Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP25740
DateThu Jan 5 11:42:26 GMT 2012
Unique Job ID03d889232a5f68e9

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2iw1a1
Top template information
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
Confidence and coverage
Confidence:100.0% Coverage: 99%
369 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHT
Secondary structure 



























SS confidence 



























































Disorder  ?

























































?
Disorder confidence 



























































 
   .........70.........80.........90.........100.........110.........120
Sequence  NHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSR
Secondary structure 























SS confidence 



























































Disorder  ?
?
?






















































Disorder confidence 



























































 
   .........130.........140.........150.........160.........170.........180
Sequence  YRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIP
Secondary structure 






















SS confidence 



























































Disorder 




















































?
?????
Disorder confidence 



























































 
   .........190.........200.........210.........220.........230.........240
Sequence  NSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPR
Secondary structure 






















SS confidence 



























































Disorder  ??

























































Disorder confidence 



























































 
   .........250.........260.........270.........280.........290.........300
Sequence  KFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTT
Secondary structure 






















SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........310.........320.........330.........340.........350.........360
Sequence  AVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSL
Secondary structure 


















SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........370....
Sequence  PEKAADIITGGLDG
Secondary structure 

SS confidence 













Disorder 











??
Disorder confidence 













 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2iw1 chain A domain 1

3D model

Region: 3 - 371
Aligned: 369
Modelled: 369
Confidence: 100.0%
Identity: 100%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Glycosyl transferases group 1

Phyre2

PDB 3c4v chain B

3D model

Region: 1 - 372
Aligned: 368
Modelled: 372
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: B: PDB Molecule:predicted glycosyltransferases;
PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p.

Phyre2

PDB 2r60 chain A

3D model

Region: 1 - 373
Aligned: 372
Modelled: 373
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:glycosyl transferase, group 1;
PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii

Phyre2

PDB 2bis chain A domain 1

3D model

Region: 1 - 373
Aligned: 371
Modelled: 372
Confidence: 100.0%
Identity: 20%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Glycosyl transferases group 1

Phyre2

PDB 3s29 chain C

3D model

Region: 2 - 369
Aligned: 367
Modelled: 368
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: C: PDB Molecule:sucrose synthase 1;
PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications.

Phyre2

PDB 2jjm chain H

3D model

Region: 1 - 372
Aligned: 356
Modelled: 372
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein;
PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558.

Phyre2

PDB 2gej chain A

3D model

Region: 1 - 374
Aligned: 353
Modelled: 371
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima);
PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man

Phyre2

PDB 3oka chain A

3D model

Region: 2 - 370
Aligned: 363
Modelled: 368
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol
PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form)

Phyre2

PDB 2qzs chain A

3D model

Region: 1 - 370
Aligned: 369
Modelled: 370
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:glycogen synthase;
PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb)

Phyre2

PDB 1rzu chain A

3D model

Region: 1 - 372
Aligned: 369
Modelled: 372
Confidence: 100.0%
Identity: 15%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Glycosyl transferases group 1

Phyre2

PDB 3oy2 chain A

3D model

Region: 1 - 372
Aligned: 357
Modelled: 372
Confidence: 100.0%
Identity: 14%
PDB header:viral protein,transferase
Chain: A: PDB Molecule:glycosyltransferase b736l;
PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a

Phyre2

PDB 2x6r chain A

3D model

Region: 1 - 370
Aligned: 354
Modelled: 370
Confidence: 100.0%
Identity: 17%
PDB header:isomerase
Chain: A: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose

Phyre2

PDB 2xmp chain B

3D model

Region: 1 - 370
Aligned: 354
Modelled: 365
Confidence: 100.0%
Identity: 16%
PDB header:sugar binding protein
Chain: B: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp

Phyre2

PDB 1uqu chain B

3D model

Region: 2 - 373
Aligned: 364
Modelled: 372
Confidence: 100.0%
Identity: 15%
PDB header:synthase
Chain: B: PDB Molecule:alpha, alpha-trehalose-phosphate synthase;
PDBTitle: trehalose-6-phosphate from e. coli bound with udp-glucose.

