Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	R	A	F	A	R	L	L	L	R	I	C	F	S	R	R	T	L	K	I	A	C	L	L	L	L	V	A	G	A	T	I	L	I	A	D	R	V	M	V	N	A	S	K	Q	L	T	W	S	D	V	N	A	V	P	A	R	N	V
Secondary structure
SS confidence
Disorder		?	?																																										?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	L	L	L	G	A	R	P	G	N	R	Y	F	T	R	R	I	D	T	A	A	A	L	Y	H	A	G	K	V	K	W	L	L	V	S	G	D	N	G	R	K	N	Y	D	E	A	S	G	M	Q	Q	A	L	I	A	K	G	V	P	A
Secondary structure
SS confidence
Disorder																																									?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		K	V	I	F	C	D	Y	A	G	F	S	T	L	D	S	V	V	R	A	K	K	V	F	G	E	N	H	I	T	I	I	S	Q	E	F	H	N	Q	R	A	I	W	L	A	K	Q	Y	G	I	D	A	I	G	F	N	A	P	D	L	N
Secondary structure
SS confidence
Disorder																																																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Sequence		M	K	H	G	F	Y	T	Q	L	R	E	K	L	A	R	V	S	A	V	I	D	A	K	I	L	H	R	Q	P	K	Y	L	G	P	S	V	M	I	G	P	F	S	E	H	G	C	P	A	Q	K
Secondary structure
SS confidence
Disorder		?		?																																			?	?		?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3ca8 chain B Region: 51 - 167 Aligned: 112 Modelled: 112 Confidence: 99.9% Identity: 12% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ydcf; PDBTitle: crystal structure of escherichia coli ydcf, an s-adenosyl-l-methionine2 utilizing enzyme Phyre2 PDB 2zf8 chain A Region: 65 - 130 Aligned: 66 Modelled: 65 Confidence: 94.8% Identity: 15% PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty Phyre2 PDB 2aiz chain P domain 1 Region: 65 - 131 Aligned: 67 Modelled: 67 Confidence: 94.2% Identity: 22% Fold: Bacillus chorismate mutase-like Superfamily: OmpA-like Family: OmpA-like Phyre2 PDB 2hqs chain C domain 1 Region: 65 - 131 Aligned: 67 Modelled: 67 Confidence: 92.9% Identity: 22% Fold: Bacillus chorismate mutase-like Superfamily: OmpA-like Family: OmpA-like Phyre2 PDB 3k13 chain A Region: 75 - 171 Aligned: 97 Modelled: 94 Confidence: 92.8% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase; PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron Phyre2 PDB 1r1m chain A Region: 64 - 131 Aligned: 68 Modelled: 68 Confidence: 91.9% Identity: 19% Fold: Bacillus chorismate mutase-like Superfamily: OmpA-like Family: OmpA-like Phyre2 PDB 1r1m chain A Region: 64 - 131 Aligned: 68 Modelled: 68 Confidence: 91.9% Identity: 19% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein class 4; PDBTitle: structure of the ompa-like domain of rmpm from neisseria2 meningitidis Phyre2 PDB 2kgw chain A Region: 65 - 131 Aligned: 67 Modelled: 67 Confidence: 91.7% Identity: 15% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: solution structure of the carboxy-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis Phyre2 PDB 3khn chain B Region: 65 - 131 Aligned: 67 Modelled: 67 Confidence: 88.9% Identity: 13% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:motb protein, putative; PDBTitle: crystal structure of putative motb like protein dvu_22282 from desulfovibrio vulgaris. Phyre2 PDB 2k1s chain A Region: 65 - 131 Aligned: 67 Modelled: 67 Confidence: 88.2% Identity: 18% PDB header:lipoprotein Chain: A: PDB Molecule:inner membrane lipoprotein yiad; PDBTitle: solution nmr structure of the folded c-terminal fragment of yiad from2 escherichia coli. northeast structural genomics consortium target3 er553. Phyre2 PDB 2l26 chain A Region: 65 - 131 Aligned: 67 Modelled: 67 Confidence: 87.9% Identity: 16% PDB header:membrane protein Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922; PDBTitle: rv0899 from mycobacterium tuberculosis contains two separated domains Phyre2 PDB 3oon chain A Region: 65 - 129 Aligned: 65 Modelled: 65 Confidence: 86.8% Identity: 20% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein (tpn50); PDBTitle: the structure of an outer membrance protein from borrelia burgdorferi2 b31 Phyre2 PDB 2h9a chain A Region: 75 - 185 Aligned: 89 Modelled: 96 Confidence: 82.0% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:carbon