Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP76464
DateWed Jan 25 15:21:08 GMT 2012
Unique Job ID169b609148868c42

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3cu7A_
Top template information
PDB header:immune system
Chain: A: PDB Molecule:complement c5;
PDBTitle: human complement component 5
Confidence and coverage
Confidence:100.0% Coverage: 79%
1209 residues ( 79% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MDTQRFQSQFHWHLSFKFSGAIAACLSLSLVGTGLANADDSLPSSNYAPPAGGTFFLLAD
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   .........70.........80.........90.........100.........110.........120
Sequence  SSFSSSEEAKVRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQY
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Disorder  ????

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   .........130.........140.........150.........160.........170.........180
Sequence  LGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQ
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   .........190.........200.........210.........220.........230.........240
Sequence  FSPLKKYPLVKQFRYPLWQAKPFEPQQGVKLEGASSNFISPQPGNIYIPLGQQEPGLYLV
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   .........250.........260.........270.........280.........290.........300
Sequence  EAMVGGYRATTVVFVSDTVALSKVSGKELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGV
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   .........310.........320.........330.........340.........350.........360
Sequence  TDDSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRV
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   .........370.........380.........390.........400.........410.........420
Sequence  DVKVIGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVA
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   .........430.........440.........450.........460.........470.........480
Sequence  GGYELRLAYRNQVYSSSFRVANYIKPHFEIGLALAKKEFKTGEAVSGKLQLLYPDGEPVK
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   .........490.........500.........510.........520.........530.........540
Sequence  NARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDASGHVALNLPAADKPSRYLLTV
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   .........550.........560.........570.........580.........590.........600
Sequence  SASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWL
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   .........610.........620.........630.........640.........650.........660
Sequence  RLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTAHTGTV
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   .........670.........680.........690.........700.........710.........720
Sequence  DIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQY
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   .........730.........740.........750.........760.........770.........780
Sequence  EARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVE
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   .........790.........800.........810.........820.........830.........840
Sequence  LTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQA
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   .........850.........860.........870.........880.........890.........900
Sequence  LSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWR
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   .........910.........920.........930.........940.........950.........960
Sequence  ITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDKPAAGLFIFSQQDNEPVALVT
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   .........970.........980.........990.........1000.........1010.........1020
Sequence  KFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVE
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   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  QQKNVMLGGGDNALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPL
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   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  SLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYAD
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   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  WQASQAIGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAI
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   .........1210.........1220.........1230.........1240.........1250.........1260
Sequence  ARRGTKTEDFSEEDTRDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQY
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   .........1270.........1280.........1290.........1300.........1310.........1320
Sequence  AWDKAANSNQPLAHTVVLLNSGGDATQTAAILSGLTAEQSTIERALAMNWLAKYMATMPP
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   .........1330.........1340.........1350.........1360.........1370.........1380
Sequence  VVLPAPAGAWAKHKLTGGGEDWRWVGQGVPDILSFGDELSPQNVQVRWREPAKMAQQSNI
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   .........1390.........1400.........1410.........1420.........1430.........1440
Sequence  PVTVERQLYRLIPGEEEMSFILQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLP
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   .........1450.........1460.........1470.........1480.........1490.........1500
Sequence  PGADVERTTWGISVNKPNAAKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQ
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   .........1510.........1520.........1530....
Sequence  KGQFVLPPARYVRSYAPAQQSVAAGSEWTGMQVK
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3cu7 chain A

3D model

Region: 264 - 1521
Aligned: 1209
Modelled: 1248
Confidence: 100.0%
Identity: 14%
PDB header:immune system
Chain: A: PDB Molecule:complement c5;
PDBTitle: human complement component 5

Phyre2

PDB 2b39 chain B

3D model

Region: 339 - 1521
Aligned: 1125
Modelled: 1162
Confidence: 100.0%
Identity: 14%
PDB header:immune system
Chain: B: PDB Molecule:c3;
PDBTitle: structure of mammalian c3 with an intact thioester at 3a resolution

Phyre2

PDB 2pn5 chain A

3D model

Region: 264 - 1521
Aligned: 1169
Modelled: 1220
Confidence: 100.0%
Identity: 13%
PDB header:immune system
Chain: A: PDB Molecule:thioester-containing protein i;
PDBTitle: crystal structure of tep1r

Phyre2

PDB 3pvm chain B

3D model

Region: 345 - 1140
Aligned: 737
Modelled: 759
Confidence: 100.0%
Identity: 16%
PDB header:immune system
Chain: B: PDB Molecule:cobra venom factor;
PDBTitle: structure of complement c5 in complex with cvf

