Email l.a.kelley@imperial.ac.uk Description P75867 Date Thu Jan 5 12:15:15 GMT 2012 Unique Job ID 0af580f1a2cd6074

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3k1jA_ 100.0 22 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent protease lon; PDBTitle: crystal structure of lon protease from thermococcus onnurineus na1 2 c3m6aC_ 100.0 19 PDB header:hydrolase Chain: C: PDB Molecule:atp-dependent protease la 1; PDBTitle: crystal structure of bacillus subtilis lon c-terminal domain 3 c1z0eF_ 100.0 34 PDB header:hydrolase Chain: F: PDB Molecule:putative protease la homolog type; PDBTitle: crystal structure of a. fulgidus lon proteolytic domain 4 d1xhka_ 100.0 33 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:ATP-dependent protease Lon (La), catalytic domain 5 c2x36F_ 100.0 23 PDB header:hydrolase Chain: F: PDB Molecule:lon protease homolog, mitochondrial; PDBTitle: structure of the proteolytic domain of the human2 mitochondrial lon protease 6 d1rrea_ 100.0 27 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:ATP-dependent protease Lon (La), catalytic domain 7 c1ny5A_ 99.3 13 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state 8 c3dzdA_ 99.2 14 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state 9 d1qzma_ 99.1 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 10 c1x37A_ 99.1 18 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent protease la 1; PDBTitle: structure of bacillus subtilis lon protease ssd domain 11 d1ny5a2 97.7 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 12 c2c99A_ 97.6 12 PDB header:transcription regulation Chain: A: PDB Molecule:psp operon transcriptional activator; PDBTitle: structural basis of the nucleotide driven conformational2 changes in the aaa domain of transcription activator pspf 13 c3pxgA_ 97.0 16 PDB header:protein binding Chain: A: PDB Molecule:negative regulator of genetic competence clpc/mecb; PDBTitle: structure of meca121 and clpc1-485 complex 14 c1ojlF_ 96.8 15 PDB header:response regulator Chain: F: PDB Molecule:transcriptional regulatory protein zrar; PDBTitle: crystal structure of a sigma54-activator suggests the2 mechanism for the conformational switch necessary for3 sigma54 binding 15 c1qvrB_ 96.8 14 PDB header:chaperone Chain: B: PDB Molecule:clpb protein; PDBTitle: crystal structure analysis of clpb 16 c3f8tA_ 96.3 16 PDB header:hydrolase Chain: A: PDB Molecule:predicted atpase involved in replication control, PDBTitle: crystal structure analysis of a full-length mcm homolog2 from methanopyrus kandleri 17 c3f9vA_ 95.3 16 PDB header:hydrolase Chain: A: PDB Molecule:minichromosome maintenance protein mcm; PDBTitle: crystal structure of a near full-length archaeal mcm: functional2 insights for an aaa+ hexameric helicase 18 c2gefA_ 94.5 36 PDB header:hydrolase Chain: A: PDB Molecule:protease vp4; PDBTitle: crystal structure of a novel viral protease with a2 serine/lysine catalytic dyad mechanism 19 d1r6bx2 92.6 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 20 c3nbxX_ 92.1 14 PDB header:hydrolase Chain: X: PDB Molecule:atpase rava; PDBTitle: crystal structure of e. coli rava (regulatory atpase variant a) in2 complex with adp 21 c1r6bX_ not modelled 91.9 15 PDB header:hydrolase Chain: X: PDB Molecule:clpa protein; PDBTitle: high resolution crystal structure of clpa 22 d1um8a_ not modelled 91.6 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 23 c3pxiB_ not modelled 90.7 14 PDB header:protein binding Chain: B: PDB Molecule:negative regulator of genetic competence clpc/mecb; PDBTitle: structure of meca108:clpc 24 d1g8pa_ not modelled 90.6 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 25 c3co5B_ not modelled 88.0 14 PDB header:transcription regulator Chain: B: PDB Molecule:putative two-component system transcriptional response