monoxide dehydrogenase corrinoid/iron- PDBTitle: corrinoid iron-sulfur protein Phyre2 PDB 2h9a chain B Region: 76 - 142 Aligned: 63 Modelled: 67 Confidence: 81.4% Identity: 8% PDB header:oxidoreductase Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase, iron- PDBTitle: corrinoid iron-sulfur protein Phyre2 PDB 1p5d chain X domain 1 Region: 70 - 158 Aligned: 82 Modelled: 89 Confidence: 75.9% Identity: 17% Fold: Phosphoglucomutase, first 3 domains Superfamily: Phosphoglucomutase, first 3 domains Family: Phosphoglucomutase, first 3 domains Phyre2 PDB 1c7q chain A Region: 59 - 177 Aligned: 113 Modelled: 119 Confidence: 74.2% Identity: 14% Fold: SIS domain Superfamily: SIS domain Family: Phosphoglucose isomerase, PGI Phyre2 PDB 3td4 chain D Region: 64 - 131 Aligned: 68 Modelled: 68 Confidence: 74.0% Identity: 13% PDB header:membrane protein,peptide binding protein Chain: D: PDB Molecule:outer membrane protein omp38; PDBTitle: crystal structure of ompa-like domain from acinetobacter baumannii in2 complex with diaminopimelate Phyre2 PDB 3rhg chain A Region: 75 - 123 Aligned: 49 Modelled: 49 Confidence: 71.2% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:putative phophotriesterase; PDBTitle: crystal structure of amidohydrolase pmi1525 (target efi-500319) from2 proteus mirabilis hi4320 Phyre2 PDB 2rgy chain A Region: 70 - 170 Aligned: 101 Modelled: 101 Confidence: 67.1% Identity: 17% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of transcriptional regulator of laci family from2 burkhoderia phymatum Phyre2 PDB 3pmg chain A domain 1 Region: 85 - 158 Aligned: 70 Modelled: 74 Confidence: 66.8% Identity: 16% Fold: Phosphoglucomutase, first 3 domains Superfamily: Phosphoglucomutase, first 3 domains Family: Phosphoglucomutase, first 3 domains Phyre2 1 c3ca8B_ 2 c2zf8A_ 3 d2aizp1 4 d2hqsc1 5 c3k13A_ 6 d1r1ma_ 7 c1r1mA_ 8 c2kgwA_ 9 c3khnB_ 10 c2k1sA_ 11 c2l26A_ 12 c3oonA_ 13 c2h9aA_ 14 c2h9aB_ 15 d1p5dx1 16 d1c7qa_ 17 c3td4D_ 18 c3rhgA_ 19 c2rgyA_ 20 d3pmga1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ca8B_ 99.9 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ydcf; PDBTitle: crystal structure of escherichia coli ydcf, an s-adenosyl-l-methionine2 utilizing enzyme 2 c2zf8A_ 94.8 15 PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty 3 d2aizp1 94.2 22 Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like 4 d2hqsc1 92.9 22 Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like 5 c3k13A_ 92.8 18 PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase; PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron 6 d1r1ma_ 91.9 19 Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like 7 c1r1mA_ 91.9 19 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein class 4; PDBTitle: structure of the ompa-like domain of rmpm from neisseria2 meningitidis 8 c2kgwA_ 91.7 15 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: solution structure of the carboxy-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis 9 c3khnB_ 88.9 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:motb protein, putative; PDBTitle: crystal structure of putative motb like protein dvu_22282 from desulfovibrio vulgaris. 10 c2k1sA_ 88.2 18 PDB header:lipoprotein Chain: A: PDB Molecule:inner membrane lipoprotein yiad; PDBTitle: solution nmr structure of the folded c-terminal fragment of yiad from2 escherichia coli. northeast structural genomics consortium target3 er553. 11 c2l26A_ 87.9 16 PDB header:membrane protein Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922; PDBTitle: rv0899 from mycobacterium tuberculosis contains two separated domains 12 c3oonA_ 86.8 20 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein (tpn50); PDBTitle: the structure of an outer membrance protein from borrelia burgdorferi2 b31 13 c2h9aA_ 82.