
SSGGG

TT

SS
TT

SSSSGGG

TT

S



 .........710.........720.........730.........740.........750.........760.......
Sequence GNPYSQQLRMIMGIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDKGGSSYVDFLCCVHKEICQLLN
Predicted secondary structure




















SS confidence


































































Known secondary structure (DSSP)
SSTT
SS

STTSTTT
TTS




T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D