Phyre2

PDB 1uqt chain A

3D model

Region: 2 - 372
Aligned: 367
Modelled: 371
Confidence: 100.0%
Identity: 13%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Trehalose-6-phosphate synthase, OtsA

Phyre2

PDB 2x0d chain A

3D model

Region: 1 - 338
Aligned: 321
Modelled: 337
Confidence: 100.0%
Identity: 11%
PDB header:transferase
Chain: A: PDB Molecule:wsaf;
PDBTitle: apo structure of wsaf

Phyre2

PDB 3nb0 chain A

3D model

Region: 2 - 372
Aligned: 368
Modelled: 371
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: A: PDB Molecule:glycogen [starch] synthase isoform 2;
PDBTitle: glucose-6-phosphate activated form of yeast glycogen synthase

Phyre2

PDB 2iv3 chain B

3D model

Region: 1 - 374
Aligned: 315
Modelled: 320
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: B: PDB Molecule:glycosyltransferase;
PDBTitle: crystal structure of avigt4, a glycosyltransferase involved2 in avilamycin a biosynthesis

Phyre2

PDB 3o3c chain D

3D model

Region: 2 - 372
Aligned: 369
Modelled: 371
Confidence: 100.0%
Identity: 20%
PDB header:transferase
Chain: D: PDB Molecule:glycogen [starch] synthase isoform 2;
PDBTitle: glycogen synthase basal state udp complex

Phyre2

PDB 1f6d chain A

3D model

Region: 1 - 369
Aligned: 352
Modelled: 361
Confidence: 100.0%
Identity: 13%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: UDP-N-acetylglucosamine 2-epimerase

Phyre2
1

d2iw1a1
2

c3c4vB_
3

c2r60A_
4

d2bisa1
5

c3s29C_
6

c2jjmH_
7

c2gejA_
8

c3okaA_
9

c2qzsA_
10

d1rzua_
11

c3oy2A_
12

c2x6rA_
13

c2xmpB_
14

c1uquB_
15

d1uqta_
16

c2x0dA_
17

c3nb0A_
18

c2iv3B_
19

c3o3cD_
20

d1f6da_
21



22



23



24



25



26



27



28



29



30



31



32



33



34



35



36



37



38



39



40



41



42



43



44



45



46



47



48



49



50



51



52



53



54



55



56



57



58



59



60



61



62



63



64



65



66



67



68



69



70



71



72



73



74



75



76



77



78



79



80



81



82



83



84



85



86



87



88



89



90



91



92



93



94



95



96



97



98



99



100



101



102



103



104



105



106



107



108



109



110



111



112



113



114



115



116



117



118



119



120



121



122



123



124



125



126



127



128



129



130



131



132



133



134



135



136



137



138



139



140



141



142



143



144



145



146



147



148



149



150



151



152



153



154



155



156



157



158



159



160



161



162



163



164



165



166



167



168



169



170



171



172



173



174



175



176



177



178



179



180



181



182



183



184



185



186



187



188



189



190



191



192



193



194



195



196



197



198



199



200



201



202



203



204



205



206



207



208



209



210



211



212



213



214



215



216



217



218



219



220



221



222



223



224



225



226



227



228



229



230



231



232



233



234



235



236



237



238



239



240



241



242



243



244



245



246



247



248



249



250



251



252



253



254



255



256



257



258



259



260



261



262



263



264



265



266



267



268



269



270



271



272



273



274



275



276



277



278



279



280



281



282



283



284



285



286



287



288



289



290



291



292



293



294



295



296



297



298



299



300



301



302



303



304



305



306



307



308



309



310



311



312



313



314



315



316



317



318



319



320



321



322



323



324



325



326



327



328



329



330



331



332



333



334



335



336



337



338



339



340



341



342



343



344



345



346



347



348



349



350



351



352



353



354



355



356



357



358



359



360



361



362



363



364



365



366



367



368



369



370



371



372



373



374



375



376



377



378



379



380



381



382



383



384



385



386



387



388



389



390



391



392



393



394



395



396



397



398



399



400



401



402



403



404



405



406



407



408



409



410



411



412



413



414



415



416



417



418



419



420



421



422



423



424



425



426



427



428



429



430



431



432



433



434



435



436



437



438



439



440



441



442



443



444



445



446



447



448



449



450



451



452



453



454



455



456



457



458



459



460



461



462



463



464



465



466



467



468



469



470



471



472



473



474



475



476



477



478



479



480



481



482



483



484



485



486



487



488



489



490



491



492



493



494



495



496



497



498



499






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2iw1a1



100.0 100 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
2c3c4vB_



100.0 18 PDB header:transferase
Chain: B: PDB Molecule:predicted glycosyltransferases;
PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p.
3c2r60A_



