Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	Y	D	T	S	E	L	C	D	I	Y	Q	E	D	V	N	V	V	E	P	L	F	S	N	F	G	G	R	A	S	F	G	G	Q	I	I	T	V	K	C	F	E	D	N	G	L	L	Y	D	L	L	E	Q	N	G	R	G	R	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?											?								?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	V	V	D	G	G	G	S	V	R	R	A	L	V	D	A	E	L	A	R	L	A	V	Q	N	E	W	E	G	L	V	I	Y	G	A	V	R	Q	V	D	D	L	E	E	L	D	I	G	I	Q	A	M	A	A	I	P	V	G	A	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Sequence		G	E	G	I	G	E	S	D	V	R	V	N	F	G	G	V	T	F	F	S	G	D	H	L	Y	A	D	N	T	G	I	I	L	S	E	D	P	L	D	I	E
Secondary structure
SS confidence
Disorder																																					?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1q5x chain A Region: 2 - 161 Aligned: 160 Modelled: 160 Confidence: 100.0% Identity: 100% Fold: The "swivelling" beta/beta/alpha domain Superfamily: RraA-like Family: RraA-like Phyre2 PDB 3c8o chain B Region: 1 - 160 Aligned: 160 Modelled: 160 Confidence: 100.0% Identity: 55% PDB header:hydrolase regulator Chain: B: PDB Molecule:regulator of ribonuclease activity a; PDBTitle: the crystal structure of rraa from pao1 Phyre2 PDB 2pcn chain A Region: 3 - 161 Aligned: 159 Modelled: 159 Confidence: 100.0% Identity: 38% PDB header:transferase Chain: A: PDB Molecule:s-adenosylmethionine:2-demethylmenaquinone PDBTitle: crystal structure of s-adenosylmethionine: 2-dimethylmenaquinone2 methyltransferase (gk_1813) from geobacillus kaustophilus hta426 Phyre2 PDB 1vi4 chain A Region: 1 - 160 Aligned: 160 Modelled: 159 Confidence: 100.0% Identity: 44% Fold: The "swivelling" beta/beta/alpha domain Superfamily: RraA-like Family: RraA-like Phyre2 PDB 1j3l chain A Region: 1 - 159 Aligned: 158 Modelled: 159 Confidence: 100.0% Identity: 44% Fold: The "swivelling" beta/beta/alpha domain Superfamily: RraA-like Family: RraA-like Phyre2 PDB 1nxj chain A Region: 3 - 154 Aligned: 152 Modelled: 152 Confidence: 100.0% Identity: 45% Fold: The "swivelling" beta/beta/alpha domain Superfamily: RraA-like Family: RraA-like Phyre2 PDB 1nxj chain A Region: 3 - 154 Aligned: 152 Modelled: 152 Confidence: 100.0% Identity: 45% PDB header:unknown function Chain: A: PDB Molecule:probable s-adenosylmethionine:2- PDBTitle: structure of rv3853 from mycobacterium tuberculosis Phyre2 PDB 3noj chain A Region: 2 - 161 Aligned: 159 Modelled: 160 Confidence: 100.0% Identity: 20% PDB header:lyase Chain: A: PDB Molecule:4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate PDBTitle: the structure of hmg/cha aldolase from the protocatechuate degradation2 pathway of pseudomonas putida Phyre2 PDB 3k4i chain C Region: 2 - 161 Aligned: 159 Modelled: 160 Confidence: 100.0% Identity: 19% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein pspto_3204 from2 pseudomonas syringae pv. tomato str. dc3000 Phyre2 PDB 2c5q chain E Region: 1 - 159 Aligned: 159 Modelled: 159 Confidence: 100.0% Identity: 19% PDB header:structural genomics,unknown function Chain: E: PDB Molecule:rraa-like protein yer010c; PDBTitle: crystal structure of yeast yer010cp Phyre2 PDB 1vbg chain A domain 2 Region: 28 - 154 Aligned: 105 Modelled: 117 Confidence: 76.9% Identity: 15% Fold: The "swivelling" beta/beta/alpha domain Superfamily: Phosphohistidine domain Family: Pyruvate phosphate dikinase, central domain Phyre2 PDB 1kbl chain A domain 2 Region: 28 - 154 Aligned: 105 Modelled: 117 Confidence: 75.0% Identity: 20% Fold: The "swivelling" beta/beta/alpha domain Superfamily: Phosphohistidine domain Family: Pyruvate phosphate dikinase, central domain Phyre2 PDB 2gp4 chain A domain 1 Region: 30 - 96 Aligned: 64 Modelled: 66 Confidence: 60.6% Identity: 20% Fold: The "swivelling" beta/beta/alpha domain Superfamily: LeuD/IlvD-like Family: IlvD/EDD C-terminal domain-like Phyre2 PDB 1f5v chain A Region: 70 - 108 Aligned: 39 Modelled: 39 Confidence: 55.4% Identity: 18% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 1e8c chain A domain 2 Region: 47 - 76 Aligned: 30 Modelled: 30 Confidence: 55.2% Identity: 20% Fold: MurD-like peptide ligases, peptide-binding domain Superfamily: MurD-like peptide ligases, peptide-binding domain Family: MurCDEF C-terminal domain Phyre2 PDB 