Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	G	N	N	V	V	V	L	G	T	Q	W	G	D	E	G	K	G	K	I	V	D	L	L	T	E	R	A	K	Y	V	V	R	Y	Q	G	G	H	N	A	G	H	T	L	V	I	N	G	E	K	T	V	L	H	L	I	P	S	G	I
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	R	E	N	V	T	S	I	I	G	N	G	V	V	L	S	P	A	A	L	M	K	E	M	K	E	L	E	D	R	G	I	P	V	R	E	R	L	L	L	S	E	A	C	P	L	I	L	D	Y	H	V	A	L	D	N	A	R	E	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	R	G	A	K	A	I	G	T	T	G	R	G	I	G	P	A	Y	E	D	K	V	A	R	R	G	L	R	V	G	D	L	F	D	K	E	T	F	A	E	K	L	K	E	V	M	E	Y	H	N	F	Q	L	V	N	Y	Y	K	A	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	V	D	Y	Q	K	V	L	D	D	T	M	A	V	A	D	I	L	T	S	M	V	V	D	V	S	D	L	L	D	Q	A	R	Q	R	G	D	F	V	M	F	E	G	A	Q	G	T	L	L	D	I	D	H	G	T	Y	P	Y	V	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	S	N	T	T	A	G	G	V	A	T	G	S	G	L	G	P	R	Y	V	D	Y	V	L	G	I	L	K	A	Y	S	T	R	V	G	A	G	P	F	P	T	E	L	F	D	E	T	G	E	F	L	C	K	Q	G	N	E	F	G	A
Secondary structure
SS confidence
Disorder																																																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		T	T	G	R	R	R	R	T	G	W	L	D	T	V	A	V	R	R	A	V	Q	L	N	S	L	S	G	F	C	L	T	K	L	D	V	L	D	G	L	K	E	V	K	L	C	V	A	Y	R	M	P	D	G	R	E	V	T	T	T	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		L	A	A	D	D	W	K	G	V	E	P	I	Y	E	T	M	P	G	W	S	E	S	T	F	G	V	K	D	R	S	G	L	P	Q	A	A	L	N	Y	I	K	R	I	E	E	L	T	G	V	P	I	D	I	I	S	T	G	P	D	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.
Sequence		T	E	T	M	I	L	R	D	P	F	D	A
Secondary structure
SS confidence
Disorder							?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1qf5 chain A Region: 2 - 432 Aligned: 431 Modelled: 431 Confidence: 100.0% Identity: 100% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nitrogenase iron protein-like Phyre2 PDB 1dj2 chain A Region: 1 - 426 Aligned: 425 Modelled: 426 Confidence: 100.0% Identity: 44% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nitrogenase iron protein-like Phyre2 PDB 1dj3 chain A Region: 1 - 426 Aligned: 425 Modelled: 426 Confidence: 100.0% Identity: 44% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nitrogenase iron protein-like Phyre2 PDB 1iwe chain A Region: 2 - 426 Aligned: 420 Modelled: 425 Confidence: 100.0% Identity: 43% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nitrogenase iron protein-like Phyre2 PDB 1iwe chain B Region: 2 - 426 Aligned: 420 Modelled: 425 Confidence: 100.0% Identity: 43% PDB header:ligase Chain: B: PDB Molecule:adenylosuccinate synthetase; PDBTitle: imp complex of the recombinant mouse-muscle2 adenylosuccinate synthetase Phyre2 PDB 1p9b chain A Region: 2 - 427 Aligned: 418 Modelled: 426 Confidence: 100.0% Identity: 40% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nitrogenase iron protein-like Phyre2 PDB 3ue9 chain A Region: 2 - 431 Aligned: 413 Modelled: 430 Confidence: 100.0% Identity: 61% PDB header:ligase Chain: A: PDB Molecule:adenylosuccinate synthetase; PDBTitle: crystal structure of adenylosuccinate synthetase (ampsase) (pura) from2 burkholderia thailandensis Phyre2 PDB 3r7t chain A Region: 1 - 426 Aligned: 408 Modelled: 425 Confidence: 100.0% Identity: 47% PDB header:ligase Chain: A: PDB Molecule:adenylosuccinate synthetase; PDBTitle: crystal structure of adenylosuccinate synthetase from campylobacter2 jejuni Phyre2 PDB 2d7u chain A Region: 1 - 428 Aligned: 319 Modelled: 324 Confidence: 100.0% Identity: 43% PDB header:ligase Chain: A: PDB Molecule:adenylosuccinate synthetase; PDBTitle: crystal structure of hypothetical adenylosuccinate synthetase, ph04382 from pyrococcus horikoshii ot3 Phyre2 PDB 1a0i chain A domain 1 Region: 7 - 40 Aligned: 34 Modelled: 34 Confidence: 88.4% Identity: 24% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: DNA ligase/mRNA capping enzyme postcatalytic domain Phyre2 PDB 1p9p chain A Region: 70 - 152 Aligned: 78 Modelled: 78 Confidence: 57.7% Identity: 19% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: tRNA(m1G37)-methyltransferase TrmD Phyre2 PDB 3fwz chain A Region: 1 - 32 Aligned: 30 Modelled: 32 Confidence: 54.0% Identity: 27% PDB header:membrane