100.0 16 PDB header:transferase
Chain: A: PDB Molecule:glycosyl transferase, group 1;
PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii
4d2bisa1



100.0 20 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
5c3s29C_



100.0 17 PDB header:transferase
Chain: C: PDB Molecule:sucrose synthase 1;
PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications.
6c2jjmH_



100.0 17 PDB header:transferase
Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein;
PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558.
7c2gejA_



100.0 16 PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima);
PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man
8c3okaA_



100.0 19 PDB header:transferase
Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol
PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form)
9c2qzsA_



100.0 18 PDB header:transferase
Chain: A: PDB Molecule:glycogen synthase;
PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb)
10d1rzua_



100.0 15 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
11c3oy2A_



100.0 14 PDB header:viral protein,transferase
Chain: A: PDB Molecule:glycosyltransferase b736l;
PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a
12c2x6rA_



100.0 17 PDB header:isomerase
Chain: A: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose
13c2xmpB_



100.0 16 PDB header:sugar binding protein
Chain: B: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp
14c1uquB_



100.0 15 PDB header:synthase
Chain: B: PDB Molecule:alpha, alpha-trehalose-phosphate synthase;
PDBTitle: trehalose-6-phosphate from e. coli bound with udp-glucose.
15d1uqta_



100.0 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Trehalose-6-phosphate synthase, OtsA
16c2x0dA_



100.0 11 PDB header:transferase
Chain: A: PDB Molecule:wsaf;
PDBTitle: apo structure of wsaf
17c3nb0A_



100.0 21 PDB header:transferase
Chain: A: PDB Molecule:glycogen [starch] synthase isoform 2;
PDBTitle: glucose-6-phosphate activated form of yeast glycogen synthase
18c2iv3B_



100.0 15 PDB header:transferase
Chain: B: PDB Molecule:glycosyltransferase;
PDBTitle: crystal structure of avigt4, a glycosyltransferase involved2 in avilamycin a biosynthesis
19c3o3cD_



100.0 20 PDB header:transferase
Chain: D: PDB Molecule:glycogen [starch] synthase isoform 2;
PDBTitle: glycogen synthase basal state udp complex
20d1f6da_



100.0 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
21c3dzcA_



not modelled 100.0 15 PDB header:isomerase
Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae.
22c3ot5D_



not modelled 100.0 12 PDB header:isomerase
Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes
23d1v4va_



not modelled 100.0 16 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
24c3rhzB_



not modelled 100.0 11 PDB header:transferase
Chain: B: PDB Molecule:nucleotide sugar synthetase-like protein;
PDBTitle: structure and functional analysis of a new subfamily of2 glycosyltransferases required for glycosylation of serine-rich3 streptococcal adhesions
25c2xcuC_



not modelled 100.0 17 PDB header:transferase
Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase;
PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp
26c2q6vA_



not modelled 100.0 11 PDB header:transferase
Chain: A: PDB Molecule:glucuronosyltransferase gumk;
PDBTitle: crystal structure of gumk in complex with udp
27d1o6ca_



not modelled 99.9 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
28d1f0ka_



not modelled 99.9 16 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Peptidoglycan biosynthesis glycosyltransferase MurG
29c3ia7A_



not modelled 99.9 13 PDB header:transferase
Chain: A: PDB Molecule:calg4;
PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase
30c3iaaB_



not modelled 99.9 12 PDB header:transferase
Chain: B: PDB Molecule:calg2;
PDBTitle: crystal structure of calg2, calicheamicin glycosyltransferase, tdp2 bound form
31c3othB_



not modelled 99.9 13 PDB header:transferase/antibiotic
Chain: B: PDB Molecule:calg1;
PDBTitle: crystal structure of calg1, calicheamicin glycostyltransferase, tdp2 and calicheamicin alpha3i bound form
32c2p6pB_



not modelled 99.9 14 PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase;
PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2
33c2iyaB_



not modelled 99.9 12 PDB header:transferase
Chain: B: PDB Molecule:oleandomycin glycosyltransferase;
PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering
34c2iyfA_



not modelled 99.9 10 PDB header:transferase
Chain: A: PDB Molecule:oleandomycin glycosyltransferase;
PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering
35c2vsnB_



not modelled 99.9 13 PDB header:transferase
Chain: B: PDB Molecule:xcogt;
PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation
36d2f9fa1