PDBTitle: crystal structure of sigma-54 interaction domain of putative2 transcriptional response regulator from neisseria gonorrhoeae 26 c3u5zM_ not modelled 85.8 14 PDB header:dna binding protein/dna Chain: M: PDB Molecule:dna polymerase accessory protein 44; PDBTitle: structure of t4 bacteriophage clamp loader bound to the t4 clamp,2 primer-template dna, and atp analog 27 c3pfiB_ not modelled 84.9 12 PDB header:hydrolase Chain: B: PDB Molecule:holliday junction atp-dependent dna helicase ruvb; PDBTitle: 2.7 angstrom resolution crystal structure of a probable holliday2 junction dna helicase (ruvb) from campylobacter jejuni subsp. jejuni3 nctc 11168 in complex with adenosine-5'-diphosphate 28 c3b9pA_ not modelled 82.7 15 PDB header:hydrolase Chain: A: PDB Molecule:cg5977-pa, isoform a; PDBTitle: spastin 29 c1sxjA_ not modelled 82.5 13 PDB header:replication Chain: A: PDB Molecule:activator 1 95 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) 30 d1iqpa2 not modelled 81.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 31 c1in8A_ not modelled 81.1 17 PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction dna helicase ruvb; PDBTitle: thermotoga maritima ruvb t158v 32 d1sxjb2 not modelled 80.7 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 33 c2r44A_ not modelled 79.7 9 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative atpase (chu_0153) from cytophaga2 hutchinsonii atcc 33406 at 2.00 a resolution 34 d1qvra3 not modelled 79.2 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 35 c1iy2A_ not modelled 78.9 14 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent metalloprotease ftsh; PDBTitle: crystal structure of the ftsh atpase domain from thermus2 thermophilus 36 c3d8bB_ not modelled 77.9 12 PDB header:hydrolase Chain: B: PDB Molecule:fidgetin-like protein 1; PDBTitle: crystal structure of human fidgetin-like protein 1 in complex with adp 37 d2ce7a2 not modelled 76.0 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 38 d1ixza_ not modelled 73.7 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 39 c3pvsA_ not modelled 72.6 13 PDB header:recombination Chain: A: PDB Molecule:replication-associated recombination protein a; PDBTitle: structure and biochemical activities of escherichia coli mgsa 40 c2r65A_ not modelled 68.4 14 PDB header:hydrolase Chain: A: PDB Molecule:cell division protease ftsh homolog; PDBTitle: crystal structure of helicobacter pylori atp dependent protease, ftsh2 adp complex 41 c2z4rB_ not modelled 68.0 10 PDB header:dna binding protein Chain: B: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: crystal structure of domain iii from the thermotoga2 maritima replication initiation protein dnaa 42 d1sxjc2 not modelled 68.0 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 43 d1dvoa_ not modelled 67.0 13 Fold:FinO-like Superfamily:FinO-like Family:FinO-like 44 d1r6bx3 not modelled 63.9 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 45 c2x8aA_ not modelled 61.5 13 PDB header:nuclear protein Chain: A: PDB Molecule:nuclear valosin-containing protein-like; PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain 46 c3bosA_ not modelled 61.1 13 PDB header:hydrolase regulator,dna binding protein Chain: A: PDB Molecule:putative dna replication factor; PDBTitle: crystal structure of a putative dna replication regulator hda2 (sama_1916) from shewanella amazonensis sb2b at 1.75 a resolution 47 d2hxja1 not modelled 56.1 9 Fold:FinO-like Superfamily:FinO-like Family:FinO-like 48 d1qvra2 not modelled 54.4 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 49 c2dhrC_ not modelled 53.1 15 PDB header:hydrolase Chain: C: PDB Molecule:ftsh; PDBTitle: whole cytosolic region of atp-dependent metalloprotease2 ftsh (g399l) 50 d1yvua1 not modelled 47.3 44 Fold:SH3-like