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:carbon monoxide dehydrogenase corrinoid/iron- PDBTitle: corrinoid iron-sulfur protein 14 c2h9aB_ 81.4 8 PDB header:oxidoreductase Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase, iron- PDBTitle: corrinoid iron-sulfur protein 15 d1p5dx1 75.9 17 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 16 d1c7qa_ 74.2 14 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 17 c3td4D_ 74.0 13 PDB header:membrane protein,peptide binding protein Chain: D: PDB Molecule:outer membrane protein omp38; PDBTitle: crystal structure of ompa-like domain from acinetobacter baumannii in2 complex with diaminopimelate 18 c3rhgA_ 71.2 18 PDB header:hydrolase Chain: A: PDB Molecule:putative phophotriesterase; PDBTitle: crystal structure of amidohydrolase pmi1525 (target efi-500319) from2 proteus mirabilis hi4320 19 c2rgyA_ 67.1 17 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of transcriptional regulator of laci family from2 burkhoderia phymatum 20 d3pmga1 66.8 16 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 21 c3m5uA_ not modelled 65.2 10 PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni 22 d1ad1a_ not modelled 63.4 18 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 23 c1zzgB_ not modelled 62.9 13 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of hypothetical protein tt0462 from thermus2 thermophilus hb8 24 d1f6ya_ not modelled 60.1 13 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Methyltetrahydrofolate-utiluzing methyltransferases 25 c3e3mA_ not modelled 57.8 14 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a laci family transcriptional2 regulator from silicibacter pomeroyi 26 c2q8nB_ not modelled 57.1 15 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of glucose-6-phosphate isomerase (ec2 5.3.1.9) (tm1385) from thermotoga maritima at 1.82 a3 resolution 27 c3c04A_ not modelled 56.5 16 PDB header:isomerase Chain: A: PDB Molecule:phosphomannomutase/phosphoglucomutase; PDBTitle: structure of the p368g mutant of pmm/pgm from p. aeruginosa 28 c3brqA_ not modelled 54.9 14 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator ascg; PDBTitle: crystal structure of the escherichia coli transcriptional repressor2 ascg 29 c3tr9A_ not modelled 54.6 17 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: structure of a dihydropteroate synthase (folp) in complex with pteroic2 acid from coxiella burnetii 30 d2nzug1 not modelled 54.5 16 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 31 c3ldtA_ not modelled 53.7 18 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein, ompa family protein; PDBTitle: crystal structure of an outer membrane protein(ompa)from2 legionella pneumophila 32 d2nvma1 not modelled 52.6 14 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 33 c2r6hC_ not modelled 51.4 30 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh:ubiquinone oxidoreductase, na translocating, f PDBTitle: crystal structure of the domain comprising the nad binding and the fad2 binding regions of the nadh:ubiquinone oxidoreductase, na3 translocating, f subunit from porphyromonas gingivalis 34 d2nlva1 not modelled 51.3 24 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 35 c3cs3A_ not modelled 50.8 15 PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from enterococcus faecalis 36 c2xmhB_ not modelled 50.3 19 PDB header:transferase Chain: B: PDB Molecule:ctp-inositol-1-phosphate cytidylyltransferase; PDBTitle: the x-ray structure of ctp:inositol-1-phosphate2 cytidylyltransferase from archaeoglobus fulgidus 37 c2zvyB_ not modelled 49.7 19 PDB header:membrane protein Chain: B: PDB Molecule:chemotaxis protein motb; PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form ii) 38 d2nwva1 not modelled 48.9 19 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 39 d1ru8a_ not modelled 48.7 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 40 c3d8uA_ not modelled 48.5 12 PDB header:transcription regulator Chain: A: PDB Molecule:purr transcriptional regulator; PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633 41 c2vefB_ not modelled 47.7 11 PDB header:transferase Chain: B: PDB