PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3n4pA_

Fold library id	PDB Header	Molecule	Title
c3n4pA_	PDB header: dna binding protein	Chain: A: PDB Molecule: terminase subunit ul89 protein;	PDBTitle: human cytomegalovirus terminase nuclease domain

Links to external resources
Added to library: Thu Oct 21 16:12:56 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L I T D Q S R E E F D I L R Y S T L N T N A Y D Y F G K T L Y V Y L D P A G T G V A A V G A Y R H Q F L I Y G L E H F F L S E S S E V A I A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
G G G
T T B
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E C A A H M I I S V L S L H P Y L D E L R I A V E G N T N Q A A A V R I A C L I R Q S V Q S S T L I R V L F Y H T P D Q N H I E Q P F Y L M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
B
S S
T T T S
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G R D K A L A V E Q F I S R F N S G Y I K A S Q E L V S Y T I K L S H D P I E Y L L E Q I Q N L H R S D D L I I A V I M A T Y L C D D I H A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T T
S S S B T T B
T
T T S G G G G

. . . . . .

Sequence I R F R V S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	I	T	D	Q	S	R	E	E	F	D	I	L	R	Y	S	T	L	N	T	N	A	Y	D	Y	F	G	K	T	L	Y	V	Y	L	D	P	A	G	T	G	V	A	A	V	G	A	Y	R	H	Q	F	L	I	Y	G	L	E	H	F	F	L	S	E	S	S	E	V	A	I	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															B		G	G	G					T	T	B																						T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	C	A	A	H	M	I	I	S	V	L	S	L	H	P	Y	L	D	E	L	R	I	A	V	E	G	N	T	N	Q	A	A	A	V	R	I	A	C	L	I	R	Q	S	V	Q	S	S	T	L	I	R	V	L	F	Y	H	T	P	D	Q	N	H	I	E	Q	P	F	Y	L	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T									B		S	S																																T	T	T				S		B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	R	D	K	A	L	A	V	E	Q	F	I	S	R	F	N	S	G	Y	I	K	A	S	Q	E	L	V	S	Y	T	I	K	L	S	H	D	P	I	E	Y	L	L	E	Q	I	Q	N	L	H	R	S	D	D	L	I	I	A	V	I	M	A	T	Y	L	C	D	D	I	H	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	T															T	T											S	S	S	B	T	T	B												T																	T	T	S	G	G	G	G
	.	.	.	.	.	.
Sequence	I	R	F	R	V	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G