Phyre2

PDB 2a73 chain B

3D model

Region: 849 - 1521
Aligned: 645
Modelled: 662
Confidence: 100.0%
Identity: 13%
PDB header:immune system
Chain: B: PDB Molecule:complement c3;
PDBTitle: human complement component c3

Phyre2

PDB 3g6j chain B

3D model

Region: 864 - 1521
Aligned: 635
Modelled: 645
Confidence: 100.0%
Identity: 13%
PDB header:immune system
Chain: B: PDB Molecule:complement c3 alpha chain;
PDBTitle: c3b in complex with a c3b specific fab

Phyre2

PDB 3hrz chain A

3D model

Region: 262 - 829
Aligned: 527
Modelled: 567
Confidence: 100.0%
Identity: 18%
PDB header:immune system
Chain: A: PDB Molecule:cobra venom factor;
PDBTitle: cobra venom factor (cvf) in complex with human factor b

Phyre2

PDB 2qki chain A

3D model

Region: 264 - 829
Aligned: 535
Modelled: 566
Confidence: 100.0%
Identity: 15%
PDB header:immune system/hydrolase inhibitor
Chain: A: PDB Molecule:complement c3;
PDBTitle: human c3c in complex with the inhibitor compstatin

Phyre2

PDB 1hzf chain A

3D model

Region: 1057 - 1318
Aligned: 251
Modelled: 262
Confidence: 100.0%
Identity: 18%
Fold: alpha/alpha toroid
Superfamily: Terpenoid cyclases/Protein prenyltransferases
Family: Complement components

Phyre2

PDB 1hzf chain A

3D model

Region: 1057 - 1318
Aligned: 251
Modelled: 262
Confidence: 100.0%
Identity: 18%
PDB header:immune system
Chain: A: PDB Molecule:complement factor c4a;
PDBTitle: c4adg fragment of human complement factor c4a

Phyre2

PDB 1c3d chain A

3D model

Region: 1056 - 1319
Aligned: 249
Modelled: 264
Confidence: 100.0%
Identity: 14%
Fold: alpha/alpha toroid
Superfamily: Terpenoid cyclases/Protein prenyltransferases
Family: Complement components

Phyre2

PDB 3hs0 chain B

3D model

Region: 864 - 1051
Aligned: 188
Modelled: 188
Confidence: 100.0%
Identity: 15%
PDB header:immune system
Chain: B: PDB Molecule:cobra venom factor;
PDBTitle: cobra venom factor (cvf) in complex with human factor b

Phyre2

PDB 2a74 chain B

3D model

Region: 853 - 1015
Aligned: 163
Modelled: 163
Confidence: 99.9%
Identity: 15%
PDB header:immune system
Chain: B: PDB Molecule:complement component c3c;
PDBTitle: human complement component c3c

Phyre2

PDB 1qqf chain A

3D model

Region: 1070 - 1318
Aligned: 234
Modelled: 249
Confidence: 99.9%
Identity: 12%
Fold: alpha/alpha toroid
Superfamily: Terpenoid cyclases/Protein prenyltransferases
Family: Complement components

Phyre2

PDB 2p9r chain A

3D model

Region: 342 - 446
Aligned: 101
Modelled: 105
Confidence: 99.8%
Identity: 19%
PDB header:signaling protein
Chain: A: PDB Molecule:alpha-2-macroglobulin;
PDBTitle: human alpha2-macroglogulin is composed of multiple domains,2 as predicted by homology with complement component c3

Phyre2

PDB 3es6 chain B domain 1

3D model

Region: 921 - 1025
Aligned: 105
Modelled: 105
Confidence: 98.9%
Identity: 11%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: E set domains
Family: SVA-like

Phyre2

PDB 1o79 chain A

3D model

Region: 1080 - 1318
Aligned: 197
Modelled: 201
Confidence: 98.5%
Identity: 12%
PDB header:isomerase
Chain: A: PDB Molecule:squalene--hopene cyclase;
PDBTitle: structures of human oxidosqualene cyclase inhibitors bound2 to a homolgous enzyme

Phyre2

PDB 3hrz chain C

3D model

Region: 1324 - 1521
Aligned: 188
Modelled: 198
Confidence: 98.4%
Identity: 6%
PDB header:immune system
Chain: C: PDB Molecule:cobra venom factor;
PDBTitle: cobra venom factor (cvf) in complex with human factor b