Molecule:dihydropteroate synthase; PDBTitle: dihydropteroate synthase from streptococcus pneumoniae 42 d1xpja_ not modelled 47.6 20 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein VC0232 43 c3d7qB_ not modelled 47.5 14 PDB header:unknown function Chain: B: PDB Molecule:xisi protein-like; PDBTitle: crystal structure of a xisi-like protein (npun_ar114) from nostoc2 punctiforme pcc 73102 at 2.30 a resolution 44 c3mn1B_ not modelled 47.5 16 PDB header:hydrolase Chain: B: PDB Molecule:probable yrbi family phosphatase; PDBTitle: crystal structure of probable yrbi family phosphatase from pseudomonas2 syringae pv.phaseolica 1448a 45 d1vm8a_ not modelled 47.5 18 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 46 d2djia3 not modelled 45.6 13 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase PP module 47 c3h5oB_ not modelled 45.2 13 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator gntr; PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum 48 d1vkha_ not modelled 44.0 13 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Putative serine hydrolase Ydr428c 49 c2yqsA_ not modelled 43.5 15 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of uridine-diphospho-n-acetylglucosamine2 pyrophosphorylase from candida albicans, in the product-binding form 50 d1cqxa3 not modelled 42.2 17 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Flavohemoglobin, C-terminal domain 51 c3i3wB_ not modelled 41.7 17 PDB header:isomerase Chain: B: PDB Molecule:phosphoglucosamine mutase; PDBTitle: structure of a phosphoglucosamine mutase from francisella tularensis 52 d1ir6a_ not modelled 40.4 16 Fold:DHH phosphoesterases Superfamily:DHH phosphoesterases Family:Exonuclease RecJ 53 c1ir6A_ not modelled 40.4 16 PDB header:hydrolase Chain: A: PDB Molecule:exonuclease recj; PDBTitle: crystal structure of exonuclease recj bound to manganese 54 d2gzsa1 not modelled 38.7 12 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:IroE-like 55 d1jv1a_ not modelled 38.7 19 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 56 c3cyqM_ not modelled 38.5 19 PDB header:membrane protein Chain: M: PDB Molecule:chemotaxis protein motb; PDBTitle: the crystal structure of the complex of the c-terminal domain of2 helicobacter pylori motb (residues 125-256) with n-acetylmuramic acid 57 d1jqlb_ not modelled 35.6 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 58 d1eyea_ not modelled 35.2 13 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 59 c2vsnB_ not modelled 35.2 9 PDB header:transferase Chain: B: PDB Molecule:xcogt; PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation 60 c3muxB_ not modelled 34.7 17 PDB header:lyase Chain: B: PDB Molecule:putative 4-hydroxy-2-oxoglutarate aldolase; PDBTitle: the crystal structure of a putative 4-hydroxy-2-oxoglutarate aldolase2 from bacillus anthracis to 1.45a 61 c2x5sB_ not modelled 34.1 12 PDB header:transferase Chain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase; PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state. 62 c3m6yA_ not modelled 34.0 17 PDB header:lyase Chain: A: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase; PDBTitle: structure of 4-hydroxy-2-oxoglutarate aldolase from bacillus cereus at2 1.45 a resolution. 63 c3clkB_ not modelled 33.4 13 PDB header:transcription regulator Chain: B: PDB Molecule:transcription regulator; PDBTitle: crystal structure of a transcription regulator from lactobacillus2 plantarum 64 d2ji7a1 not modelled 33.0 16 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 65 c3qk7C_ not modelled 32.7 14 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulators; PDBTitle: crystal structure of putative transcriptional regulator from yersinia2 pestis biovar microtus str. 91001 66 c3mmzA_ not modelled 32.6 12 PDB header:hydrolase Chain: A: PDB Molecule:putative had family hydrolase; PDBTitle: crystal structure of putative had family hydrolase from streptomyces2 avermitilis ma-4680 67 c3q41B_ not modelled 31.7 7 