protein Chain: A: PDB Molecule:inner membrane protein ybal; PDBTitle: crystal structure of trka-n domain of inner membrane protein ybal from2 escherichia coli Phyre2 PDB 1ual chain A Region: 70 - 151 Aligned: 77 Modelled: 77 Confidence: 54.0% Identity: 19% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: tRNA(m1G37)-methyltransferase TrmD Phyre2 PDB 2jfg chain A domain 1 Region: 2 - 94 Aligned: 87 Modelled: 89 Confidence: 53.2% Identity: 21% Fold: MurCD N-terminal domain Superfamily: MurCD N-terminal domain Family: MurCD N-terminal domain Phyre2 PDB 3knu chain D Region: 70 - 151 Aligned: 76 Modelled: 82 Confidence: 52.3% Identity: 21% PDB header:transferase Chain: D: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (guanine-n1)-methyltransferase from2 anaplasma phagocytophilum Phyre2 PDB 1zgx chain A Region: 382 - 405 Aligned: 24 Modelled: 24 Confidence: 49.6% Identity: 25% PDB header:hydrolase Chain: A: PDB Molecule:guanyl-specific ribonuclease sa; PDBTitle: crystal structure of ribonuclease mutant Phyre2 PDB 2f09 chain A domain 1 Region: 21 - 60 Aligned: 39 Modelled: 40 Confidence: 44.9% Identity: 10% Fold: Streptavidin-like Superfamily: YdhA-like Family: YdhA-like Phyre2 PDB 3ky7 chain A Region: 70 - 152 Aligned: 75 Modelled: 75 Confidence: 43.7% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: 2.35 angstrom resolution crystal structure of a putative trna2 (guanine-7-)-methyltransferase (trmd) from staphylococcus aureus3 subsp. aureus mrsa252 Phyre2 PDB 1qwd chain A Region: 15 - 104 Aligned: 86 Modelled: 90 Confidence: 39.7% Identity: 15% Fold: Lipocalins Superfamily: Lipocalins Family: Retinol binding protein-like Phyre2 PDB 1gm5 chain A domain 2 Region: 129 - 153 Aligned: 25 Modelled: 25 Confidence: 35.5% Identity: 28% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: RecG "wedge" domain Phyre2 1 d1qf5a_ 2 d1dj2a_ 3 d1dj3a_ 4 d1iwea_ 5 c1iweB_ 6 d1p9ba_ 7 c3ue9A_ 8 c3r7tA_ 9 c2d7uA_ 10 d1a0ia1 11 d1p9pa_ 12 c3fwzA_ 13 d1uala_ 14 d2jfga1 15 c3knuD_ 16 c1zgxA_ 17 d2f09a1 18 c3ky7A_ 19 d1qwda_ 20 d1gm5a2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1qf5a_ 100.0 100 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 2 d1dj2a_ 100.0 44 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 3 d1dj3a_ 100.0 44 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 4 d1iwea_ 100.0 43 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 5 c1iweB_ 100.0 43 PDB header:ligase Chain: B: PDB Molecule:adenylosuccinate synthetase; PDBTitle: imp complex of the recombinant mouse-muscle2 adenylosuccinate synthetase 6 d1p9ba_ 100.0 40 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 7 c3ue9A_ 100.0 61 PDB header:ligase Chain: A: PDB Molecule:adenylosuccinate synthetase; PDBTitle: crystal structure of adenylosuccinate synthetase (ampsase) (pura) from2 burkholderia thailandensis 8 c3r7tA_ 100.0 47 PDB header:ligase Chain: A: PDB Molecule:adenylosuccinate synthetase; PDBTitle: crystal structure of adenylosuccinate synthetase from campylobacter2 jejuni 9 c2d7uA_ 100.0 43 PDB header:ligase Chain: A: PDB Molecule:adenylosuccinate synthetase; PDBTitle: crystal structure of hypothetical adenylosuccinate synthetase, ph04382 from pyrococcus horikoshii ot3 10 d1a0ia1 88.4 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain 11 d1p9pa_ 57.7 19 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 12 c3fwzA_ 54.0 27 PDB header:membrane protein Chain: A: PDB Molecule:inner membrane protein ybal; PDBTitle: crystal structure of trka-n domain of inner membrane protein ybal from2 escherichia coli 13 d1uala_ 54.0 19 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 14 d2jfga1 53.2 21 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 15 c3knuD_ 52.3 21 PDB header:transferase Chain: D: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (guanine-n1)-methyltransferase from2 anaplasma phagocytophilum 16 c1zgxA_ 49.6 25 PDB header:hydrolase Chain: A: PDB Molecule:guanyl-specific ribonuclease