Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	L	R	I	T	S	R	K	K	L	T	S	L	L	C	A	L	G	L	I	S	I	V	A	I	Y	P	R	Q	T	V	N	F	F	Y	S	T	A	V	Q	I	T	D	Y	I	H	F	Y	G	Y	R	P	V	K	S	F	A	I	R
Secondary structure
SS confidence
Disorder		?	?	?	?																			?	?	?	?	?	?					?																						?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	P	A	S	Y	T	I	H	G	I	D	V	S	R	W	Q	E	R	I	D	W	Q	R	V	A	K	M	R	D	N	G	I	R	L	Q	F	A	F	I	K	A	T	E	G	E	K	L	V	D	P	Y	F	S	R	N	W	Q	L	S	R
Secondary structure
SS confidence
Disorder		?	?	?																							?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	N	G	L	L	R	G	A	Y	H	Y	F	S	P	S	V	S	A	S	V	Q	A	R	L	F	L	Q	T	V	D	F	S	Q	G	D	F	P	A	V	L	D	V	E	E	R	G	K	L	S	A	K	E	L	R	K	R	V	S	Q	W
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	K	M	V	E	K	S	T	G	K	K	P	I	I	Y	S	G	A	V	F	Y	H	T	N	L	A	G	Y	F	N	E	Y	P	W	W	V	A	H	Y	Y	Q	R	R	P	D	N	D	G	M	A	W	R	F	W	Q	H	S	D	R	G
Secondary structure
SS confidence
Disorder																																												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Sequence		Q	V	D	G	I	N	G	P	V	D	F	N	V	F	N	G	T	V	E	E	L	Q	A	F	V	D	G	I	K	E	T	P
Secondary structure
SS confidence
Disorder																											?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2wag chain A Region: 62 - 264 Aligned: 198 Modelled: 198 Confidence: 100.0% Identity: 35% PDB header:hydrolase Chain: A: PDB Molecule:lysozyme, putative; PDBTitle: the structure of a family 25 glycosyl hydrolase from2 bacillus anthracis. Phyre2 PDB 1jfx chain A Region: 64 - 267 Aligned: 199 Modelled: 199 Confidence: 100.0% Identity: 36% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: 1,4-beta-N-acetylmuraminidase Phyre2 PDB 2x8r chain E Region: 64 - 267 Aligned: 194 Modelled: 199 Confidence: 100.0% Identity: 31% PDB header:hydrolase Chain: E: PDB Molecule:glycosyl hydrolase; PDBTitle: the structure of a family gh25 lysozyme from aspergillus2 fumigatus Phyre2 PDB 2wwc chain A Region: 45 - 255 Aligned: 206 Modelled: 211 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:1,4-beta-n-acetylmuramidase; PDBTitle: 3d-structure of the modular autolysin lytc from2 streptococcus pneumoniae in complex with synthetic3 peptidoglycan ligand Phyre2 PDB 2nw0 chain B Region: 68 - 271 Aligned: 186 Modelled: 204 Confidence: 100.0% Identity: 26% PDB header:hydrolase Chain: B: PDB Molecule:plyb; PDBTitle: crystal structure of a lysin Phyre2 PDB 2j8g chain A domain 2 Region: 68 - 251 Aligned: 171 Modelled: 184 Confidence: 100.0% Identity: 23% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: 1,4-beta-N-acetylmuraminidase Phyre2 PDB 2j8f chain A Region: 64 - 253 Aligned: 177 Modelled: 185 Confidence: 100.0% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:lysozyme; PDBTitle: crystal structure of the modular cpl-1 endolysin complexed2 with a peptidoglycan analogue (e94q mutant in complex with3 a disaccharide-pentapeptide) Phyre2 PDB 1sfs chain A Region: 67 - 256 Aligned: 177 Modelled: 189 Confidence: 98.6% Identity: 19% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: 1,4-beta-N-acetylmuraminidase Phyre2 PDB 1sfs chain A Region: 67 - 256 Aligned: 177 Modelled: 189 Confidence: 98.6% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: 1.07 a crystal structure of an uncharacterized b.2 stearothermophilus protein Phyre2 PDB 1hl9 chain A domain 2 Region: 81 - 130 Aligned: 46 Modelled: 50 Confidence: 64.4% Identity: 15% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: Putative alpha-L-fucosidase, catalytic domain Phyre2 PDB 1e4i chain A Region: 78 - 196 Aligned: 78 Modelled: 80 Confidence: 63.8% Identity: 24% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: Family 1 of glycosyl hydrolase Phyre2 PDB 1hjq chain A Region: 66 - 194 Aligned: 119 Modelled: 129 Confidence: 62.7% Identity: 15% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: beta-glycanases Phyre2 PDB 1hjs chain A Region: 66 - 191 Aligned: 116 Modelled: 125 Confidence: 62.5% Identity: 15% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: beta-glycanases Phyre2 PDB 2wvs chain D Region: 81 - 130 Aligned: 46 Modelled: 50 Confidence: 57.5% Identity: 13% PDB header:hydrolase