barrel Superfamily:PAZ domain Family:PAZ domain 51 c3hteC_ not modelled 46.1 8 PDB header:motor protein Chain: C: PDB Molecule:atp-dependent clp protease atp-binding subunit clpx; PDBTitle: crystal structure of nucleotide-free hexameric clpx 52 c3hu2C_ not modelled 45.4 14 PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97 n-d1 r86a mutant in complex with atpgs 53 d1njfa_ not modelled 43.8 23 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 54 c3cf1C_ not modelled 41.4 14 PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx 55 c1sxjE_ not modelled 38.0 12 PDB header:replication Chain: E: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) 56 d1in4a2 not modelled 34.9 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 57 c3pi7A_ not modelled 33.5 12 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh oxidoreductase; PDBTitle: crystal structure of a putative nadph:quinone reductase (mll3093) from2 mesorhizobium loti at 1.71 a resolution 58 d1rm6a2 not modelled 32.8 8 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 59 c1wygA_ not modelled 32.5 17 PDB header:oxidoreductase Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s) 60 c2w54F_ not modelled 30.9 10 PDB header:oxidoreductase Chain: F: PDB Molecule:xanthine dehydrogenase; PDBTitle: crystal structure of xanthine dehydrogenase from2 rhodobacter capsulatus in complex with bound inhibitor3 pterin-6-aldehyde 61 d1ofha_ not modelled 30.2 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 62 c2c0cB_ not modelled 28.9 7 PDB header:oxidoreductase Chain: B: PDB Molecule:zinc binding alcohol dehydrogenase, domain PDBTitle: structure of the mgc45594 gene product 63 d1qf8a_ not modelled 26.9 24 Fold:Rubredoxin-like Superfamily:Casein kinase II beta subunit Family:Casein kinase II beta subunit 64 c2hcyD_ not modelled 25.9 9 PDB header:oxidoreductase Chain: D: PDB Molecule:alcohol dehydrogenase 1; PDBTitle: yeast alcohol dehydrogenase i, saccharomyces cerevisiae fermentative2 enzyme 65 c1wlyA_ not modelled 25.1 17 PDB header:oxidoreductase Chain: A: PDB Molecule:2-haloacrylate reductase; PDBTitle: crystal structure of 2-haloacrylate reductase 66 c2c9kA_ not modelled 24.3 23 PDB header:toxin Chain: A: PDB Molecule:pesticidal crystal protein cry4aa; PDBTitle: structure of the functional form of the mosquito-larvicidal2 cry4aa toxin from bacillus thuringiensis at 2.8 a3 resolution 67 d1d2na_ not modelled 24.2 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 68 c2z5wA_ not modelled 23.5 21 PDB header:structural protein Chain: A: PDB Molecule:bcla protein; PDBTitle: tbcla, a recombinant spore surface protein from bacillus anthracis 69 d1v97a5 not modelled 23.3 14 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 70 c1wckA_ not modelled 23.2 21 PDB header:structural protein Chain: A: PDB Molecule:bcla protein; PDBTitle: crystal structure of the c-terminal domain of bcla, the2 major antigen of the exosporium of the bacillus anthracis3 spore. 71 c3eihB_ not modelled 23.1 12 PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of s.cerevisiae vps4 in the presence of atpgammas 72 c2pnmA_ not modelled 22.2 19 PDB header:hydrolase Chain: A: PDB Molecule:protease vp4; PDBTitle: crystal structure of vp4 protease from infectious pancreatic necrosis2 virus (ipnv) in space group p6122 73 c2qz4A_ not modelled 21.9 12 PDB header:hydrolase Chain: A: PDB Molecule:paraplegin; PDBTitle: human paraplegin, aaa domain in complex with adp 74 c1nsfA_ not modelled 21.3 10 PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) 75 d1hiod_ not modelled 21.3 11 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 76 c3gazA_ not modelled 20.6 22 PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase superfamily protein; PDBTitle: crystal structure of an alcohol dehydrogenase