sa; PDBTitle: crystal structure of ribonuclease mutant 17 d2f09a1 44.9 10 Fold:Streptavidin-like Superfamily:YdhA-like Family:YdhA-like 18 c3ky7A_ 43.7 23 PDB header:transferase Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: 2.35 angstrom resolution crystal structure of a putative trna2 (guanine-7-)-methyltransferase (trmd) from staphylococcus aureus3 subsp. aureus mrsa252 19 d1qwda_ 39.7 15 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 20 d1gm5a2 35.5 28 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RecG "wedge" domain 21 c3iefA_ not modelled 34.3 25 PDB header:transferase, rna binding protein Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna guanine-n1-methyltransferase from2 bartonella henselae using mpcs. 22 c2ixaA_ not modelled 34.2 18 PDB header:hydrolase Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase; PDBTitle: a-zyme, n-acetylgalactosaminidase 23 c2qioA_ not modelled 32.3 8 PDB header:unknown function Chain: A: PDB Molecule:enoyl-(acyl-carrier-protein) reductase; PDBTitle: x-ray structure of enoyl-acyl carrier protein reductase from bacillus2 anthracis with triclosan 24 d1jsca3 not modelled 30.9 14 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase PP module 25 c1k1qA_ not modelled 28.4 16 PDB header:transcription Chain: A: PDB Molecule:dbh protein; PDBTitle: crystal structure of a dinb family error prone dna2 polymerase from sulfolobus solfataricus 26 c3dnfB_ not modelled 26.3 22 PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PDBTitle: structure of (e)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase,2 the terminal enzyme of the non-mevalonate pathway 27 c3quvB_ not modelled 26.0 16 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of a trna-guanine-n1-methyltransferase from2 mycobacterium abscessus 28 d1lt7a_ not modelled 24.8 21 Fold:TIM beta/alpha-barrel Superfamily:Homocysteine S-methyltransferase Family:Homocysteine S-methyltransferase 29 c2xf4A_ not modelled 24.6 19 PDB header:hydrolase Chain: A: PDB Molecule:hydroxyacylglutathione hydrolase; PDBTitle: crystal structure of salmonella enterica serovar2 typhimurium ycbl 30 c3opyE_ not modelled 24.3 12 PDB header:transferase Chain: E: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 31 d1k1ga_ not modelled 23.4 29 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 32 d1g7oa1 not modelled 22.3 14 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 33 d1e6ca_ not modelled 22.3 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK) 34 c2nm0B_ not modelled 21.6 19 PDB header:oxidoreductase Chain: B: PDB Molecule:probable 3-oxacyl-(acyl-carrier-protein) reductase; PDBTitle: crystal structure of sco1815: a beta-ketoacyl-acyl carrier protein2 reductase from streptomyces coelicolor a3(2) 35 c1kyqC_ not modelled 21.5 17 PDB header:oxidoreductase, lyase Chain: C: PDB Molecule:siroheme biosynthesis protein met8; PDBTitle: met8p: a bifunctional nad-dependent dehydrogenase and2 ferrochelatase involved in siroheme synthesis. 36 d1hywa_ not modelled 20.0 41 Fold:gpW/XkdW-like Superfamily:Head-to-tail joining protein W, gpW Family:Head-to-tail joining protein W, gpW 37 c2inrA_ not modelled 19.6 18 PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: crystal structure of a 59 kda fragment of topoisomerase iv subunit a2 (grla) from staphylococcus aureus 38 d1lnia_ not modelled 18.8 25 Fold:Microbial ribonucleases Superfamily:Microbial ribonucleases Family:Bacterial ribonucleases 39 c3p19A_ not modelled 18.6 19 PDB header:oxidoreductase Chain: A: PDB Molecule:putative blue fluorescent protein; PDBTitle: improved nadph-dependent blue fluorescent protein 40 c2z2vA_ not modelled 18.6 30 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical protein ph1688; PDBTitle: crystal structure of l-lysine dehydrogenase from2 hyperthermophilic archaeon pyrococcus horikoshii 41 c2cfcB_ not modelled 18.3 16 PDB header:oxidoreductase Chain: B: PDB Molecule:2-(r)-hydroxypropyl-com dehydrogenase; PDBTitle: structural basis for stereo selectivity in the (r)- and2 (s)-hydroxypropylethane thiosulfonate dehydrogenases 42 c3db2C_ not modelled 18.0 15 PDB header:oxidoreductase Chain: C: PDB Molecule:putative nadph-dependent oxidoreductase; PDBTitle: crystal structure of a putative nadph-dependent oxidoreductase2 (dhaf_2064) from desulfitobacterium hafniense dcb-2 at 1.70 a3 resolution 43 c2gr2A_ not modelled 18.0 38 PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin reductase; PDBTitle: crystal structure of ferredoxin reductase, bpha4 (oxidized form) 44 c2wfbA_ not modelled 17.7 17 PDB header:biosynthetic protein Chain: A: PDB Molecule:putative uncharacterized protein orp; PDBTitle: high resolution structure of the apo form of the orange2 protein (orp) from desulfovibrio gigas 45 d1d7ya1 not modelled 17.7 42 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 46 d1oy5a_ not modelled 17.6 14 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 47 c1oy5B_ not modelled 17.6 14 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (m1g37) methyltransferase from aquifex2 aeolicus 48 c1yfsB_ not modelled 17.5 13 PDB header:ligase Chain: B: PDB Molecule:alanyl-trna synthetase; PDBTitle: the crystal structure of alanyl-trna synthetase in complex2 with l-alanine 49 d2i1qa1 not modelled 17.4 15 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 50 c3ktsA_ not modelled 17.4 14 PDB header:transcriptional regulator Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein; PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365 51 d1k1sa2 not modelled 17.0 16 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 52 d1qyia_ not modelled 16.9 22 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein MW1667 (SA1546) 53 d1qnaa1 not modelled 16.7 12 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 54 d1nh2a1 not modelled 16.5 11 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 55 d1jx4a2 not modelled 16.3 18 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 56 c2zzfA_ not modelled 16.0 15 PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of alanyl-trna synthetase without2 oligomerization domain 57 c3f6zB_ not modelled 15.9 25 PDB header:hydrolase Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of pseudomonas aeruginosa mlic in complex2 with hen egg white lysozyme 58 d1q44a_ not modelled 15.8 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 59 c1ujlA_ not modelled 15.6 33 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily h PDBTitle: solution structure of the herg k+ channel s5-p2 extracellular linker 60 c3dtyA_ not modelled 15.3 18 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of an oxidoreductase from pseudomonas2 syringae 61 d1fi4a2 not modelled 15.1 56 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Mevalonate 5-diphosphate decarboxylase 62 d1y6ia1 not modelled 15.0 78 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:GUN4-associated domain 63 d1cora_ not modelled 14.8 18 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 64 d2bl5a1 not modelled 14.7 29 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 65 d1cdwa1 not modelled 14.6 12 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 66 d1uuqa_ not modelled 14.0 28 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 67 c1uz4A_ not modelled 14.0 28 PDB header:hydrolase Chain: A: PDB Molecule:man5a; PDBTitle: common inhibition of beta-glucosidase and beta-mannosidase2 by isofagomine lactam reflects different conformational3 intineraries for glucoside and mannoside hydrolysis 68 d1pzna1 not modelled 13.9 21 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 69 c2hivA_ not modelled 13.6 42 PDB header:ligase Chain: A: PDB Molecule:thermostable dna ligase; PDBTitle: atp-dependent dna ligase from s. solfataricus 70 d2bcqa2 not modelled 13.6 25 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 71 c2v7sA_ not modelled 13.5 28 PDB header:unknown function Chain: A: PDB Molecule:probable