Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	S	N	N	G	E	A	K	I	Q	K	V	K	N	W	S	P	V	W	I	F	P	I	V	T	A	L	I	G	A	W	V	L	F	Y	H	Y	S	H	Q	G	P	E	V	T	L	I	T	A	N	A	E	G	I	E	G	G	K	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																																					?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	I	K	S	R	S	V	D	V	G	V	V	E	S	A	T	L	A	D	D	L	T	H	V	E	I	K	A	R	L	N	S	G	M	E	K	L	L	H	K	D	T	V	F	W	V	V	K	P	Q	I	G	R	E	G	I	S	G	L	G
Secondary structure
SS confidence
Disorder																			?	?	?																													?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	L	L	S	G	V	Y	I	E	L	Q	P	G	A	K	G	S	K	M	D	K	Y	D	L	L	D	S	P	P	L	A	P	P	D	A	K	G	I	R	V	I	L	D	S	K	K	A	G	Q	L	S	P	G	D	P	V	L	F	R	G
Secondary structure
SS confidence
Disorder		?	?	?	?							?		?	?	?	?	?	?	?	?	?	?	?						?	?	?	?	?		?		?								?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Y	R	V	G	S	V	E	T	S	T	F	D	T	Q	K	R	N	I	S	Y	Q	L	F	I	N	A	P	Y	D	R	L	V	T	N	N	V	R	F	W	K	D	S	G	I	A	V	D	L	T	S	A	G	M	R	V	E	M	G	S	L
Secondary structure
SS confidence
Disorder															?																																			?	?	?	?	?				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		T	T	L	L	S	G	G	V	S	F	D	V	P	E	G	L	D	L	G	Q	P	V	A	P	K	T	A	F	V	L	Y	D	D	Q	K	S	I	Q	D	S	L	Y	T	D	H	I	D	Y	L	M	F	F	K	D	S	V	R	G	L	Q
Secondary structure
SS confidence
Disorder															?	?	?	?	?	?	?	?	?	?	?															?	?	?		?															?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		P	G	A	P	V	E	F	R	G	I	R	L	G	T	V	S	K	V	P	F	F	A	P	N	M	R	Q	T	F	N	D	D	Y	R	I	P	V	L	I	R	I	E	P	E	R	L	K	M	Q	L	G	E	N	A	D	V	V	E	H	L
Secondary structure
SS confidence
Disorder		?																					?	?		?	?	?	?	?	?	?	?												?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		G	E	L	L	K	R	G	L	R	G	S	L	K	T	G	N	L	V	T	G	A	L	Y	V	D	L	D	F	Y	P	N	T	P	A	I	T	G	I	R	E	F	N	G	Y	Q	I	I	P	T	V	S	G	G	L	A	Q	I	Q	Q	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?		?	?					?	?	?	?	?	?	?	?	?						?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?							?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		L	M	E	A	L	D	K	I	N	K	L	P	L	N	P	M	I	E	Q	A	T	S	T	L	S	E	S	Q	R	T	M	K	N	L	Q	T	T	L	D	S	M	N	K	I	L	A	S	Q	S	M	Q	Q	L	P	T	D	M	Q	S	T
Secondary structure
SS confidence
Disorder												?	?																																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		L	R	E	L	N	R	S	M	Q	G	F	Q	P	G	S	A	A	Y	N	K	M	V	A	D	M	Q	R	L	D	Q	V	L	R	E	L	Q	P	V	L	K	T	L	N	E	K	S	N	A	L	V	F	E	A	K	D	K	K	D	P	E
Secondary structure
SS confidence
Disorder																																																			?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.