not modelled 99.9 15 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
37d2bfwa1



not modelled 99.8 23 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
38c3qhpB_



not modelled 99.8 24 PDB header:transferase
Chain: B: PDB Molecule:type 1 capsular polysaccharide biosynthesis protein j
PDBTitle: crystal structure of the catalytic domain of cholesterol-alpha-2 glucosyltransferase from helicobacter pylori
39c3d0qB_



not modelled 99.8 14 PDB header:transferase
Chain: B: PDB Molecule:protein calg3;
PDBTitle: crystal structure of calg3 from micromonospora echinospora determined2 in space group i222
40d1iira_



not modelled 99.7 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Gtf glycosyltransferase
41c3pe3D_



not modelled 99.7 12 PDB header:transferase
Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n-
PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate
42d1pn3a_



not modelled 99.7 15 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Gtf glycosyltransferase
43d1rrva_



not modelled 99.6 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Gtf glycosyltransferase
44d2acva1



not modelled 99.5 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
45c3hbjA_



not modelled 99.3 12 PDB header:transferase
Chain: A: PDB Molecule:flavonoid 3-o-glucosyltransferase;
PDBTitle: structure of ugt78g1 complexed with udp
46d2pq6a1



not modelled 99.3 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
47d2c1xa1



not modelled 99.0 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
48c3l7mC_



not modelled 98.9 11 PDB header:structural protein
Chain: C: PDB Molecule:teichoic acid biosynthesis protein f;
PDBTitle: structure of the wall teichoic acid polymerase tagf, h548a
49d2vcha1



not modelled 98.7 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
50c3hbmA_



not modelled 98.6 12 PDB header:hydrolase
Chain: A: PDB Molecule:udp-sugar hydrolase;
PDBTitle: crystal structure of pseg from campylobacter jejuni
51c3q3hA_



not modelled 98.4 11 PDB header:transferase
Chain: A: PDB Molecule:hmw1c-like glycosyltransferase;
PDBTitle: crystal structure of the actinobacillus pleuropneumoniae hmw1c2 glycosyltransferase in complex with udp-glc
52c2c4mA_



not modelled 97.8 15 PDB header:transferase
Chain: A: PDB Molecule:glycogen phosphorylase;
PDBTitle: starch phosphorylase: structural studies explain oxyanion-2 dependent kinetic stability and regulatory control.
53c3ddsB_



not modelled 97.6 18 PDB header:transferase
Chain: B: PDB Molecule:glycogen phosphorylase, liver form;
PDBTitle: crystal structure of glycogen phosphorylase complexed with an2 anthranilimide based inhibitor gsk261
54c2h1fB_



not modelled 97.6 9 PDB header:transferase
Chain: B: PDB Molecule:lipopolysaccharide heptosyltransferase-1;
PDBTitle: e. coli heptosyltransferase waac with adp
55c2o6lA_



not modelled 97.6 11 PDB header:transferase
Chain: A: PDB Molecule:udp-glucuronosyltransferase 2b7;
PDBTitle: crystal structure of the udp-glucuronic acid binding domain2 of the human drug metabolizing udp-glucuronosyltransferase3 2b7
56d2atia1



not modelled 97.5 16 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
57d1ygpa_



not modelled 97.5 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
58d1l5wa_



not modelled 97.4 16 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
59d2gj4a1



not modelled 97.3 16 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
60d1pswa_



not modelled 97.0 8 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:ADP-heptose LPS heptosyltransferase II
61c3tovB_



not modelled 96.1 10 PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase family 9;
PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008
62c2jzcA_



not modelled 95.4 17 PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine transferase subunit
PDBTitle: nmr solution structure of alg13: the sugar donor subunit of2 a yeast n-acetylglucosamine transferase. northeast3 structural genomics consortium target yg1
63d1s3ia2



not modelled 93.8 13 Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
64d1jaya_



not modelled 93.5 33 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
65c1gshA_



not modelled 92.9 5 PDB header:glutathione biosynthesis ligase
Chain: A: PDB Molecule:glutathione biosynthetic ligase;
PDBTitle: structure of escherichia coli glutathione synthetase at ph 7.5
66d1ydga_



not modelled 92.9 20 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
67c2pk3B_



not modelled 92.8 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:gdp-6-deoxy-d-lyxo-4-hexulose reductase;
PDBTitle: crystal structure of a gdp-4-keto-6-deoxy-d-mannose reductase
68c1y6gB_



