PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1jfxa_

Fold library id	Fold	Superfamily	Family
d1jfxa_	TIM beta/alpha-barrel	(Trans)glycosidases	1,4-beta-N-acetylmuraminidase

Links to external resources
Added to library: Tue Mar 16 13:05:46 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D T S G V Q G I D V S H W Q G S I N W S S V K S A G M S F A Y I K A T E G T N Y K D D R F S A N Y T N A Y N A G I I R G A Y H F A R P N A S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
G G G
S
T T
T T T
T T T T
T T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S G T A Q A D Y F A S N G G G W S R D N R T L P G V L D I E H N P S G A M C Y G L S T T Q M R T W I N D F H A R Y K A R T T R D V V I Y T T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S S B
S
S S S
T T T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A S W W N T C T G S W N G M A A K S P F W V A H W G V S A P T V P S G F P T W T F W Q Y S A T G R V G G V S G D V D R N K F N G S A A R L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T T T T
T T
S S
T T S S S
S T T S S

. . . . . . .

Sequence A L A N N T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	T	S	G	V	Q	G	I	D	V	S	H	W	Q	G	S	I	N	W	S	S	V	K	S	A	G	M	S	F	A	Y	I	K	A	T	E	G	T	N	Y	K	D	D	R	F	S	A	N	Y	T	N	A	Y	N	A	G	I	I	R	G	A	Y	H	F	A	R	P	N	A	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S							G	G	G		S									T	T											T	T	T				T	T											T	T											T	T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	G	T	A	Q	A	D	Y	F	A	S	N	G	G	G	W	S	R	D	N	R	T	L	P	G	V	L	D	I	E	H	N	P	S	G	A	M	C	Y	G	L	S	T	T	Q	M	R	T	W	I	N	D	F	H	A	R	Y	K	A	R	T	T	R	D	V	V	I	Y	T	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T						S	S	S	B									S		S	S	S		T	T	T	T																						S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	S	W	W	N	T	C	T	G	S	W	N	G	M	A	A	K	S	P	F	W	V	A	H	W	G	V	S	A	P	T	V	P	S	G	F	P	T	W	T	F	W	Q	Y	S	A	T	G	R	V	G	G	V	S	G	D	V	D	R	N	K	F	N	G	S	A	A	R	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	S			T	T	T	T	T								T	T		S	S					T	T	S	S	S		S											T	T											S	S
	.	.	.	.	.	.	.
Sequence	A	L	A	N	N	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T