Sequence		P	K	R	A	K	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1pj5 chain A domain 1 Region: 44 - 106 Aligned: 59 Modelled: 63 Confidence: 93.4% Identity: 17% Fold: Elongation factor/aminomethyltransferase common domain Superfamily: Aminomethyltransferase beta-barrel domain Family: Aminomethyltransferase beta-barrel domain Phyre2 PDB 1v5v chain A domain 1 Region: 44 - 106 Aligned: 59 Modelled: 63 Confidence: 90.3% Identity: 17% Fold: Elongation factor/aminomethyltransferase common domain Superfamily: Aminomethyltransferase beta-barrel domain Family: Aminomethyltransferase beta-barrel domain Phyre2 PDB 1wos chain A domain 1 Region: 44 - 107 Aligned: 60 Modelled: 64 Confidence: 87.9% Identity: 17% Fold: Elongation factor/aminomethyltransferase common domain Superfamily: Aminomethyltransferase beta-barrel domain Family: Aminomethyltransferase beta-barrel domain Phyre2 PDB 1v5v chain A Region: 44 - 106 Aligned: 59 Modelled: 63 Confidence: 84.2% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of a component of glycine cleavage system: t-protein2 from pyrococcus horikoshii ot3 at 1.5 a resolution Phyre2 PDB 1qu7 chain A Region: 407 - 529 Aligned: 123 Modelled: 123 Confidence: 78.6% Identity: 9% PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor Phyre2 PDB 3gir chain A Region: 44 - 106 Aligned: 60 Modelled: 63 Confidence: 75.4% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of glycine cleavage system2 aminomethyltransferase t from bartonella henselae Phyre2 PDB 1wor chain A Region: 44 - 109 Aligned: 61 Modelled: 66 Confidence: 75.3% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of t-protein of the glycine cleavage2 system Phyre2 PDB 2wpq chain A Region: 432 - 524 Aligned: 91 Modelled: 93 Confidence: 74.7% Identity: 5% PDB header:membrane protein Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment; PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (2 sadak3, in-register fusion) Phyre2 PDB 2j5u chain B Region: 44 - 211 Aligned: 126 Modelled: 138 Confidence: 73.9% Identity: 16% PDB header:cell shape regulation Chain: B: PDB Molecule:mrec protein; PDBTitle: mrec lysteria monocytogenes Phyre2 PDB 1ei3 chain C Region: 407 - 542 Aligned: 135 Modelled: 136 Confidence: 72.9% Identity: 13% PDB header: PDB COMPND: Phyre2 PDB 1yx2 chain B Region: 158 - 210 Aligned: 53 Modelled: 53 Confidence: 72.6% Identity: 23% PDB header:transferase Chain: B: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of the probable aminomethyltransferase2 from bacillus subtilis Phyre2 PDB 1pj6 chain A Region: 44 - 106 Aligned: 59 Modelled: 63 Confidence: 68.4% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:n,n-dimethylglycine oxidase; PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid Phyre2 PDB 2ieq chain C Region: 435 - 523 Aligned: 86 Modelled: 89 Confidence: 67.9% Identity: 17% PDB header:viral protein Chain: C: PDB Molecule:spike glycoprotein; PDBTitle: core structure of s2 from the human coronavirus nl63 spike2 glycoprotein Phyre2 PDB 2qf4 chain A Region: 44 - 211 Aligned: 130 Modelled: 136 Confidence: 64.9% Identity: 15% PDB header:structural protein Chain: A: PDB Molecule:cell shape determining protein mrec; PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form) Phyre2 PDB 1vlo chain A domain 1 Region: 44 - 106 Aligned: 56 Modelled: 63 Confidence: 63.6% Identity: 18% Fold: Elongation factor/aminomethyltransferase common domain Superfamily: Aminomethyltransferase beta-barrel domain Family: Aminomethyltransferase beta-barrel domain Phyre2 PDB 3tfh chain B Region: 34 - 106 Aligned: 69 Modelled: 73 Confidence: 58.3% Identity: 14% PDB header:transferase Chain: B: PDB Molecule:gcvt-like aminomethyltransferase protein; PDBTitle: dmsp-dependent demethylase from p. ubique - apo Phyre2 PDB 1c99 chain A Region: 18 - 35 Aligned: 18 