Phyre2

PDB 1w6k chain A

3D model

Region: 1067 - 1324
Aligned: 224
Modelled: 227
Confidence: 98.1%
Identity: 11%
PDB header:isomerase
Chain: A: PDB Molecule:lanosterol synthase;
PDBTitle: structure of human osc in complex with lanosterol

Phyre2

PDB 1edy chain A

3D model

Region: 1398 - 1521
Aligned: 115
Modelled: 122
Confidence: 98.0%
Identity: 12%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Alpha-macroglobulin receptor domain
Family: Alpha-macroglobulin receptor domain

Phyre2

PDB 3ott chain B

3D model

Region: 210 - 244
Aligned: 35
Modelled: 35
Confidence: 76.8%
Identity: 17%
PDB header:transcription
Chain: B: PDB Molecule:two-component system sensor histidine kinase;
PDBTitle: crystal structure of the extracellular domain of the putative one2 component system bt4673 from b. thetaiotaomicron

Phyre2
1

c3cu7A_
2

c2b39B_
3

c2pn5A_
4

c3pvmB_
5

c2a73B_
6

c3g6jB_
7

c3hrzA_
8

c2qkiA_
9

d1hzfa_
10

c1hzfA_
11

d1c3da_
12

c3hs0B_
13

c2a74B_
14

d1qqfa_
15

c2p9rA_
16

d3es6b1
17

c1o79A_
18

c3hrzC_
19

c1w6kA_
20

d1edya_
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c3ottB_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3cu7A_



100.0 14 PDB header:immune system
Chain: A: PDB Molecule:complement c5;
PDBTitle: human complement component 5
2c2b39B_



100.0 14 PDB header:immune system
Chain: B: PDB Molecule:c3;
PDBTitle: structure of mammalian c3 with an intact thioester at 3a resolution
3c2pn5A_



100.0 13 PDB header:immune system
Chain: A: PDB Molecule:thioester-containing protein i;
PDBTitle: crystal structure of tep1r
4c3pvmB_



100.0 16 PDB header:immune system
Chain: B: PDB Molecule:cobra venom factor;
PDBTitle: structure of complement c5 in complex with cvf
5c2a73B_



100.0 13 PDB header:immune system
Chain: B: PDB Molecule:complement c3;
PDBTitle: human complement component c3
6c3g6jB_



100.0 13 PDB header:immune system
Chain: B: PDB Molecule:complement c3 alpha chain;
PDBTitle: c3b in complex with a c3b specific fab
7c3hrzA_



100.0 18 PDB header:immune system
Chain: A: PDB Molecule:cobra venom factor;
PDBTitle: cobra venom factor (cvf) in complex with human factor b
8c2qkiA_



100.0 15 PDB header:immune system/hydrolase inhibitor
Chain: A: PDB Molecule:complement c3;
PDBTitle: human c3c in complex with the inhibitor compstatin
9d1hzfa_



100.0 18 Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Complement components
10c1hzfA_



100.0 18 PDB header:immune system
Chain: A: PDB Molecule:complement factor c4a;
PDBTitle: c4adg fragment of human complement factor c4a
11d1c3da_



100.0 14 Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Complement components
12c3hs0B_



100.0 15 PDB header:immune system
Chain: B: PDB Molecule:cobra venom factor;
PDBTitle: cobra venom factor (cvf) in complex with human factor b
13c2a74B_



99.9 15 PDB header:immune system
Chain: B: PDB Molecule:complement component c3c;
PDBTitle: human complement component c3c
14d1qqfa_



99.9 12 Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Complement components
15c2p9rA_



99.8 19 PDB header:signaling protein
Chain: A: PDB Molecule:alpha-2-macroglobulin;
PDBTitle: human alpha2-macroglogulin is composed of multiple domains,2 as predicted by homology with complement component c3
16d3es6b1



98.9 11 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:SVA-like
17c1o79A_



98.5 12 PDB header:isomerase
Chain: A: PDB Molecule:squalene--hopene cyclase;
PDBTitle: structures of human oxidosqualene cyclase inhibitors bound2 to a homolgous enzyme
18c3hrzC_



98.4 6 PDB header:immune system
Chain: C: PDB Molecule:cobra venom factor;
PDBTitle: cobra venom factor (cvf) in complex with human factor b
19c1w6kA_



98.1 11 PDB header:isomerase
Chain: A: PDB Molecule:lanosterol synthase;
PDBTitle: structure of human osc in complex with lanosterol
20d1edya_



