Phyre 2 alignment of P11349 with c3fpnA_

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Job Description | P11349
Confidence | 16.92% | Date | Thu Jan 5 11:32:35 GMT 2012
Rank | 91 | Aligned Residues | 45
% Identity | 16% | Template | c3fpnA_
PDB info | PDB header:dna binding protein | Chain: A: PDB Molecule:geobacillus stearothermophilus uvra interaction | PDBTitle: crystal structure of uvra-uvrb interaction domains
Resolution | 1.80 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 277 | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | D | A | I | E | R | A | A | S | T | E | N | E | K | D | L | Y | Q | R | Q | L | D | V | F | L | D | P | N | D | P | K | V | I | E | Q | A | I | K | D | G | I | P | L | S | V | I | E
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | V | D | R | L | L | S | Y | P | E | R | T | K | M | Q | I | L | A | P | I | V | S | G | K | K | G | T | H | A | . | . | K | T | L | E | D | I | R | K | Q | G | Y | V | R | V | R | I | D
Template Known Secondary structure |  |  |  |  |  |  | T | S |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |  |  |  | . | . |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 136 | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . |  |  | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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