superfamily protein from2 novosphingobium aromaticivorans 77 c1hk8A_ not modelled 20.2 28 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 78 d1hk8a_ not modelled 20.2 28 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 79 d1sxja2 not modelled 20.0 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 80 c1uufA_ not modelled 19.5 13 PDB header:oxidoreductase Chain: A: PDB Molecule:zinc-type alcohol dehydrogenase-like protein PDBTitle: crystal structure of a zinc-type alcohol dehydrogenase-like2 protein yahk 81 d1o75a2 not modelled 19.3 23 Fold:Immunoglobulin-like beta-sandwich Superfamily:Tp47 lipoprotein, middle and C-terminal domains Family:Tp47 lipoprotein, middle and C-terminal domains 82 c2p65A_ not modelled 19.1 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pf08_0063; PDBTitle: crystal structure of the first nucleotide binding domain of2 chaperone clpb1, putative, (pv089580) from plasmodium vivax 83 d1jrob2 not modelled 19.0 10 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 84 c1x59A_ not modelled 19.0 22 PDB header:protein binding Chain: A: PDB Molecule:histidyl-trna synthetase; PDBTitle: solution structures of the whep-trs domain of human2 histidyl-trna synthetase 85 d2hfqa1 not modelled 18.8 16 Fold:NE1680-like Superfamily:NE1680-like Family:NE1680-like 86 c2hfqA_ not modelled 18.8 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: nmr structure of protein ne1680 from nitrosomonas europaea:2 northeast structural genomics consortium target net5 87 c1zsvB_ not modelled 18.7 31 PDB header:oxidoreductase Chain: B: PDB Molecule:nadp-dependent leukotriene b4 12- PDBTitle: crystal structure of human nadp-dependent leukotriene b4 12-2 hydroxydehydrogenase 88 c3jynA_ not modelled 18.6 23 PDB header:oxidoreductase Chain: A: PDB Molecule:quinone oxidoreductase; PDBTitle: crystal structures of pseudomonas syringae pv. tomato dc30002 quinone oxidoreductase complexed with nadph 89 c1k47F_ not modelled 16.3 12 PDB header:transferase Chain: F: PDB Molecule:phosphomevalonate kinase; PDBTitle: crystal structure of the streptococcus pneumoniae2 phosphomevalonate kinase (pmk) 90 c3eubL_ not modelled 16.1 14 PDB header:oxidoreductase Chain: L: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine 91 c1sb3D_ not modelled 16.1 8 PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxybenzoyl-coa reductase alpha subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica 92 c2vcyA_ not modelled 16.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:trans-2-enoyl-coa reductase; PDBTitle: crystal structure of 2-enoyl thioester reductase of human2 fas ii 93 c1iqpF_ not modelled 15.8 16 PDB header:replication Chain: F: PDB Molecule:rfcs; PDBTitle: crystal structure of the clamp loader small subunit from2 pyrococcus furiosus 94 c2om6A_ not modelled 15.5 23 PDB header:hydrolase Chain: A: PDB Molecule:probable phosphoserine phosphatase; PDBTitle: hypothetical protein (probable phosphoserine phosph (ph0253) from2 pyrococcus horikoshii ot3 95 d1sxjd2 not modelled 15.5 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 96 d1x6va3 not modelled 15.3 22 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Adenosine-5'phosphosulfate kinase (APS kinase) 97 c3gohA_ not modelled 15.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase, zinc-containing; PDBTitle: crystal structure of alcohol dehydrogenase superfamily protein2 (np_718042.1) from shewanella oneidensis at 1.55 a resolution 98 c3hrdE_ not modelled 15.0 18 PDB header:oxidoreductase Chain: E: PDB Molecule:nicotinate dehydrogenase large molybdopterin PDBTitle: crystal structure of nicotinate dehydrogenase 99 c1yadD_ not modelled 14.8 23 PDB header:transcription Chain: D: PDB Molecule:regulatory protein teni; PDBTitle: structure of teni from bacillus subtilis