PDB header:transport protein Chain: B: PDB Molecule:glutamate [nmda] receptor subunit zeta-1; PDBTitle: crystal structure of the glun1 n-terminal domain (ntd) 68 c2ecfA_ not modelled 31.1 18 PDB header:hydrolase Chain: A: PDB Molecule:dipeptidyl peptidase iv; PDBTitle: crystal structure of dipeptidyl aminopeptidase iv from2 stenotrophomonas maltophilia 69 d1gvha3 not modelled 31.1 17 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Flavohemoglobin, C-terminal domain 70 c3ff1B_ not modelled 31.0 12 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: structure of glucose 6-phosphate isomerase from staphylococcus aureus 71 d1lzla_ not modelled 30.8 16 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carboxylesterase 72 d1rz3a_ not modelled 30.8 22 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase 73 c3k32D_ not modelled 30.6 23 PDB header:transferase Chain: D: PDB Molecule:uncharacterized protein mj0690; PDBTitle: the crystal structure of predicted subunit of trna2 methyltransferase from methanocaldococcus jannaschii dsm 74 c3d6kB_ not modelled 30.6 14 PDB header:transferase Chain: B: PDB Molecule:putative aminotransferase; PDBTitle: the crystal structure of a putative aminotransferase from2 corynebacterium diphtheriae 75 c1t3tA_ not modelled 30.5 16 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase; PDBTitle: structure of formylglycinamide synthetase 76 c3en0A_ not modelled 30.2 16 PDB header:hydrolase Chain: A: PDB Molecule:cyanophycinase; PDBTitle: the structure of cyanophycinase 77 c2yciX_ not modelled 30.0 12 PDB header:transferase Chain: X: PDB Molecule:5-methyltetrahydrofolate corrinoid/iron sulfur protein PDBTitle: methyltransferase native 78 d3bofa1 not modelled 30.0 11 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Methyltetrahydrofolate-utiluzing methyltransferases 79 d1nkta4 not modelled 30.0 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 80 c2r8zC_ not modelled 29.9 9 PDB header:hydrolase Chain: C: PDB Molecule:3-deoxy-d-manno-octulosonate 8-phosphate phosphatase; PDBTitle: crystal structure of yrbi phosphatase from escherichia coli in complex2 with a phosphate and a calcium ion 81 c3gnnA_ not modelled 29.7 23 PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of nicotinate-nucleotide2 pyrophosphorylase from burkholderi pseudomallei 82 c3ed1E_ not modelled 29.6 22 PDB header:hydrolase receptor Chain: E: PDB Molecule:gibberellin receptor gid1; PDBTitle: crystal structure of rice gid1 complexed with ga3 83 d1tx2a_ not modelled 28.2 13 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 84 c1tx2A_ not modelled 28.2 13 PDB header:transferase Chain: A: PDB Molecule:dhps, dihydropteroate synthase; PDBTitle: dihydropteroate synthetase, with bound inhibitor manic, from bacillus2 anthracis 85 c3gv0A_ not modelled 27.6 6 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci family transcription regulator from2 agrobacterium tumefaciens 86 d1qopb_ not modelled 27.6 11 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 87 c2kpoA_ not modelled 27.3 15 PDB header:de novo protein Chain: A: PDB Molecule:rossmann 2x2 fold protein; PDBTitle: solution nmr structure of de novo designed rossmann 2x2 fold protein,2 northeast structural genomics consortium target or16 88 c3n07B_ not modelled 27.1 8 PDB header:hydrolase Chain: B: PDB Molecule:3-deoxy-d-manno-octulosonate 8-phosphate phosphatase; PDBTitle: structure of putative 3-deoxy-d-manno-octulosonate 8-phosphate2 phosphatase from vibrio cholerae 89 c3ljkA_ not modelled 27.0 26 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: glucose-6-phosphate isomerase from francisella tularensis. 