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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3eihB_

Fold library idPDB HeaderMoleculeTitle
c3eihB_PDB header: protein transportChain: B: PDB Molecule: vacuolar protein sorting-associated protein 4;PDBTitle: crystal structure of s.cerevisiae vps4 in the presence of2 atpgammas


Added to library: Tue Mar 16 13:44:08 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE
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Known secondary structure (DSSP)

SS




STTS
S
T
GGG

TT





STTS
T
 .........80.........90.........100.........110.........120.........130.........140
Sequence ANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQ
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Known secondary structure (DSSP) TT
TTTSSSS
TTTTTSSSGGGG



SSSSSSSSSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence MNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGA
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Known secondary structure (DSSP) TTSTTTTS
SS

TTS







TTS




 .........220.........230.........240.........250.........260.........270.........280
Sequence MTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEP
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Known secondary structure (DSSP) T
TT

T




TT
SS


SSSTT

B

STTS
GGGB


 .........290.........300.........310......
Sequence DLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE
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Known secondary structure (DSSP)





SS
SGGGTTS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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