Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	P	T	S	H	E	N	A	L	Q	Q	R	C	Q	Q	I	V	T	S	P	V	L	S	P	E	Q	K	R	H	F	L	A	L	E	A	E	N	N	L	P	Y	P	Q	L	P	A	E	A	R	R	A	L	D	E	G	V	I	C	D	M
Secondary structure
SS confidence
Disorder		?	?	?	?	?																																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	E	G	H	A	P	Y	K	P	R	Y	V	L	P	D	Y	A	R	F	L	A	N	G	S	E	W	L	E	L	E	G	A	K	D	L	D	D	A	L	S	L	L	T	I	L	Y	H	H	V	P	S	V	T	S	M	P	V	Y	L	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	L	D	A	L	L	Q	P	Y	V	R	I	L	T	Q	D	E	I	D	V	R	I	K	R	F	W	R	Y	L	D	R	T	L	P	D	A	F	M	H	A	N	I	G	P	S	D	S	P	I	T	R	A	I	L	R	A	D	A	E	L
Secondary structure
SS confidence
Disorder																																																												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		K	Q	V	S	P	N	L	T	F	I	Y	D	P	E	I	T	P	D	D	L	L	L	E	V	A	K	N	I	C	E	C	S	K	P	H	I	A	N	G	P	V	H	D	K	I	F	T	K	G	G	Y	G	I	V	S	C	Y	N	S	L
Secondary structure
SS confidence
Disorder		?	?				?							?																														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		P	L	A	G	G	G	S	T	L	V	R	L	N	L	K	A	I	A	E	R	S	E	S	L	D	D	F	F	T	R	T	L	P	H	Y	C	Q	Q	Q	I	A	I	I	D	A	R	C	E	F	L	Y	Q	Q	S	H	F	F	E	N	S
Secondary structure
SS confidence
Disorder			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		F	L	V	K	E	G	L	I	N	P	E	R	F	V	P	M	F	G	M	Y	G	L	A	E	A	V	N	L	L	C	E	K	E	G	I	A	A	R	Y	G	K	E	A	A	A	N	E	V	G	Y	R	I	S	A	Q	L	A	E	F	V
Secondary structure
SS confidence
Disorder					?							?																							?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		A	N	T	P	V	K	Y	G	W	Q	K	R	A	M	L	H	A	Q	S	G	I	S	S	D	I	G	T	T	P	G	A	R	L	P	Y	G	D	E	P	D	P	I	T	H	L	Q	T	V	A	P	H	H	A	Y	Y	Y	S	G	I	S
Secondary structure
SS confidence
Disorder									?														?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		D	I	L	T	L	D	E	T	I	K	R	N	P	Q	A	L	V	Q	L	C	L	G	A	F	K	A	G	M	R	E	F	T	A	N	V	S	G	N	D	L	V	R	V	T	G	Y	M	V	R	L	S	D	L	E	K	Y	R	A	E	G
Secondary structure
SS confidence
Disorder																																																								?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
Sequence		S	R	T	N	T	T	W	L	G	E	E	A	A	R	N	T	R	I	L	E	R	Q	P	R	V	I	S	H	E	Q	Q	M	R	F	S	Q
Secondary structure
SS confidence
Disorder									?							?	?	?	?					?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1r9d chain A Region: 2 - 512 Aligned: 467 Modelled: 485 Confidence: 100.0% Identity: 17% Fold: PFL-like glycyl radical enzymes Superfamily: PFL-like glycyl radical enzymes Family: PFL-like Phyre2 PDB 2y8n chain C Region: 4 - 513 Aligned: 466 Modelled: 484 Confidence: 100.0% Identity: 16% PDB header:lyase Chain: C: PDB Molecule:4-hydroxyphenylacetate decarboxylase large subunit; PDBTitle: crystal structure of glycyl radical enzyme Phyre2 PDB 2f3o chain B Region: 2 - 511 Aligned: 467 Modelled: 484 Confidence: 100.0% Identity: 17% PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus Phyre2 PDB 1h16 chain A Region: 27 - 512 Aligned: 435 Modelled: 450 Confidence: 100.0% Identity: 18% Fold: PFL-like glycyl radical enzymes Superfamily: PFL-like glycyl radical enzymes Family: PFL-like Phyre2 PDB 1hk8 chain A Region: 20 - 508 Aligned: 457 Modelled: 464 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp Phyre2 PDB 1hk8 chain A Region: 20 - 508 Aligned: 457 Modelled: 473 Confidence: 100.0% Identity: 18% Fold: PFL-like glycyl radical enzymes Superfamily: PFL-like glycyl radical enzymes Family: Class III anaerobic ribonucleotide reductase NRDD subunit Phyre2 PDB 1qhm chain A Region: 24 - 377 Aligned: 311 Modelled: 318 Confidence: 100.0% Identity: 16% Fold: PFL-like glycyl radical enzymes Superfamily: PFL-like glycyl radical enzymes Family: PFL-like Phyre2 PDB 2wgh chain A Region: 196 - 448 Aligned: 232 Modelled: 253 Confidence: 97.9% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large PDBTitle: human ribonucleotide reductase r1 subunit (rrm1) in complex2 with datp and mg. Phyre2 PDB 2cvu chain A Region: 196 - 455 Aligned: 242 Modelled: 260 Confidence: 97.8% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large chain PDBTitle: structures of yeast ribonucleotide reductase i Phyre2 PDB 3hnf chain A Region: 199 - 360 Aligned: 143 Modelled: 162 Confidence: 97.2% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large subunit; PDBTitle: crystal structure of human ribonucleotide reductase 1 bound to the2 effectors ttp and datp Phyre2 PDB 1xje chain A Region: 199 - 360 Aligned: 143 Modelled: 162 Confidence: 96.9% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase, b12-dependent; PDBTitle: structural mechanism of allosteric substrate specificity in a2 ribonucleotide reductase: dttp-gdp complex Phyre2 PDB 3r1r chain B Region: 199 - 360 Aligned: 138 Modelled: 162 Confidence: 96.0% Identity: 14% PDB header:complex (oxidoreductase/peptide) Chain: B: PDB Molecule:ribonucleotide reductase r1 protein; PDBTitle: ribonucleotide reductase r1 protein with amppnp occupying2 the activity site from escherichia coli Phyre2 PDB 1pem chain A Region: 199 - 360 Aligned: 139 Modelled: 162 Confidence: 95.5% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 2 alpha PDBTitle: ribonucleotide reductase protein r1e from salmonella2 typhimurium Phyre2 PDB 1peq chain A domain 2 Region: 199 - 360 Aligned: 138 Modelled: 162 Confidence: 95.3% Identity: 14% Fold: PFL-like glycyl radical enzymes Superfamily: PFL-like glycyl radical enzymes Family: R1 subunit of ribonucleotide reductase, C-terminal domain Phyre2 PDB 1rlr chain A domain 2 Region: 199 - 360 Aligned: 143 Modelled: 162 Confidence: 94.0% Identity: 10% Fold: PFL-like glycyl radical enzymes Superfamily: PFL-like glycyl radical enzymes Family: R1 subunit of ribonucleotide reductase, C-terminal domain Phyre2 PDB 1l1l chain A Region: 183 - 329 Aligned: 127 Modelled: 147 Confidence: 72.6% Identity: 14% Fold: PFL-like glycyl radical enzymes Superfamily: PFL-like glycyl radical enzymes Family: B12-dependent (class II) ribonucleotide reductase Phyre2 PDB 3a9r chain A Region: 253 - 383 Aligned: 131 Modelled: 131 Confidence: 41.5% Identity: 17% PDB header:isomerase Chain: A: PDB Molecule:d-arabinose isomerase; PDBTitle: x-ray structures of bacillus pallidus d-arabinose2 isomerasecomplex with (4r)-2-methylpentane-2,4-diol Phyre2 PDB 2vg2 chain C Region: 430 - 459 Aligned: 30 Modelled: 30 Confidence: 39.1% Identity: 13% PDB header:transferase Chain: C: PDB Molecule:undecaprenyl pyrophosphate synthetase; PDBTitle: rv2361 with ipp Phyre2 PDB 1ueh chain A Region: 430 - 511 Aligned: 76 Modelled: 82 Confidence: 39.0% Identity: 16% Fold: Undecaprenyl diphosphate synthase Superfamily: Undecaprenyl diphosphate synthase Family: Undecaprenyl diphosphate synthase Phyre2 PDB 3ugs chain B Region: 425 - 513 Aligned: 85 Modelled: 89 Confidence: 36.6% Identity: 8% PDB header:transferase Chain: B: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of a probable undecaprenyl diphosphate synthase2 (upps) from campylobacter jejuni Phyre2 1 d1r9da_ 2 c2y8nC_ 3 c2f3oB_ 4 d1h16a_ 5 c1hk8A_ 6 d1hk8a_ 7 d1qhma_ 8 c2wghA_ 9 c2cvuA_ 10 c3hnfA_ 11 c1xjeA_ 12 c3r1rB_ 13 c1pemA_ 14 d1peqa2 15 d1rlra2 16 d1l1la_ 17 c3a9rA_ 18 c2vg2C_ 19 d1ueha_ 20 c3ugsB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1r9da_ 100.0 17 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 2 c2y8nC_ 100.0 16 PDB header:lyase Chain: C: PDB Molecule:4-hydroxyphenylacetate decarboxylase large subunit; PDBTitle: crystal structure of glycyl radical enzyme 3 c2f3oB_ 100.0 17 PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus 4 d1h16a_ 100.0 18 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 5 c1hk8A_ 100.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 6 d1hk8a_ 100.0 18 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 7 d1qhma_ 100.0 16 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 8 c2wghA_ 97.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large PDBTitle: human ribonucleotide reductase r1 subunit (rrm1) in complex2 with datp and mg. 9 c2cvuA_ 97.8 18 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large chain PDBTitle: structures of yeast ribonucleotide reductase i 10 c3hnfA_ 97.2 20 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large subunit; PDBTitle: crystal structure of human ribonucleotide reductase 1 bound to the2 effectors ttp and datp 11 c1xjeA_ 96.