3n2s chain D Region: 70 - 108 Aligned: 39 Modelled: 39 Confidence: 53.4% Identity: 21% PDB header:oxidoreductase Chain: D: PDB Molecule:nadph-dependent nitro/flavin reductase; PDBTitle: structure of nfra1 nitroreductase from b. subtilis Phyre2 PDB 1zch chain A domain 1 Region: 70 - 108 Aligned: 39 Modelled: 39 Confidence: 49.8% Identity: 15% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 2gp4 chain A Region: 30 - 96 Aligned: 65 Modelled: 66 Confidence: 47.1% Identity: 18% PDB header:lyase Chain: A: PDB Molecule:6-phosphogluconate dehydratase; PDBTitle: structure of [fes]cluster-free apo form of 6-phosphogluconate2 dehydratase from shewanella oneidensis Phyre2 PDB 3eof chain B Region: 70 - 108 Aligned: 39 Modelled: 39 Confidence: 43.7% Identity: 13% PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase (yp_213212.1) from2 bacteroides fragilis nctc 9343 at 1.99 a resolution Phyre2 PDB 1bkj chain A Region: 70 - 108 Aligned: 39 Modelled: 39 Confidence: 42.7% Identity: 18% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 1 d1q5xa_ 2 c3c8oB_ 3 c2pcnA_ 4 d1vi4a_ 5 d1j3la_ 6 d1nxja_ 7 c1nxjA_ 8 c3nojA_ 9 c3k4iC_ 10 c2c5qE_ 11 d1vbga2 12 d1kbla2 13 d2gp4a1 14 d1f5va_ 15 d1e8ca2 16 c3n2sD_ 17 d1zcha1 18 c2gp4A_ 19 c3eofB_ 20 d1bkja_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1q5xa_ 100.0 100 Fold:The "swivelling" beta/beta/alpha domain Superfamily:RraA-like Family:RraA-like 2 c3c8oB_ 100.0 55 PDB header:hydrolase regulator Chain: B: PDB Molecule:regulator of ribonuclease activity a; PDBTitle: the crystal structure of rraa from pao1 3 c2pcnA_ 100.0 38 PDB header:transferase Chain: A: PDB Molecule:s-adenosylmethionine:2-demethylmenaquinone PDBTitle: crystal structure of s-adenosylmethionine: 2-dimethylmenaquinone2 methyltransferase (gk_1813) from geobacillus kaustophilus hta426 4 d1vi4a_ 100.0 44 Fold:The "swivelling" beta/beta/alpha domain Superfamily:RraA-like Family:RraA-like 5 d1j3la_ 100.0 44 Fold:The "swivelling" beta/beta/alpha domain Superfamily:RraA-like Family:RraA-like 6 d1nxja_ 100.0 45 Fold:The "swivelling" beta/beta/alpha domain Superfamily:RraA-like Family:RraA-like 7 c1nxjA_ 100.0 45 PDB header:unknown function Chain: A: PDB Molecule:probable s-adenosylmethionine:2- PDBTitle: structure of rv3853 from mycobacterium tuberculosis 8 c3nojA_ 100.0 20 PDB header:lyase Chain: A: PDB Molecule:4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate PDBTitle: the structure of hmg/cha aldolase from the protocatechuate degradation2 pathway of pseudomonas putida 9 c3k4iC_ 100.0 19 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein pspto_3204 from2 pseudomonas syringae pv. tomato str. dc3000 10 c2c5qE_ 100.0 19 PDB header:structural genomics,unknown function Chain: E: PDB Molecule:rraa-like protein yer010c; PDBTitle: crystal structure of yeast yer010cp 11 d1vbga2 76.9 15 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 12 d1kbla2 75.0 20 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 13 d2gp4a1 60.6 20 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:IlvD/EDD C-terminal domain-like 14 d1f5va_ 55.4 18 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 15 d1e8ca2 55.2 20 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 16 c3n2sD_ 53.4 21 PDB header:oxidoreductase Chain: D: PDB Molecule:nadph-dependent nitro/flavin reductase; PDBTitle: structure of nfra1 nitroreductase from b. subtilis 17 d1zcha1 49.8 15 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 18 c2gp4A_ 47.1 18 PDB header:lyase Chain: A: PDB Molecule:6-phosphogluconate dehydratase; PDBTitle: structure of [fes]cluster-free apo form of 6-phosphogluconate2 dehydratase from shewanella oneidensis 19 c3eofB_ 43.7 13 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase (yp_213212.1) from2 bacteroides fragilis nctc 9343 at 1.99 a resolution 20 d1bkja_ 42.7 18 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 21 c1vfgB_ not modelled 42.6 17 PDB header:transferase/rna Chain: B: PDB Molecule:poly a polymerase; PDBTitle: crystal structure of trna nucleotidyltransferase complexed2 with a primer trna and an incoming atp analog 22 c1ou5A_ not modelled 40.9 36 PDB