Modelled: 18 Confidence: 57.5% Identity: 28% Fold: Transmembrane helix hairpin Superfamily: F1F0 ATP synthase subunit C Family: F1F0 ATP synthase subunit C Phyre2 PDB 2d4y chain A Region: 450 - 530 Aligned: 81 Modelled: 81 Confidence: 53.0% Identity: 11% PDB header:structural protein Chain: A: PDB Molecule:flagellar hook-associated protein 1; PDBTitle: crystal structure of a 49k fragment of hap1 (flgk) Phyre2 PDB 3g67 chain A Region: 414 - 529 Aligned: 111 Modelled: 111 Confidence: 51.8% Identity: 5% PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima Phyre2 PDB 1txk chain A domain 2 Region: 102 - 134 Aligned: 33 Modelled: 32 Confidence: 50.8% Identity: 24% Fold: Supersandwich Superfamily: Galactose mutarotase-like Family: MdoG-like Phyre2 1 d1pj5a1 2 d1v5va1 3 d1wosa1 4 c1v5vA_ 5 c1qu7A_ 6 c3girA_ 7 c1worA_ 8 c2wpqA_ 9 c2j5uB_ 10 c1ei3C_ 11 c1yx2B_ 12 c1pj6A_ 13 c2ieqC_ 14 c2qf4A_ 15 d1vloa1 16 c3tfhB_ 17 d1c99a_ 18 c2d4yA_ 19 c3g67A_ 20 d1txka2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1pj5a1 93.4 17 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:Aminomethyltransferase beta-barrel domain Family:Aminomethyltransferase beta-barrel domain 2 d1v5va1 90.3 17 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:Aminomethyltransferase beta-barrel domain Family:Aminomethyltransferase beta-barrel domain 3 d1wosa1 87.9 17 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:Aminomethyltransferase beta-barrel domain Family:Aminomethyltransferase beta-barrel domain 4 c1v5vA_ 84.2 17 PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of a component of glycine cleavage system: t-protein2 from pyrococcus horikoshii ot3 at 1.5 a resolution 5 c1qu7A_ 78.6 9 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor 6 c3girA_ 75.4 15 PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of glycine cleavage system2 aminomethyltransferase t from bartonella henselae 7 c1worA_ 75.3 18 PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of t-protein of the glycine cleavage2 system 8 c2wpqA_ 74.7 5 PDB header:membrane protein Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment; PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (2 sadak3, in-register fusion) 9 c2j5uB_ 73.9 16 PDB header:cell shape regulation Chain: B: PDB Molecule:mrec protein; PDBTitle: mrec lysteria monocytogenes 10 c1ei3C_ 72.9 13 PDB header: PDB COMPND: 11 c1yx2B_ 72.6 23 PDB header:transferase Chain: B: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of the probable aminomethyltransferase2 from bacillus subtilis 12 c1pj6A_ 68.4 17 PDB header:oxidoreductase Chain: A: PDB Molecule:n,n-dimethylglycine oxidase; PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid 13 c2ieqC_ 67.9 17 PDB header:viral protein Chain: C: PDB Molecule:spike glycoprotein; PDBTitle: core structure of s2 from the human coronavirus nl63 spike2 glycoprotein 14 c2qf4A_ 64.9 15 PDB header:structural protein Chain: A: PDB Molecule:cell shape determining protein mrec; PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form) 15 d1vloa1 63.6 18 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:Aminomethyltransferase beta-barrel domain Family:Aminomethyltransferase beta-barrel domain 16 c3tfhB_ 58.3 14 PDB header:transferase Chain: B: PDB Molecule:gcvt-like aminomethyltransferase protein; PDBTitle: dmsp-dependent demethylase from p. ubique - apo 17 d1c99a_ 57.5 28 Fold:Transmembrane helix hairpin Superfamily:F1F0 ATP synthase subunit C Family:F1F0 ATP synthase subunit C 18 c2d4yA_ 53.0 11 PDB header:structural protein Chain: A: PDB Molecule:flagellar hook-associated protein 1; PDBTitle: crystal structure of a 49k fragment of hap1 (flgk) 19 c3g67A_ 51.8 5 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima 20 d1txka2 50.8 24 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:MdoG-like 