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase, b12-dependent; PDBTitle: structural mechanism of allosteric substrate specificity in a2 ribonucleotide reductase: dttp-gdp complex 12 c3r1rB_ 96.0 14 PDB header:complex (oxidoreductase/peptide) Chain: B: PDB Molecule:ribonucleotide reductase r1 protein; PDBTitle: ribonucleotide reductase r1 protein with amppnp occupying2 the activity site from escherichia coli 13 c1pemA_ 95.5 14 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 2 alpha PDBTitle: ribonucleotide reductase protein r1e from salmonella2 typhimurium 14 d1peqa2 95.3 14 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:R1 subunit of ribonucleotide reductase, C-terminal domain 15 d1rlra2 94.0 10 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:R1 subunit of ribonucleotide reductase, C-terminal domain 16 d1l1la_ 72.6 14 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:B12-dependent (class II) ribonucleotide reductase 17 c3a9rA_ 41.5 17 PDB header:isomerase Chain: A: PDB Molecule:d-arabinose isomerase; PDBTitle: x-ray structures of bacillus pallidus d-arabinose2 isomerasecomplex with (4r)-2-methylpentane-2,4-diol 18 c2vg2C_ 39.1 13 PDB header:transferase Chain: C: PDB Molecule:undecaprenyl pyrophosphate synthetase; PDBTitle: rv2361 with ipp 19 d1ueha_ 39.0 16 Fold:Undecaprenyl diphosphate synthase Superfamily:Undecaprenyl diphosphate synthase Family:Undecaprenyl diphosphate synthase 20 c3ugsB_ 36.6 8 PDB header:transferase Chain: B: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of a probable undecaprenyl diphosphate synthase2 (upps) from campylobacter jejuni 21 d1vioa2 not modelled 26.2 21 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 22 c1jp3A_ not modelled 25.3 16 PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: structure of e.coli undecaprenyl pyrophosphate synthase 23 d1j6wa_ not modelled 24.6 11 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:Autoinducer-2 production protein LuxS 24 c3vjjA_ not modelled 23.0 24 PDB header:viral protein Chain: A: PDB Molecule:p9-1; PDBTitle: crystal structure analysis of the p9-1 25 c3gxxB_ not modelled 22.5 13 PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt6; PDBTitle: structure of the sh2 domain of the candida glabrata2 transcription elongation factor spt6, crystal form b 26 c2pd0D_ not modelled 22.3 13 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein; PDBTitle: protein cgd2_2020 from cryptosporidium parvum 27 d2cb5a_ not modelled 22.1 14 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Papain-like 28 c3gr1A_ not modelled 21.6 12 PDB header:membrane protein Chain: A: PDB Molecule:protein prgh; PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392) 29 d1j6xa_ not modelled 21.6 11 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:Autoinducer-2 production protein LuxS 30 c3mf2B_ not modelled 20.2 8 PDB header:ligase Chain: B: PDB Molecule:bll0957 protein; PDBTitle: crystal structure of class ii aars homologue (bll0957) complexed with2 amp 31 d1dm9a_ not modelled 18.5 17 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Heat shock protein 15 kD 32 c1dm9A_ not modelled 18.5 17 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd 33 d1f75a_ not modelled 16.6 6 Fold:Undecaprenyl diphosphate synthase Superfamily:Undecaprenyl diphosphate synthase Family:Undecaprenyl diphosphate synthase 34 d1vh4a_ not modelled 16.5 14 Fold:Single-stranded right-handed beta-helix Superfamily:Stabilizer of iron transporter SufD Family:Stabilizer of iron transporter SufD 35 c3mx2A_ not modelled 16.2 21 PDB header:nuclear protein Chain: A: PDB Molecule:nucleoprotein; PDBTitle: lassa fever virus nucleoprotein complexed with dttp 36 d1ouoa_ not modelled 15.8 10 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:Endonuclease I 37 c2vfwB_ not modelled 14.2 10 PDB header:transferase Chain: B: PDB Molecule:short-chain z-isoprenyl diphosphate synthetase; PDBTitle: rv1086 native 38 d1pugb_ not modelled 14.1 16 Fold:YbaB-like Superfamily:YbaB-like Family:YbaB-like 39 d2c1wa1 not modelled 14.0 19 Fold:EndoU-like Superfamily:EndoU-like Family:Eukaryotic EndoU ribonuclease 40 c3f42A_ not modelled 13.9 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein hp0035; PDBTitle: crystal structure of uncharacterized protein hp0035 from helicobacter2 pylori 41 c3gr0D_ not modelled 13.4 12 PDB header:membrane protein Chain: D: PDB Molecule:protein prgh; PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-362) 42 d1frba_ not modelled 12.9 24 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 43 d1dq3a4 not modelled 12.5 14 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 44 c2h5gA_ not modelled 11.