98.0 12 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Alpha-macroglobulin receptor domain
Family:Alpha-macroglobulin receptor domain
21d2sqca1



not modelled 97.9 13 Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Terpene synthases
22c2qkiC_



not modelled 97.9 8 PDB header:immune system/hydrolase inhibitor
Chain: C: PDB Molecule:complement c3;
PDBTitle: human c3c in complex with the inhibitor compstatin
23d1bv8a_



not modelled 97.9 11 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Alpha-macroglobulin receptor domain
Family:Alpha-macroglobulin receptor domain
24d1ayoa_



not modelled 97.8 13 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Alpha-macroglobulin receptor domain
Family:Alpha-macroglobulin receptor domain
25d2sqca2



not modelled 97.7 20 Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Terpene synthases
26d1w6ka1



not modelled 97.6 10 Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Terpene synthases
27c1cwvA_



not modelled 97.2 14 PDB header:structural protein
Chain: A: PDB Molecule:invasin;
PDBTitle: crystal structure of invasin: a bacterial integrin-binding protein
28d1w6ka2



not modelled 96.6 15 Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Terpene synthases
29c1wlhA_



not modelled 96.3 11 PDB header:structural protein
Chain: A: PDB Molecule:gelation factor;
PDBTitle: molecular structure of the rod domain of dictyostelium2 filamin
30c2pz4A_



not modelled 96.2 14 PDB header:cell adhesion
Chain: A: PDB Molecule:protein gbs052;
PDBTitle: crystal structure of spab (gbs52), the minor pilin in gram-positive2 pathogen streptococcus agalactiae
31c3e8vA_



not modelled 96.0 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:possible transglutaminase-family protein;
PDBTitle: crystal structure of a possible transglutaminase-family2 protein proteolytic fragment from bacteroides fragilis
32c3qvaB_



not modelled 95.9 15 PDB header:hydrolase
Chain: B: PDB Molecule:transthyretin-like protein;
PDBTitle: structure of klebsiella pneumoniae 5-hydroxyisourate hydrolase
33c2k7pA_



not modelled 95.7 15 PDB header:structural protein
Chain: A: PDB Molecule:filamin-a;
PDBTitle: filamin a ig-like domains 16-17
34d1r76a_



not modelled 95.7 14 Fold:alpha/alpha toroid
Superfamily:Family 10 polysaccharide lyase
Family:Family 10 polysaccharide lyase
35d1gxma_



not modelled 95.5 9 Fold:alpha/alpha toroid
Superfamily:Family 10 polysaccharide lyase
Family:Family 10 polysaccharide lyase
36c2zxcA_



not modelled 95.3 18 PDB header:hydrolase
Chain: A: PDB Molecule:neutral ceramidase;
PDBTitle: seramidase complexed with c2
37d2dj4a1



not modelled 95.0 22 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
38d2dmba1



not modelled 94.8 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
39d1vjja1



not modelled 94.7 16 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Transglutaminase N-terminal domain
40d2bp3a1



not modelled 94.6 19 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
41d2d7ma1



not modelled 94.6 22 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
42c2gpzC_



not modelled 94.6 28 PDB header:hydrolase
Chain: C: PDB Molecule:transthyretin-like protein;
PDBTitle: transthyretin-like protein from salmonella dublin
43d1qfha1



not modelled 94.5 11 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
44d1kgia_



not modelled 94.5 21 Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
45d1ttaa_



not modelled 94.2 23 Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
46d2dica1



not modelled 94.2 19 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
47d2h6fb1



not modelled 94.1 14 Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Protein prenyltransferases
48c2h0eA_



not modelled 94.0 13 PDB header:hydrolase
Chain: A: PDB Molecule:transthyretin-like protein pucm;
PDBTitle: crystal structure of pucm in the absence of substrate
49d1v05a_



not modelled 94.0 16 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
50d1f86a_



not modelled 93.9 23 Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
51d1qfha2



not modelled 93.7 10 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
52c3kptA_



not modelled 93.7 17 PDB header:cell adhesion
Chain: A: PDB Molecule:collagen adhesion protein;
PDBTitle: crystal structure of bcpa, the major pilin subunit of2 bacillus cereus
53d1w8oa1



not modelled 93.6 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
54c3e37B_



not modelled 93.6 14 PDB header:transferase
Chain: B: PDB Molecule:protein farnesyltransferase subunit beta;
PDBTitle: protein farnesyltransferase complexed with bisubstrate2 ethylenediamine scaffold inhibitor 5
55d3dssb1



not modelled 93.6 5 Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Protein prenyltransferases
56d2e9ia1