21 c1kmiZ_ not modelled 49.0 12 PDB header:signaling protein Chain: Z: PDB Molecule:chemotaxis protein chez; PDBTitle: crystal structure of an e.coli chemotaxis protein, chez 22 c1wsrA_ not modelled 48.0 15 PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of human t-protein of glycine cleavage2 system 23 d1fftb2 not modelled 46.5 21 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 24 c1txkA_ not modelled 46.2 24 PDB header:biosynthetic protein Chain: A: PDB Molecule:glucans biosynthesis protein g; PDBTitle: crystal structure of escherichia coli opgg 25 c3lnrA_ not modelled 40.7 13 PDB header:signaling protein Chain: A: PDB Molecule:aerotaxis transducer aer2; PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2 26 d1vp7b_ not modelled 36.6 17 Fold:Spectrin repeat-like Superfamily:XseB-like Family:XseB-like 27 c2ch7A_ not modelled 35.6 7 PDB header:chemotaxis Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima 28 c1wyyB_ not modelled 35.1 15 PDB header:viral protein Chain: B: PDB Molecule:e2 glycoprotein; PDBTitle: post-fusion hairpin conformation of the sars coronavirus spike2 glycoprotein 29 c1ei3E_ not modelled 35.0 9 PDB header: PDB COMPND: 30 c1deqF_ not modelled 31.7 6 PDB header: PDB COMPND: 31 c2vs0B_ not modelled 31.2 9 PDB header:cell invasion Chain: B: PDB Molecule:virulence factor esxa; PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa 32 d1jz8a3 not modelled 30.3 11 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 33 c3gvmA_ not modelled 30.1 8 PDB header:viral protein Chain: A: PDB Molecule:putative uncharacterized protein sag1039; PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae 34 d1eq1a_ not modelled 29.0 10 Fold:Apolipophorin-III Superfamily:Apolipophorin-III Family:Apolipophorin-III 35 d1yq2a3 not modelled 27.6 15 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 36 d1szia_ not modelled 27.3 11 Fold:Four-helical up-and-down bundle Superfamily:Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain Family:Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain 37 c1kqsA_ not modelled 27.0 19 PDB header:ribosome Chain: A: PDB Molecule:ribosomal protein l2; PDBTitle: the haloarcula marismortui 50s complexed with a2 pretranslocational intermediate in protein synthesis 38 d1ucua_ not modelled 26.9 8 Fold:Phase 1 flagellin Superfamily:Phase 1 flagellin Family:Phase 1 flagellin 39 d1g4us1 not modelled 25.6 19 Fold:Four-helical up-and-down bundle Superfamily:Bacterial GAP domain Family:Bacterial GAP domain 40 d1v58a2 not modelled 25.5 17 Fold:Cystatin-like Superfamily:DsbC/DsbG N-terminal domain-like Family:DsbC/DsbG N-terminal domain-like 41 c1deqO_ not modelled 24.7 14 PDB header: PDB COMPND: 42 c2kebA_ not modelled 24.6 21 PDB header:dna binding protein Chain: A: PDB Molecule:dna polymerase subunit alpha b; PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit 43 c3k8wA_ not modelled 22.6 10 PDB header:structural protein Chain: A: PDB Molecule:flagellin homolog; PDBTitle: crysatl structure of a bacterial cell-surface flagellin n20c45 44 c3izcN_ not modelled 22.4 16 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein rpl14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 45 c2kbbA_ not modelled 21.9 11 PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: nmr structure of the talin rod domain, 1655-1822 46 d1im3d_ not modelled 21.5 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Cytomegalovirus protein US2 47 d2axte1 not modelled 21.3 15 Fold:Single transmembrane helix Superfamily:Cytochrome b559 subunits Family:Cytochrome b559 subunits 48 c2d4xA_ not modelled 21.3 6 PDB header:structural protein Chain: A: PDB Molecule:flagellar hook-associated protein 3; PDBTitle: crystal structure of a 26k fragment of hap3 (flgl) 49 d1gtra1 not modelled 21.0 16 Fold:Ribosomal protein L25-like