conserved lipoprotein lppa; PDBTitle: crystal structure of the putative lipoprotein lppa from2 mycobacterium tuberculosis 72 c1t3nB_ not modelled 13.4 22 PDB header:replication/dna Chain: B: PDB Molecule:polymerase (dna directed) iota; PDBTitle: structure of the catalytic core of dna polymerase iota in2 complex with dna and dttp 73 d1t6ca1 not modelled 13.4 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Ppx/GppA phosphatase 74 d1id1a_ not modelled 13.2 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Potassium channel NAD-binding domain 75 d1jmsa3 not modelled 13.1 38 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 76 d1znwa1 not modelled 12.8 32 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 77 c3c5yD_ not modelled 12.6 18 PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution 78 d1qsga_ not modelled 12.6 10 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 79 c2y0nD_ not modelled 12.6 13 PDB header:transcription Chain: D: PDB Molecule:male-specific lethal 3 homolog; PDBTitle: crystal structure of the complex between dosage2 compensation factors msl1 and msl3 80 d1riqa1 not modelled 12.4 13 Fold:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Superfamily:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Family:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 81 c3hi0B_ not modelled 12.3 23 PDB header:hydrolase Chain: B: PDB Molecule:putative exopolyphosphatase; PDBTitle: crystal structure of putative exopolyphosphatase (17739545) from2 agrobacterium tumefaciens str. c58 (dupont) at 2.30 a resolution 82 d1zeta2 not modelled 12.1 22 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 83 d1t94a2 not modelled 12.0 14 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 84 d1x9na2 not modelled 11.9 32 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain 85 d2a3ra1 not modelled 11.9 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 86 c1u9iA_ not modelled 11.6 12 PDB header:circadian clock protein Chain: A: PDB Molecule:kaic; PDBTitle: crystal structure of circadian clock protein kaic with phosphorylation2 sites 87 c1s97D_ not modelled 11.5 14 PDB header:transferase/dna Chain: D: PDB Molecule:dna polymerase iv; PDBTitle: dpo4 with gt mismatch 88 c2ovfA_ not modelled 11.4 4 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:stal; PDBTitle: crystal structure of stal-pap complex 89 d1a0rp_ not modelled 11.4 33 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Phosducin 90 c3o38D_ not modelled 11.2 18 PDB header:oxidoreductase Chain: D: PDB Molecule:short chain dehydrogenase; PDBTitle: crystal structure of a short chain dehydrogenase from mycobacterium2 smegmatis 91 c1ylmA_ not modelled 11.1 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein bsu32300; PDBTitle: structure of cytosolic protein of unknown function yute2 from bacillus subtilis 92 d2fmpa2 not modelled 11.0 38 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 93 d1fuea_ not modelled 10.9 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 94 d2vana1 not modelled 10.9 38 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 95 d2ppqa1 not modelled 10.8 14 Fold:Protein kinase-like (PK-like) Superfamily:Protein kinase-like (PK-like) Family:APH phosphotransferases 96 c3he8A_ not modelled 10.5 16 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b 97 c1fi4A_ not modelled 10.5 56 PDB header:lyase Chain: A: PDB Molecule:mevalonate 5-diphosphate decarboxylase; PDBTitle: the x-ray crystal structure of mevalonate 5-diphosphate decarboxylase2 at 2.3 angstrom resolution. 98 c3nbxX_ not modelled 10.5 21 PDB header:hydrolase Chain: X: PDB Molecule:atpase rava; PDBTitle: crystal structure of e. coli rava (regulatory atpase variant a) in2 complex with adp 99 c2fllA_ not modelled 10.5 22 PDB header:replication/dna Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: ternary complex of human dna polymerase iota with dna and dttp

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0