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:delta 1-pyrroline-5-carboxylate synthetase; PDBTitle: crystal structure of human pyrroline-5-carboxylate synthetase 45 d1j08a2 not modelled 11.2 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 46 c3ofgA_ not modelled 10.5 7 PDB header:chaperone Chain: A: PDB Molecule:boca/mesd chaperone for ywtd beta-propeller-egf protein 1; PDBTitle: structured domain of caenorhabditis elegans bmy-1 47 d1l8na1 not modelled 10.5 11 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain 48 d2rh3a1 not modelled 10.1 50 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:VirC2-like 49 d1h21a_ not modelled 10.0 17 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 50 c1mqrA_ not modelled 9.7 11 PDB header:hydrolase Chain: A: PDB Molecule:alpha-d-glucuronidase; PDBTitle: the crystal structure of alpha-d-glucuronidase (e386q) from bacillus2 stearothermophilus t-6 51 c3erpA_ not modelled 9.5 14 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of idp01002, a putative oxidoreductase from and essential2 gene of salmonella typhimurium 52 c2i9sA_ not modelled 9.5 13 PDB header:chaperone Chain: A: PDB Molecule:mesoderm development candidate 2; PDBTitle: the solution structure of the core of mesoderm development2 (mesd). 53 c3ofeB_ not modelled 9.3 6 PDB header:chaperone Chain: B: PDB Molecule:ldlr chaperone boca; PDBTitle: structured domain of drosophila melanogaster boca p41 2 2 crystal form 54 c3ry0A_ not modelled 9.3 8 PDB header:isomerase Chain: A: PDB Molecule:putative tautomerase; PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway 55 c1gqkB_ not modelled 9.1 11 PDB header:hydrolase Chain: B: PDB Molecule:alpha-d-glucuronidase; PDBTitle: structure of pseudomonas cellulosa alpha-d-glucuronidase2 complexed with glucuronic acid 56 d1z41a1 not modelled 8.8 16 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 57 d1lv3a_ not modelled 8.5 16 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Hypothetical zinc finger protein YacG 58 c1zxjB_ not modelled 8.4 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein mg377 homolog; PDBTitle: crystal structure of the hypthetical mycoplasma protein,2 mpn555 59 c1ybxA_ not modelled 8.4 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: conserved hypothetical protein cth-383 from clostridium thermocellum 60 d1mi3a_ not modelled 8.3 20 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 61 c2cqjA_ not modelled 8.3 7 PDB header:rna binding protein Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog 62 c2f7cA_ not modelled 8.2 13 PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator catm; PDBTitle: catm effector binding domain with its effector cis,cis-muconate 63 d1mp9a1 not modelled 8.2 7 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 64 d1jvaa3 not modelled 8.0 8 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 65 c1sjiA_ not modelled 7.9 18 PDB header:metal binding protein Chain: A: PDB Molecule:calsequestrin, cardiac muscle isoform; PDBTitle: comparing skeletal and cardiac calsequestrin structures and2 their calcium binding: a proposed mechanism for coupled3 calcium binding and protein polymerization 66 c2h9qC_ not modelled 7.9 13 PDB header:transcription Chain: C: PDB Molecule:hth-type transcriptional regulator catm; PDBTitle: crystal structure of the effector binding domain of a catm2 variant (r156h) 67 d1hw6a_ not modelled 7.8 17 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 68 d1q2za_ not modelled 7.7 12 Fold:alpha-alpha superhelix Superfamily:C-terminal domain of Ku80 Family:C-terminal domain of Ku80 69 d1c9wa_ not modelled 7.7 19 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 70 c3r6fA_ not modelled 7.4 10 PDB header:hydrolase Chain: A: PDB Molecule:hit family protein; PDBTitle: crystal structure of a zinc-containing hit family