Chain: D: PDB Molecule:alpha-l-fucosidase; PDBTitle: crystal structure of an alpha-l-fucosidase gh29 trapped2 covalent intermediate from bacteroides thetaiotaomicron in3 complex with 2-fluoro-fucosyl fluoride using an e288q4 mutant Phyre2 PDB 3s6d chain A Region: 75 - 197 Aligned: 112 Modelled: 118 Confidence: 56.2% Identity: 21% PDB header:isomerase Chain: A: PDB Molecule:putative triosephosphate isomerase; PDBTitle: crystal structure of a putative triosephosphate isomerase from2 coccidioides immitis Phyre2 PDB 3gza chain B Region: 81 - 130 Aligned: 46 Modelled: 50 Confidence: 54.8% Identity: 28% PDB header:hydrolase Chain: B: PDB Molecule:putative alpha-l-fucosidase; PDBTitle: crystal structure of putative alpha-l-fucosidase (np_812709.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.60 a resolution Phyre2 PDB 3ahx chain C Region: 78 - 196 Aligned: 78 Modelled: 80 Confidence: 53.4% Identity: 18% PDB header:hydrolase Chain: C: PDB Molecule:beta-glucosidase a; PDBTitle: crystal structure of beta-glucosidase a from bacterium clostridium2 cellulovorans Phyre2 PDB 1hl8 chain B Region: 81 - 130 Aligned: 46 Modelled: 50 Confidence: 51.9% Identity: 15% PDB header:hydrolase Chain: B: PDB Molecule:putative alpha-l-fucosidase; PDBTitle: crystal structure of thermotoga maritima alpha-fucosidase Phyre2 PDB 1euc chain A domain 2 Region: 116 - 194 Aligned: 72 Modelled: 74 Confidence: 50.5% Identity: 17% Fold: Flavodoxin-like Superfamily: Succinyl-CoA synthetase domains Family: Succinyl-CoA synthetase domains Phyre2 PDB 2j78 chain A domain 1 Region: 78 - 196 Aligned: 78 Modelled: 80 Confidence: 44.6% Identity: 24% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: Family 1 of glycosyl hydrolase Phyre2 1 c2wagA_ 2 d1jfxa_ 3 c2x8rE_ 4 c2wwcA_ 5 c2nw0B_ 6 d2j8ga2 7 c2j8fA_ 8 d1sfsa_ 9 c1sfsA_ 10 d1hl9a2 11 d1e4ia_ 12 d1hjqa_ 13 d1hjsa_ 14 c2wvsD_ 15 c3s6dA_ 16 c3gzaB_ 17 c3ahxC_ 18 c1hl8B_ 19 d1euca2 20 d2j78a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2wagA_ 100.0 35 PDB header:hydrolase Chain: A: PDB Molecule:lysozyme, putative; PDBTitle: the structure of a family 25 glycosyl hydrolase from2 bacillus anthracis. 2 d1jfxa_ 100.0 36 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:1,4-beta-N-acetylmuraminidase 3 c2x8rE_ 100.0 31 PDB header:hydrolase Chain: E: PDB Molecule:glycosyl hydrolase; PDBTitle: the structure of a family gh25 lysozyme from aspergillus2 fumigatus 4 c2wwcA_ 100.0 19 PDB header:hydrolase Chain: A: PDB Molecule:1,4-beta-n-acetylmuramidase; PDBTitle: 3d-structure of the modular autolysin lytc from2 streptococcus pneumoniae in complex with synthetic3 peptidoglycan ligand 5 c2nw0B_ 100.0 26 PDB header:hydrolase Chain: B: PDB Molecule:plyb; PDBTitle: crystal structure of a lysin 6 d2j8ga2 100.0 23 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:1,4-beta-N-acetylmuraminidase 7 c2j8fA_ 100.0 23 PDB header:hydrolase Chain: A: PDB Molecule:lysozyme; PDBTitle: crystal structure of the modular cpl-1 endolysin complexed2 with a peptidoglycan analogue (e94q mutant in complex with3 a disaccharide-pentapeptide) 8 d1sfsa_ 98.6 19 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:1,4-beta-N-acetylmuraminidase 9 c1sfsA_ 98.6 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: 1.07 a crystal structure of an uncharacterized b.2 stearothermophilus protein 10 d1hl9a2 64.4 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Putative alpha-L-fucosidase, catalytic domain 11 d1e4ia_ 63.8 24 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Family 1 of glycosyl hydrolase 12 d1hjqa_ 62.7 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 13 d1hjsa_ 62.5 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 14 c2wvsD_ 57.5 13 PDB header:hydrolase Chain: D: PDB Molecule:alpha-l-fucosidase; PDBTitle: crystal structure of an alpha-l-fucosidase gh29 trapped2 covalent intermediate from bacteroides thetaiotaomicron in3 complex with 2-fluoro-fucosyl fluoride using an e288q4 mutant 15 c3s6dA_ 56.2 21 PDB header:isomerase Chain: A: PDB Molecule:putative triosephosphate isomerase; PDBTitle: crystal structure of a putative triosephosphate isomerase from2 coccidioides immitis 16 c3gzaB_ 54.8 28 PDB header:hydrolase Chain: B: PDB Molecule:putative alpha-l-fucosidase; PDBTitle: crystal structure of putative alpha-l-fucosidase (np_812709.