not modelled 93.6 21 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
57c1l9mB_



not modelled 93.4 13 PDB header:transferase
Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3;
PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation
58d2di8a1



not modelled 93.3 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
59c3irpX_



not modelled 93.2 18 PDB header:cell adhesion
Chain: X: PDB Molecule:uro-adherence factor a;
PDBTitle: crystal structure of functional region of uafa from staphylococcus2 saprophyticus at 1.50 angstrom resolution
60c3osvC_



not modelled 93.2 12 PDB header:structural protein
Chain: C: PDB Molecule:flagellar basal-body rod modification protein flgd;
PDBTitle: the crytsal structure of flgd from p. aeruginosa
61c2ee6A_



not modelled 93.2 14 PDB header:structural protein
Chain: A: PDB Molecule:filamin-b;
PDBTitle: solution structure of the 21th filamin domain from human2 filamin-b
62c3iswA_



not modelled 93.1 16 PDB header:structural protein
Chain: A: PDB Molecule:filamin-a;
PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr
63d1oo2a_



not modelled 92.9 26 Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
64c2ds4A_



not modelled 92.8 14 PDB header:protein binding
Chain: A: PDB Molecule:tripartite motif protein 45;
PDBTitle: solution structure of the filamin domain from human2 tripartite motif protein 45
65c2h1xB_



not modelled 92.7 26 PDB header:hydrolase
Chain: B: PDB Molecule:5-hydroxyisourate hydrolase (formerly known as
PDBTitle: crystal structure of 5-hydroxyisourate hydrolase (formerly2 known as trp, transthyretin related protein)
66d1h8la1



not modelled 92.7 7 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
67c3isyA_



not modelled 92.7 18 PDB header:protein binding
Chain: A: PDB Molecule:intracellular proteinase inhibitor;
PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution
68c3cnkB_



not modelled 92.3 17 PDB header:structural protein
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the dimerization domain of human2 filamin a
69d2diaa1



not modelled 92.2 19 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
70c2fauA_



not modelled 92.2 19 PDB header:protein transport
Chain: A: PDB Molecule:vacuolar protein sorting 26;
PDBTitle: crystal structure of human vps26
71c3c12A_



not modelled 92.0 17 PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly
72c2e9jA_



not modelled 92.0 19 PDB header:structural protein
Chain: A: PDB Molecule:filamin-b;
PDBTitle: solution structure of the 14th filamin domain from human2 filamin-b
73c2brqB_



not modelled 91.6 14 PDB header:structural protein
Chain: B: PDB Molecule:filamin a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide
74d2d7pa1



not modelled 91.4 11 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
75d2d7na1



not modelled 91.3 14 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
76d2diba1



not modelled 91.0 21 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
77d1wlha1



not modelled 90.7 12 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
78d1cwva1



not modelled 90.5 11 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
79c1tnuL_



not modelled 90.4 5 PDB header:transferase
Chain: L: PDB Molecule:geranylgeranyl transferase type i beta subunit;
PDBTitle: rat protein geranylgeranyltransferase type-i complexed with2 a ggpp analog and a gcincckvl peptide derived from rhob
80d1n4qb_



not modelled 90.3 5 Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Protein prenyltransferases
81d2dmca1



not modelled 89.7 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
82d2d7oa1



not modelled 89.0 14 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
83c2ww8A_



not modelled 88.9 11 PDB header:cell adhesion
Chain: A: PDB Molecule:cell wall surface anchor family protein;
PDBTitle: structure of the pilus adhesin (rrga) from streptococcus2 pneumoniae
84c2pmvB_



not modelled 88.8 14 PDB header:transport protein
Chain: B: PDB Molecule:gastric intrinsic factor;
PDBTitle: crystal structure of human intrinsic factor- cobalamin complex at 2.62 a resolution
85d3pccm_



not modelled 88.8 17 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
86d2w0pa1



not modelled 88.8 14 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
87c3n9tA_



not modelled 88.3 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:pnpc;
PDBTitle: cryatal structure of hydroxyquinol 1,2-dioxygenase from pseudomonas2 putida dll-e4
88c3draB_



not modelled 88.3 7 PDB header:transferase
Chain: B: PDB Molecule:geranylgeranyltransferase type i beta subunit;
PDBTitle: candida albicans protein geranylgeranyltransferase-i2 complexed with ggpp
89c3rghA_



not modelled 88.0 17 PDB header:cell adhesion
Chain: A: PDB Molecule:filamin-a;
PDBTitle: structure of filamin a immunoglobulin-like repeat 10 from homo sapiens
90d2burb1