Superfamily:Ribosomal protein L25-like Family:Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain 50 c2nrjA_ not modelled 21.0 15 PDB header:toxin Chain: A: PDB Molecule:hbl b protein; PDBTitle: crystal structure of hemolysin binding component from2 bacillus cereus 51 d1lvfa_ not modelled 20.4 11 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 52 c2gl2B_ not modelled 20.2 14 PDB header:cell adhesion Chain: B: PDB Molecule:adhesion a; PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,2 y69g) of bacterial adhesin fada 53 c3ghgK_ not modelled 18.4 8 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 54 c1x31A_ not modelled 18.4 15 PDB header:oxidoreductase Chain: A: PDB Molecule:sarcosine oxidase alpha subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 55 c3o0lB_ not modelled 18.1 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution 56 d1dowa_ not modelled 17.9 11 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 57 c4a19F_ not modelled 17.4 19 PDB header:ribosome Chain: F: PDB Molecule:rpl14; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 2. 58 c3k8vB_ not modelled 17.0 10 PDB header:structural protein Chain: B: PDB Molecule:flagellin homolog; PDBTitle: crysatl structure of a bacterial cell-surface flagellin n20c20 59 d1wrda1 not modelled 16.9 18 Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:GAT domain 60 d2zjrs1 not modelled 16.3 20 Fold:Ribosomal protein L25-like Superfamily:Ribosomal protein L25-like Family:Ribosomal protein L25-like 61 d1bhua_ not modelled 16.1 23 Fold:gamma-Crystallin-like Superfamily:gamma-Crystallin-like Family:Streptomyces metalloproteinase inhibitor, SMPI 62 d1dova_ not modelled 15.5 11 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 63 c1vloA_ not modelled 15.4 18 PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of aminomethyltransferase (t protein;2 tetrahydrofolate-dependent) of glycine cleavage system (np417381)3 from escherichia coli k12 at 1.70 a resolution 64 c3o5aB_ not modelled 15.4 18 PDB header:oxidoreductase Chain: B: PDB Molecule:diheme cytochrome c napb; PDBTitle: crystal structure of partially reduced periplasmic nitrate reductase2 from cupriavidus necator using ionic liquids 65 c1rkeA_ not modelled 14.9 10 PDB header:cell adhesion, structural protein Chain: A: PDB Molecule:vinculin; PDBTitle: human vinculin head (1-258) in complex with human vinculin2 tail (879-1066) 66 c3ojaB_ not modelled 14.8 10 PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex 67 d2cp5a1 not modelled 14.7 11 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 68 d1bhga2 not modelled 14.6 16 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 69 c3ls1A_ not modelled 13.4 18 PDB header:photosynthesis Chain: A: PDB Molecule:sll1638 protein; PDBTitle: crystal structure of cyanobacterial psbq from synechocystis2 sp. pcc 6803 complexed with zn2+ 70 d1pa4a_ not modelled 13.0 44 Fold:Alpha-lytic protease prodomain-like Superfamily:Ribosome-binding factor A, RbfA Family:Ribosome-binding factor A, RbfA 71 d1feua_ not modelled 13.0 14 Fold:Ribosomal protein L25-like Superfamily:Ribosomal protein L25-like Family:Ribosomal protein L25-like 72 c3iz5N_ not modelled 12.8 14 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 73 c2dq3A_ not modelled 12.8 11 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of aq_298 74 c2kncA_ not modelled 12.6 35 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 75 c1vlyA_ not modelled 12.6 10 PDB header:transferase Chain: A: PDB Molecule:unknown protein from 2d-page; PDBTitle: crystal structure of a putative aminomethyltransferase (ygfz) from2 escherichia coli at 1.30 a resolution 76 c1zvzA_ not modelled 12.6 9 PDB header:protein binding Chain: A: PDB Molecule:vinculin; PDBTitle: vinculin head (0-258) in complex with the talin rod residue2 