not modelled 92.7 14 PDB header:transferase/dna
Chain: B: PDB Molecule:dna alpha-glucosyltransferase;
PDBTitle: alpha-glucosyltransferase in complex with udp and a 13_mer2 dna containing a hmu base at 2.8 a resolution
69d1gsaa1



not modelled 92.5 5 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:Prokaryotic glutathione synthetase, N-terminal domain
70d2bw0a2



not modelled 92.4 13 Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
71d1udca_



not modelled 92.3 17 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
72d1vl0a_



not modelled 92.0 12 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
73c2ixdB_



not modelled 91.8 8 PDB header:hydrolase
Chain: B: PDB Molecule:lmbe-related protein;
PDBTitle: crystal structure of the putative deacetylase bc1534 from2 bacilus cereus
74d1kewa_



not modelled 91.5 9 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
75d2d1pa1



not modelled 91.4 19 Fold:DsrEFH-like
Superfamily:DsrEFH-like
Family:DsrEF-like
76c2ggsB_



not modelled 91.3 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:273aa long hypothetical dtdp-4-dehydrorhamnose
PDBTitle: crystal structure of hypothetical dtdp-4-dehydrorhamnose2 reductase from sulfolobus tokodaii
77c3m2pD_



not modelled 91.3 17 PDB header:isomerase
Chain: D: PDB Molecule:udp-n-acetylglucosamine 4-epimerase;
PDBTitle: the crystal structure of udp-n-acetylglucosamine 4-epimerase2 from bacillus cereus
78d2hy5a1



not modelled 91.2 19 Fold:DsrEFH-like
Superfamily:DsrEFH-like
Family:DsrEF-like
79c1s3iA_



not modelled 91.2 14 PDB header:hydrolase, oxidoreductase
Chain: A: PDB Molecule:10-formyltetrahydrofolate dehydrogenase;
PDBTitle: crystal structure of the n terminal hydrolase domain of 10-2 formyltetrahydrofolate dehydrogenase
80d1uana_



not modelled 90.8 8 Fold:LmbE-like
Superfamily:LmbE-like
Family:LmbE-like
81c3icpA_



not modelled 90.4 18 PDB header:isomerase
Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase;
PDBTitle: crystal structure of udp-galactose 4-epimerase
82d1fjha_



not modelled 90.3 14 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
83c2ofpB_



not modelled 90.1 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:ketopantoate reductase;
PDBTitle: crystal structure of escherichia coli ketopantoate2 reductase in a ternary complex with nadp+ and pantoate
84c2x4gA_



not modelled 90.1 19 PDB header:isomerase
Chain: A: PDB Molecule:nucleoside-diphosphate-sugar epimerase;
PDBTitle: crystal structure of pa4631, a nucleoside-diphosphate-sugar2 epimerase from pseudomonas aeruginosa
85c2p5uC_



not modelled 89.8 22 PDB header:isomerase
Chain: C: PDB Molecule:udp-glucose 4-epimerase;
PDBTitle: crystal structure of thermus thermophilus hb8 udp-glucose 4-2 epimerase complex with nad
86d1n2sa_



not modelled 89.8 20 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
87c2pzlB_



not modelled 89.7 19 PDB header:sugar binding protein
Chain: B: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase;
PDBTitle: crystal structure of the bordetella bronchiseptica enzyme2 wbmg in complex with nad and udp
88d1txga2



not modelled 89.5 24 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
89d2f1ka2



not modelled 89.4 22 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
90d1fmta2



not modelled 89.3 12 Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
91d2c5aa1



not modelled 89.1 15 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
92c3l4bG_



not modelled 88.7 22 PDB header:transport protein
Chain: G: PDB Molecule:trka k+ channel protien tm1088b;
PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima
93c3sc6F_



not modelled 88.1 10 PDB header:oxidoreductase
Chain: F: PDB Molecule:dtdp-4-dehydrorhamnose reductase;
PDBTitle: 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose2 reductase (rfbd) from bacillus anthracis str. ames in complex with3 nadp
94d1ks9a2



not modelled 87.9 18 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
95c1ks9A_



not modelled 87.9 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:2-dehydropantoate 2-reductase;
PDBTitle: ketopantoate reductase from escherichia coli
96c3oh8A_



