Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3u5zM_

Fold library idPDB HeaderMoleculeTitle
c3u5zM_PDB header: dna binding protein/dnaChain: M: PDB Molecule: dna polymerase accessory protein 44;PDBTitle: structure of t4 bacteriophage clamp loader bound to the t4 clamp,2 primer-template dna, and atp analog


Added to library: Sat Jan 7 23:29:28 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SMITVNEKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP)

S



S

SSTTTS

SSTTTS


SS



SSS
SSTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence DMMFVNGSDCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP) GGG

TS

TT


S


GGGTTTTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence NIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIG
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)
GGGS
STT


T
S
ST
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence ELDSYSSKGVLDAGILSLVTNDRGAIDDVLESLKNKDVKQLRALAPKYAADYSWFVGKLAEEIYSRVTPQ
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP) T
TTS
TTTT




TT
SSSSS
 .........290.........300.........310.........320
Sequence SIIRMYEIVGENNQYHGIAANTELHLAYLFIQLACEMQWK
Predicted secondary structure






SS confidence







































Known secondary structure (DSSP) TTT
S





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D