protein from2 encephalitozoon cuniculi 71 c3t4aG_ not modelled 7.3 23 PDB header:immune system Chain: G: PDB Molecule:fibrinogen-binding protein; PDBTitle: structure of a truncated form of staphylococcal complement inhibitor b2 bound to human c3c at 3.4 angstrom resolution 72 d1bjpa_ not modelled 7.3 14 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 73 c2xzeA_ not modelled 7.2 17 PDB header:hydrolase/protein transport Chain: A: PDB Molecule:stam-binding protein; PDBTitle: structural basis for amsh-escrt-iii chmp3 interaction 74 d1w2za2 not modelled 7.2 21 Fold:Cystatin-like Superfamily:Amine oxidase N-terminal region Family:Amine oxidase N-terminal region 75 c3ol0C_ not modelled 7.2 8 PDB header:de novo protein Chain: C: PDB Molecule:de novo designed monomer trefoil-fold sub-domain which PDBTitle: crystal structure of monofoil-4p homo-trimer: de novo designed monomer2 trefoil-fold sub-domain which forms homo-trimer assembly 76 d1nj1a3 not modelled 6.9 4 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 77 d2fm8a1 not modelled 6.9 2 Fold:Secretion chaperone-like Superfamily:Type III secretory system chaperone-like Family:Type III secretory system chaperone 78 c3mixA_ not modelled 6.8 12 PDB header:protein transport Chain: A: PDB Molecule:flagellar biosynthesis protein flha; PDBTitle: crystal structure of the cytosolic domain of b. subtilis flha 79 c3n4pA_ not modelled 6.7 18 PDB header:dna binding protein Chain: A: PDB Molecule:terminase subunit ul89 protein; PDBTitle: human cytomegalovirus terminase nuclease domain 80 c3abfB_ not modelled 6.7 10 PDB header:isomerase Chain: B: PDB Molecule:4-oxalocrotonate tautomerase; PDBTitle: crystal structure of a 4-oxalocrotonate tautomerase homologue2 (tthb242) 81 d1u7za_ not modelled 6.6 7 Fold:Ribokinase-like Superfamily:CoaB-like Family:CoaB-like 82 d2g2xa1 not modelled 6.5 20 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 83 c2d2rA_ not modelled 6.4 13 PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of helicobacter pylori undecaprenyl pyrophosphate2 synthase 84 c2qffA_ not modelled 6.3 23 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of staphylococcal complement inhibitor 85 d2z1ca1 not modelled 6.2 7 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 86 c3dh3C_ not modelled 6.0 21 PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate 87 c3inpA_ not modelled 6.0 14 PDB header:isomerase Chain: A: PDB Molecule:d-ribulose-phosphate 3-epimerase; PDBTitle: 2.05 angstrom resolution crystal structure of d-ribulose-phosphate 3-2 epimerase from francisella tularensis. 88 c2op8A_ not modelled 5.9 16 PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase ywhb; PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase 89 d1dzfa2 not modelled 5.8 26 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 90 c2kkvA_ not modelled 5.8 19 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of an integrase domain from protein2 spa4288 from salmonella enterica, northeast structural3 genomics consortium target slr105h 91 c3u1nC_ not modelled 5.8 19 PDB header:hydrolase Chain: C: PDB Molecule:sam domain and hd domain-containing protein 1; PDBTitle: structure of the catalytic core of human samhd1 92 d1qnaa1 not modelled 5.8 18 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 93 d1qnaa2 not modelled 5.7 11 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 94 d1aisa1 not modelled 5.7 4 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 95 c2h9bB_ not modelled 5.7 17 PDB header:transcription Chain: B: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: crystal structure of the effector binding domain of a benm variant2 (benm r156h/t157s) 96 d1x3ca1 not modelled 5.6 19 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 97 c3o0kB_ not modelled 5.5 20 PDB header:oxidoreductase Chain: B: PDB Molecule:aldo/keto reductase; PDBTitle: crystal structure of aldo/keto reductase from brucella melitensis 98 c3cwzB_ not modelled 5.5 11 PDB header:transport protein Chain: B: PDB Molecule:rab6-interacting protein 1; PDBTitle: strucure of rab6(gtp)-r6ip1 complex 99 d1f54a_ not modelled 5.5 4 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0