not modelled 87.2 17 PDB header:isomerase
Chain: A: PDB Molecule:nucleoside-diphosphate sugar epimerase (sula family);
PDBTitle: crystal structure of the nucleoside-diphosphate sugar epimerase from2 corynebacterium glutamicum. northeast structural genomics consortium3 target cgr91
97d1mv8a2



not modelled 86.8 38 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
98c2f1kD_



not modelled 86.7 22 PDB header:oxidoreductase
Chain: D: PDB Molecule:prephenate dehydrogenase;
PDBTitle: crystal structure of synechocystis arogenate dehydrogenase
99d2blna2



not modelled 86.3 14 Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
100c2q1wC_



not modelled 86.0 24 PDB header:sugar binding protein
Chain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase;
PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+
101d1bxka_



not modelled 86.0 11 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
102c1yrwA_



not modelled 85.7 10 PDB header:transferase
Chain: A: PDB Molecule:protein arna;
PDBTitle: crystal structure of e.coli arna transformylase domain
103c3tqqA_



not modelled 84.9 17 PDB header:transferase
Chain: A: PDB Molecule:methionyl-trna formyltransferase;
PDBTitle: structure of the methionyl-trna formyltransferase (fmt) from coxiella2 burnetii
104c1n7gB_



not modelled 84.8 11 PDB header:lyase
Chain: B: PDB Molecule:gdp-d-mannose-4,6-dehydratase;
PDBTitle: crystal structure of the gdp-mannose 4,6-dehydratase2 ternary complex with nadph and gdp-rhamnose.
105c3dojA_



not modelled 84.6 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:dehydrogenase-like protein;
PDBTitle: structure of glyoxylate reductase 1 from arabidopsis2 (atglyr1)
106c1z7eC_



not modelled 84.5 11 PDB header:hydrolase
Chain: C: PDB Molecule:protein arna;
PDBTitle: crystal structure of full length arna
107c3g17H_



not modelled 84.5 18 PDB header:structural genomics, unknown function
Chain: H: PDB Molecule:similar to 2-dehydropantoate 2-reductase;
PDBTitle: structure of putative 2-dehydropantoate 2-reductase from2 staphylococcus aureus
108c3kjgB_



not modelled 84.3 13 PDB header:hydrolase, metal binding protein
Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase complex, accessory
PDBTitle: adp-bound state of cooc1
109c1z45A_



not modelled 84.2 12 PDB header:isomerase
Chain: A: PDB Molecule:gal10 bifunctional protein;
PDBTitle: crystal structure of the gal10 fusion protein galactose2 mutarotase/udp-galactose 4-epimerase from saccharomyces3 cerevisiae complexed with nad, udp-glucose, and galactose
110c3l77A_



not modelled 84.1 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:short-chain alcohol dehydrogenase;
PDBTitle: x-ray structure alcohol dehydrogenase from archaeon thermococcus2 sibiricus complexed with 5-hydroxy-nadp
111c3g0oA_



not modelled 84.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:3-hydroxyisobutyrate dehydrogenase;
PDBTitle: crystal structure of 3-hydroxyisobutyrate dehydrogenase2 (ygbj) from salmonella typhimurium
112d1pgja2



not modelled 83.8 28 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
113d2afhe1



not modelled 83.8 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
114c1txgA_



not modelled 83.3 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase [nad(p)+];
PDBTitle: structure of glycerol-3-phosphate dehydrogenase from archaeoglobus2 fulgidus
115c2gf2B_



not modelled 83.2 24 PDB header:oxidoreductase
Chain: B: PDB Molecule:3-hydroxyisobutyrate dehydrogenase;
PDBTitle: crystal structure of human hydroxyisobutyrate dehydrogenase
116c1fmtA_



not modelled 83.1 13 PDB header:formyltransferase
Chain: A: PDB Molecule:methionyl-trna fmet formyltransferase;
PDBTitle: methionyl-trnafmet formyltransferase from escherichia coli
117d1e7wa_



not modelled 82.8 26 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
118c2qhxB_



not modelled 82.7 26 PDB header:oxidoreductase
Chain: B: PDB Molecule:pteridine reductase 1;
PDBTitle: structure of pteridine reductase from leishmania major2 complexed with a ligand
119c2hunB_



not modelled 82.5 14 PDB header:lyase
Chain: B: PDB Molecule:336aa long hypothetical dtdp-glucose 4,6-dehydratase;
PDBTitle: crystal structure of hypothetical protein ph0414 from pyrococcus2 horikoshii ot3
120d2blla1



not modelled 82.4 17 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0