not modelled 87.9 20 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
91d1f00i1



not modelled 87.9 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
92c2j3sB_



not modelled 87.7 15 PDB header:structural protein
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the human filamin a ig domains 19 to2 21
93d1ex0a1



not modelled 87.6 10 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Transglutaminase N-terminal domain
94c2kl6A_



not modelled 87.6 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of the cardb domain of pf1109 from2 pyrococcus furiosus. northeast structural genomics3 consortium target pfr193a
95c1qfhB_



not modelled 87.6 12 PDB header:actin binding protein
Chain: B: PDB Molecule:protein (gelation factor);
PDBTitle: dimerization of gelation factor from dictyostelium2 discoideum: crystal structure of rod domains 5 and 6
96c2r5oA_



not modelled 87.3 12 PDB header:transport protein
Chain: A: PDB Molecule:putative atp binding component of abc-
PDBTitle: crystal structure of the c-terminal domain of wzt
97c2brqA_



not modelled 86.9 16 PDB header:structural protein
Chain: A: PDB Molecule:filamin a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide
98c2w0pB_



not modelled 86.9 16 PDB header:cell adhesion
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the migfilin peptide
99c3iswB_



not modelled 86.9 16 PDB header:structural protein
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr
100d2q3za1



not modelled 86.8 21 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Transglutaminase N-terminal domain
101d2nqca1



not modelled 86.2 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
102c2nqcA_



not modelled 86.2 17 PDB header:immune system
Chain: A: PDB Molecule:filamin-c;
PDBTitle: crystal structure of ig-like domain 23 from human filamin c
103c2jf1A_



not modelled 85.9 14 PDB header:cell adhesion
Chain: A: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta2 cytoplasmic tail peptide
104c3q7aB_



not modelled 85.3 14 PDB header:transferase/transferase inhibitor
Chain: B: PDB Molecule:farnesyltransferase beta subunit;
PDBTitle: cryptococcus neoformans protein farnesyltransferase in complex with2 fpp and l-778,123
105c1ksrA_



not modelled 84.5 12 PDB header:actin binding protein
Chain: A: PDB Molecule:gelation factor;
PDBTitle: the repeating segments of the f-actin cross-linking2 gelation factor (abp-120) have an immunoglobulin fold, nmr,3 20 structures
106c1uwyA_



not modelled 84.5 17 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m
107c2xsuA_



not modelled 84.4 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2 dioxygenase;
PDBTitle: crystal structure of the a72g mutant of acinetobacter2 radioresistens catechol 1,2 dioxygenase
108d1cwva2



not modelled 84.3 21 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
109c3mn8A_



not modelled 84.2 12 PDB header:hydrolase
Chain: A: PDB Molecule:lp15968p;
PDBTitle: structure of drosophila melanogaster carboxypeptidase d isoform 1b2 short
110d2bura1



not modelled 84.2 22 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
111d1uwya1



not modelled 84.0 18 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
112c2k7qA_



not modelled 83.2 15 PDB header:structural protein
Chain: A: PDB Molecule:filamin-a;
PDBTitle: filamin a ig-like domains 18-19
113d3pcca_



not modelled 81.7 20 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
114c2v3nA_



not modelled 80.9 11 PDB header:transport protein
Chain: A: PDB Molecule:transcobalamin-2;
PDBTitle: crystallographic analysis of upper axial ligand2 substitutions in cobalamin bound to transcobalamin
115c1h8lA_



not modelled 79.8 13 PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa
116c2x5pA_



not modelled 78.9 11 PDB header:protein binding
Chain: A: PDB Molecule:fibronectin binding protein;
PDBTitle: crystal structure of the streptococcus pyogenes fibronectin binding2 protein fbab-b
117c2di7A_



not modelled 78.0 9 PDB header:structural protein
Chain: A: PDB Molecule:bk158_1;
PDBTitle: solution structure of the filamin domain from human bk158_12 protein
118c3ottB_



76.8 17 PDB header:transcription
Chain: B: PDB Molecule:two-component system sensor histidine kinase;
PDBTitle: crystal structure of the extracellular domain of the putative one2 component system bt4673 from b. thetaiotaomicron
119c1ayrA_



not modelled 76.6 16 PDB header:sensory transduction
Chain: A: PDB Molecule:arrestin;
PDBTitle: arrestin from bovine rod outer segments
120d1g0da1



not modelled 76.1 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Transglutaminase N-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0