Phyre 2 alignment of P11349 with c1m2vB_

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Job Description | P11349
Confidence | 14.47% | Date | Thu Jan 5 11:32:35 GMT 2012
Rank | 98 | Aligned Residues | 50
% Identity | 26% | Template | c1m2vB_
PDB info | PDB header:protein transport | Chain: B: PDB Molecule:protein transport protein sec24; | PDBTitle: crystal structure of the yeast sec23/24 heterodimer
Resolution | 2.75 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 195 | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . |  |  |  | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | T | C | P | S | G | A | I | Y | K | R | E | E | D | G | I | V | L | I | D | Q | D | . | . | . | K | C | R | G | W | R | M | C | I | T | G | C | P | Y | K | K | I | Y | F | N | W | K | S | G | K | S | E | K | C | I | F | C | Y | P | R
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | I | R | P | Y | Q | H | L | Y | . | D | D | I | D | P | P | P | L | N | E | D | G | L | I | V | R | C | R | R | C | R | S | . | . | Y | M | N | P | F | V | T | F | . | . | . | I | E | Q | G | R | R | W | R | C | N | F | C | R | L | A
Template Known Secondary structure |  |  |  | S |  |  | S | S | S | . | T | T | S | S |  |  |  |  |  |  | S |  |  |  |  | B |  | S | S | S |  |  | . | . | B |  |  | T | T |  |  |  | . | . | . |  | T | T | T | T |  |  |  |  | T | T | T |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 207 | . | . | 210 | . | . | . | . |  | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . |  |  | . | . | . | 240 | . | . | . | . |  |  |  | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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