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.60 a resolution 17 c3ahxC_ 53.4 18 PDB header:hydrolase Chain: C: PDB Molecule:beta-glucosidase a; PDBTitle: crystal structure of beta-glucosidase a from bacterium clostridium2 cellulovorans 18 c1hl8B_ 51.9 15 PDB header:hydrolase Chain: B: PDB Molecule:putative alpha-l-fucosidase; PDBTitle: crystal structure of thermotoga maritima alpha-fucosidase 19 d1euca2 50.5 17 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 20 d2j78a1 44.6 24 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Family 1 of glycosyl hydrolase 21 d1tvna1 not modelled 44.4 6 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 22 c3eypB_ not modelled 42.2 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative alpha-l-fucosidase; PDBTitle: crystal structure of putative alpha-l-fucosidase from bacteroides2 thetaiotaomicron 23 c3ebvA_ not modelled 39.0 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:chinitase a; PDBTitle: crystal structure of putative chitinase a from streptomyces2 coelicolor. 24 c2jgqB_ not modelled 37.5 11 PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: kinetics and structural properties of triosephosphate2 isomerase from helicobacter pylori 25 d1egza_ not modelled 37.0 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 26 d1foba_ not modelled 36.6 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 27 c3mo4B_ not modelled 34.6 13 PDB header:hydrolase Chain: B: PDB Molecule:alpha-1,3/4-fucosidase; PDBTitle: the crystal structure of an alpha-(1-3,4)-fucosidase from2 bifidobacterium longum subsp. infantis atcc 15697 28 c3th6B_ not modelled 34.5 16 PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase from rhipicephalus2 (boophilus) microplus. 29 c3qr3B_ not modelled 29.2 8 PDB header:hydrolase Chain: B: PDB Molecule:endoglucanase eg-ii; PDBTitle: crystal structure of cel5a (eg2) from hypocrea jecorina (trichoderma2 reesei) 30 d1o5xa_ not modelled 28.4 18 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 31 c3krsB_ not modelled 28.2 12 PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: structure of triosephosphate isomerase from cryptosporidium parvum at2 1.55a resolution 32 d1ur4a_ not modelled 27.5 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 33 c3ianA_ not modelled 25.4 21 PDB header:hydrolase Chain: A: PDB Molecule:chitinase; PDBTitle: crystal structure of a chitinase from lactococcus lactis2 subsp. lactis 34 d1wkya2 not modelled 21.0 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 35 c2xucA_ not modelled 20.4 19 PDB header:hydrolase Chain: A: PDB Molecule:chitinase; PDBTitle: natural product-guided discovery of a fungal chitinase2 inhibitor 36 c3c65A_ not modelled 20.3 26 PDB header:hydrolase Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of bacillus stearothermophilus uvrc 5'2 endonuclease domain 37 d1gnxa_ not modelled 19.9 17 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Family 1 of glycosyl hydrolase 38 d1f61a_ not modelled 17.3 12 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 39 c3e5bB_ not modelled 16.9 13 PDB header:lyase Chain: B: PDB Molecule:isocitrate lyase; PDBTitle: 2.4 a crystal structure of isocitrate lyase from brucella2 melitensis 40 d1ktba2 not modelled 16.2 18 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 41 c2g3nA_ not modelled 15.6 10 PDB header:hydrolase Chain: A: PDB Molecule:alpha-glucosidase; PDBTitle: crystal structure of the sulfolobus solfataricus alpha-2 glucosidase mala in complex with beta-octyl-glucopyranoside 42 c2pt7G_ not modelled 15.3 12 PDB header:hydrolase/protein binding Chain: G: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of cag virb11 (hp0525) and an inhibitory protein2 (hp1451) 43 d1b9ba_ not modelled 13.6 14 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 44 c3mmwB_ not modelled 13.3 18 PDB header:hydrolase Chain: B: PDB Molecule:endoglucanase; PDBTitle: crystal structure of endoglucanase cel5a from the hyperthermophilic2 thermotoga maritima 45 d1q1ra3 not modelled 13.3 22 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain 46 c2dskA_ not modelled 13.1 14 PDB header:hydrolase Chain: A: PDB Molecule:chitinase; PDBTitle: crystal structure of catalytic domain of hyperthermophilic chitinase2 from pyrococcus furiosus 47 d1qcrd2 not modelled 13.0 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:Cytochrome bc1 domain 48 d1mo0a_ not modelled 12.3 16 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 49 c3ffjA_ not modelled 12.2 7 PDB header:hydrolase Chain: A: PDB Molecule:glycosyl hydrolase (family 31); PDBTitle: the crystal structure of the glycosyl hydrolase (family 31) from2 ruminococcus obeum atcc 29174 50 c2qmjA_ not modelled 12.0 12 PDB header:hydrolase Chain: A: PDB Molecule:maltase-glucoamylase, intestinal; PDBTitle: crystral structure of the n-terminal subunit of human maltase-2 glucoamylase in complex with acarbose 51 c3lecA_ not modelled 11.9 18 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:nadb-rossmann superfamily protein; PDBTitle: the crystal structure of a protein in the nadb-rossmann2 superfamily from streptococcus agalactiae to 1.8a 52 d1trea_ not modelled 11.6 19 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 53 d1o0sa2 not modelled 11.6 28 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Malic enzyme N-domain 54 c1qcrD_ not modelled 11.5 21 PDB header: PDB COMPND: 55 d1suxa_ not modelled 11.2 11 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 56 c2rirA_ not modelled 10.9 12 PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase, a chain; PDBTitle: crystal structure of dipicolinate synthase, a chain, from bacillus2 subtilis 57 c3lppA_ not modelled 10.8 10 PDB header:hydrolase Chain: A: PDB Molecule:sucrase-isomaltase; PDBTitle: crystal complex of n-terminal sucrase-isomaltase with kotalanol 58 d1qoxa_ not modelled 10.8 32 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Family 1 of glycosyl hydrolase 59 d1aw1a_ not modelled 10.7 15 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 60 c3gnoA_ not modelled 10.6 26 PDB header:hydrolase Chain: A: PDB Molecule:os03g0212800 protein; PDBTitle: crystal structure of a rice os3bglu6 beta-glucosidase 61 d1nqua_ not modelled 10.2 14 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 62 d1pj3a2 not modelled 10.2 18 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Malic enzyme N-domain 63 d1neya_ not modelled 10.1 14 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 64 c2dp3A_ not modelled 10.0 16 PDB header:isomerase Chain: A: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of a double mutant (c202a/a198v) of triosephosphate2 isomerase from giardia lamblia 65 d1eg7a_ not modelled 9.9 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 66 d1kv5a_ not modelled 9.7 10 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 67 c2rgmA_ not modelled 9.5 34 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: rice bglu1 beta-glucosidase, a plant exoglucanase/beta-glucosidase 68 c3kxqB_ not modelled 9.4 11 PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase from bartonella2 henselae at 1.6a resolution 69 d2btma_ not modelled 9.3 13 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 70 c3civA_ not modelled 9.2 18 PDB header:hydrolase Chain: A: PDB Molecule:endo-beta-1,4-mannanase; PDBTitle: crystal structure of the endo-beta-1,4-mannanase from2 alicyclobacillus acidocaldarius 71 c2h6rG_ not modelled 8.9 15 PDB header:isomerase Chain: G: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase (tim) from2 methanocaldococcus jannaschii 72 c2j75A_ not modelled 8.8 34 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase a; PDBTitle: beta-glucosidase from thermotoga maritima in complex with2 noeuromycin 73 d2ebna_ not modelled 8.8 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Type II chitinase 74 c2r94B_ not modelled 8.6 11 PDB header:lyase Chain: B: PDB Molecule:2-keto-3-deoxy-(6-phospho-)gluconate aldolase; PDBTitle: crystal structure of kd(p)ga from t.tenax 75 c1yyaA_ not modelled 8.5 17 PDB header:isomerase Chain: A: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of tt0473, putative triosephosphate isomerase from2 thermus thermophilus hb8 76 c3bghB_ not modelled 8.5 35 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative neuraminyllactose-binding hemagglutinin homolog; PDBTitle: crystal structure of putative neuraminyllactose-binding hemagglutinin2 homolog from helicobacter pylori 77 c3d4oA_ not modelled 8.1 19 PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase subunit a; PDBTitle: crystal structure of dipicolinate synthase subunit a (np_243269.1)2 from bacillus halodurans at 2.10 a resolution 78 c1zrtD_ not modelled 8.1 19 PDB header:oxidoreductase/metal transport Chain: D: PDB Molecule:cytochrome c1; PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound 79 c3jugA_ not modelled 8.1 11 PDB header:hydrolase Chain: A: PDB Molecule:beta-mannanase; PDBTitle: crystal structure of endo-beta-1,4-mannanase from the alkaliphilic2 bacillus sp. n16-5 80 c2nrzB_ not modelled 8.0 50 PDB header:hydrolase Chain: B: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation 81 c3cz8A_ not modelled 7.9 10 PDB header:hydrolase Chain: A: PDB Molecule:putative sporulation-specific glycosylase ydhd; PDBTitle: crystal structure of putative sporulation-specific glycosylase ydhd2 from bacillus subtilis 82 c2dgaA_ not modelled 7.6 26 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: crystal structure of hexameric beta-glucosidase in wheat 83 d1oa3a_ not modelled 7.5 19 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Xylanase/endoglucanase 11/12 84 c3d5hA_ not modelled 7.2 14 PDB header:protein binding Chain: A: PDB Molecule:haementhin; PDBTitle: crystal structure of haementhin from haemanthus multiflorus2 at 2.0a resolution: formation of a novel loop on a tim3 barrel fold and its functional significance 85 d1pbga_ not modelled 7.2 21 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Family 1 of glycosyl hydrolase 86 d2i9ia1 not modelled 7.1 19 Fold:Anticodon-binding domain-like Superfamily:XCC0632-like Family:NLBH-like 87 c2i9iA_ not modelled 7.1 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of helicobacter pylori protein hp0492 88 c1wkyA_ not modelled 7.1 10 PDB header:hydrolase Chain: A: PDB Molecule:endo-beta-1,4-mannanase; PDBTitle: crystal structure of alkaline mannanase from bacillus sp. strain jamb-2 602: catalytic domain and its carbohydrate binding module 89 d1u83a_ not modelled 7.1 17 Fold:TIM beta/alpha-barrel Superfamily:(2r)-phospho-3-sulfolactate synthase ComA Family:(2r)-phospho-3-sulfolactate synthase ComA 90 c1u83A_ not modelled 7.1 17 PDB header:lyase Chain: A: PDB Molecule:phosphosulfolactate synthase; PDBTitle: psl synthase from bacillus subtilis 91 d1ta3a_ not modelled 7.0 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Type II chitinase 92 c2fpgA_ not modelled 6.9 14 PDB header:ligase Chain: A: PDB Molecule:succinyl-coa ligase [gdp-forming] alpha-chain, PDBTitle: crystal structure of pig gtp-specific succinyl-coa2 synthetase in complex with gdp 93 d1edta_ not modelled 6.9 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Type II chitinase 94 d1rvv1_ not modelled 6.7 14 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 95 d1r2ra_ not modelled 6.6 14 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 96 c2uy2A_ not modelled 6.6 19 PDB header:hydrolase Chain: A: PDB Molecule:endochitinase; PDBTitle: sccts1_apo crystal structure 97 d1m6ja_ not modelled 6.6 11 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 98 c3thdD_ not modelled 6.6 14 PDB header:hydrolase Chain: D: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of human beta-galactosidase in complex with 1-2 deoxygalactonojirimycin 99 c3topA_ not modelled 6.6 6 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:maltase-glucoamylase, intestinal; PDBTitle: crystral structure of the c-terminal subunit of human maltase-2 glucoamylase in complex with acarbose

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0