820-844 77 d2cp2a1 not modelled 11.9 16 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 78 d1kkga_ not modelled 11.8 19 Fold:Alpha-lytic protease prodomain-like Superfamily:Ribosome-binding factor A, RbfA Family:Ribosome-binding factor A, RbfA 79 c3nmbA_ not modelled 11.0 64 PDB header:hydrolase Chain: A: PDB Molecule:putative sugar hydrolase; PDBTitle: crystal structure of a putative sugar hydrolase (bacova_03189) from2 bacteroides ovatus at 2.40 a resolution 80 d1wa8a1 not modelled 10.8 11 Fold:Ferritin-like Superfamily:EsxAB dimer-like Family:ESAT-6 like 81 d1qoua_ not modelled 10.5 11 Fold:PEBP-like Superfamily:PEBP-like Family:Phosphatidylethanolamine binding protein 82 c3hd7A_ not modelled 10.4 8 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 83 d2coza1 not modelled 10.4 14 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 84 d1sj8a2 not modelled 10.4 10 Fold:I/LWEQ domain Superfamily:I/LWEQ domain Family:I/LWEQ domain 85 c1exdA_ not modelled 10.3 19 PDB header:ligase/rna Chain: A: PDB Molecule:glutaminyl-trna synthetase; PDBTitle: crystal structure of a tight-binding glutamine trna bound2 to glutamine aminoacyl trna synthetase 86 c1m57H_ not modelled 10.1 18 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant)) 87 c3dshA_ not modelled 10.0 17 PDB header:dna binding protein Chain: A: PDB Molecule:interferon regulatory factor 5; PDBTitle: crystal structure of dimeric interferon regulatory factor 5 (irf-5)2 transactivation domain 88 c1urqC_ not modelled 9.9 14 PDB header:transport protein Chain: C: PDB Molecule:synaptosomal-associated protein 25; PDBTitle: crystal structure of neuronal q-snares in complex with2 r-snare motif of tomosyn 89 d1t01a1 not modelled 9.9 15 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 90 c3lw9B_ not modelled 9.8 24 PDB header:protein transport Chain: B: PDB Molecule:invasion protein inva; PDBTitle: structure of a cytoplasmic domain of salmonella inva 91 c1zoqA_ not modelled 9.8 25 PDB header:transcription/transferase Chain: A: PDB Molecule:interferon regulatory factor 3; PDBTitle: irf3-cbp complex 92 c2kzfA_ not modelled 9.7 13 PDB header:ribosomal protein Chain: A: PDB Molecule:ribosome-binding factor a; PDBTitle: solution nmr structure of the thermotoga maritima protein tm0855 a2 putative ribosome binding factor a 93 c3h3lB_ not modelled 9.7 38 PDB header:hydrolase Chain: B: PDB Molecule:putative sugar hydrolase; PDBTitle: crystal structure of putative sugar hydrolase (yp_001304206.1) from2 parabacteroides distasonis atcc 8503 at 1.59 a resolution 94 c2dnxA_ not modelled 9.6 16 PDB header:transport protein Chain: A: PDB Molecule:syntaxin-12; PDBTitle: solution structure of rsgi ruh-063, an n-terminal domain of2 syntaxin 12 from human cdna 95 d1wgba_ not modelled 9.5 13 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:NADH:FMN oxidoreductase-like 96 c3hbkA_ not modelled 9.4 55 PDB header:hydrolase Chain: A: PDB Molecule:putative glycosyl hydrolase; PDBTitle: crystal structure of putative glycosyl hydrolase, was domain of2 unknown function (duf1080) (yp_001302580.1) from parabacteroides3 distasonis atcc 8503 at 2.36 a resolution 97 c1cn3F_ not modelled 9.4 25 PDB header:viral protein Chain: F: PDB Molecule:fragment of coat protein vp2; PDBTitle: interaction of polyomavirus internal protein vp2 with major2 capsid protein vp1 and implications for participation of3 vp2 in viral entry 98 c1pkvB_ not modelled 9.4 13 PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: the n-terminal domain of riboflavin synthase in complex with2 riboflavin 99 c1pkvA_ not modelled 9.4 13 PDB header:transferase Chain: A: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: the n-terminal domain of riboflavin synthase in complex with2 riboflavin

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0