90 c1x1qA_ not modelled 26.7 13 PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase beta chain; PDBTitle: crystal structure of tryptophan synthase beta chain from thermus2 thermophilus hb8 91 c2vp8A_ not modelled 26.3 15 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase 2; PDBTitle: structure of mycobacterium tuberculosis rv1207 92 d3bzka5 not modelled 26.1 25 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Tex RuvX-like domain-like 93 d1v77a_ not modelled 26.1 16 Fold:7-stranded beta/alpha barrel Superfamily:PHP domain-like Family:RNase P subunit p30 94 d1gzda_ not modelled 25.7 17 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 95 c3dbiA_ not modelled 25.3 13 PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from escherichia coli complexed with phosphate 96 c3azqA_ not modelled 25.2 23 PDB header:hydrolase Chain: A: PDB Molecule:aminopeptidase; PDBTitle: crystal structure of puromycin hydrolase s511a mutant complexed with2 pgg 97 c2cunA_ not modelled 25.1 11 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from pyrococcus2 horikoshii ot3 98 c1gvhA_ not modelled 25.1 22 PDB header:oxidoreductase Chain: A: PDB Molecule:flavohemoprotein; PDBTitle: the x-ray structure of ferric escherichia coli2 flavohemoglobin reveals an unespected geometry of the3 distal heme pocket 99 c3oc9A_ not modelled 24.8 22 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of putative udp-n-acetylglucosamine2 pyrophosphorylase from entamoeba histolytica 100 c3k4hA_ not modelled 24.8 12 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator laci from2 bacillus cereus subsp. cytotoxis nvh 391-98 101 c3hutA_ not modelled 24.0 14 PDB header:transport protein Chain: A: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from rhodospirillum rubrum 102 c3f0hA_ not modelled 23.8 12 PDB header:transferase Chain: A: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution 103 d1krha2 not modelled 23.0 8 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Aromatic dioxygenase reductase-like 104 d1iata_ not modelled 23.0 17 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 105 d1o2da_ not modelled 22.7 13 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 106 d2g6ta1 not modelled 22.6 26 Fold:CAC2185-like Superfamily:CAC2185-like Family:CAC2185-like 107 c2z9wA_ not modelled 22.5 11 PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal 108 c3hbmA_ not modelled 22.5 41 PDB header:hydrolase Chain: A: PDB Molecule:udp-sugar hydrolase; PDBTitle: crystal structure of pseg from campylobacter jejuni 109 c3pe3D_ not modelled 22.4 7 PDB header:transferase Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n- PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate 110 c2fzvC_ not modelled 22.4 17 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:putative arsenical resistance protein; PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri 111 d1ou0a_ not modelled 22.2 17 Fold:Flavodoxin-like Superfamily:Precorrin-8X methylmutase CbiC/CobH Family:Precorrin-8X methylmutase CbiC/CobH 112 c3sg0A_ not modelled 21.9 7 PDB header:signaling protein Chain: A: PDB Molecule:extracellular ligand-binding receptor; PDBTitle: the crystal structure of an extracellular ligand-binding receptor from2 rhodopseudomonas palustris haa2 113 d2ioja1 not modelled 21.7 29 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:DRTGG domain 114 d1jq5a_ not modelled 21.7 11 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 115 c3ez1A_ not modelled 21.6 13 PDB header:transferase Chain: A: PDB Molecule:aminotransferase mocr family; PDBTitle: crystal structure of putative aminotransferase (mocr family)2 (yp_604413.1) from deinococcus geothermalis dsm 11300 at 2.60 a3 resolution 116 d1jr3d2 not modelled 21.4 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 117 d1ybha1 not modelled 21.1 15 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 118 c1y88A_ not modelled 21.0 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af1548; PDBTitle: crystal structure of protein of unknown function af1548 119 d1miob_ not modelled 20.9 13 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 120 d1tvca2 not modelled 20.6 13 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Aromatic dioxygenase reductase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0