header:translation, transferase Chain: A: PDB Molecule:trna cca-adding enzyme; PDBTitle: crystal structure of human cca-adding enzyme 23 d1vfga2 not modelled 37.7 17 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Poly A polymerase head domain-like 24 d1ou5a2 not modelled 33.3 36 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Poly A polymerase head domain-like 25 c1dbgA_ not modelled 33.1 19 PDB header:lyase Chain: A: PDB Molecule:chondroitinase b; PDBTitle: crystal structure of chondroitinase b 26 c2vpiA_ not modelled 31.2 16 PDB header:ligase Chain: A: PDB Molecule:gmp synthase; PDBTitle: human gmp synthetase - glutaminase domain 27 d1ofla_ not modelled 30.1 22 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Chondroitinase B 28 c1e8cB_ not modelled 27.4 20 PDB header:ligase Chain: B: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamate--2,6- PDBTitle: structure of mure the udp-n-acetylmuramyl tripeptide2 synthetase from e. coli 29 d1miwa2 not modelled 24.8 23 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Poly A polymerase head domain-like 30 c3mvnA_ not modelled 23.7 14 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamayl-medo- PDBTitle: crystal structure of a domain from a putative udp-n-acetylmuramate:l-2 alanyl-gamma-d-glutamayl-medo-diaminopimelate ligase from haemophilus3 ducreyi 35000hp 31 c3h37B_ not modelled 21.7 22 PDB header:transferase Chain: B: PDB Molecule:trna nucleotidyl transferase-related protein; PDBTitle: the structure of cca-adding enzyme apo form i 32 c3aqnA_ not modelled 19.5 18 PDB header:transferase Chain: A: PDB Molecule:poly(a) polymerase; PDBTitle: complex structure of bacterial protein (apo form ii) 33 d1thfd_ not modelled 18.7 12 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 34 c3l7oB_ not modelled 18.4 14 PDB header:isomerase Chain: B: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159 35 c3k6hB_ not modelled 18.1 5 PDB header:oxidoreductase Chain: B: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of a nitroreductase family protein from2 agrobacterium tumefaciens str. c58 36 c3tbiB_ not modelled 16.6 33 PDB header:transcription Chain: B: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of t4 gp33 bound to e. coli rnap beta-flap domain 37 c2pjmA_ not modelled 16.4 19 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii 38 c3bm2B_ not modelled 16.4 15 PDB header:oxidoreductase Chain: B: PDB Molecule:protein ydja; PDBTitle: crystal structure of a minimal nitroreductase ydja from escherichia2 coli k12 with and without fmn cofactor 39 c1fdvA_ not modelled 16.4 19 PDB header:dehydrogenase Chain: A: PDB Molecule:17-beta-hydroxysteroid dehydrogenase; PDBTitle: human 17-beta-hydroxysteroid-dehydrogenase type 1 mutant2 h221l complexed with nad+ 40 c2wzvB_ not modelled 15.3 8 PDB header:oxidoreductase Chain: B: PDB Molecule:nfnb protein; PDBTitle: crystal structure of the fmn-dependent nitroreductase nfnb2 from mycobacterium smegmatis 41 d1uj4a1 not modelled 14.3 15 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 42 c1miyB_ not modelled 12.5 25 PDB header:translation, transferase Chain: B: PDB Molecule:trna cca-adding enzyme; PDBTitle: crystal structure of bacillus stearothermophilus cca-adding enzyme in2 complex with ctp 43 d1jtva_ not modelled 11.1 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 44 d1fcqa_ not modelled 10.3 16 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Bee venom hyaluronidase 45 c3cioA_ not modelled 9.7 35 PDB header:signaling protein, transferase Chain: A: PDB Molecule:tyrosine-protein kinase etk; PDBTitle: the kinase domain of escherichia coli tyrosine kinase etk 46 c3bemA_ not modelled 9.6 16 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nad(p)h nitroreductase ydfn; PDBTitle: crystal structure of putative nitroreductase ydfn (2632848) from2 bacillus subtilis at 1.65 a resolution 47 c2atmA_ not modelled 9.6 32 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronoglucosaminidase; PDBTitle: crystal structure of the recombinant allergen ves v 2 48 c1skoA_ not modelled 9.5 17 PDB header:signaling protein Chain: A: PDB Molecule:mitogen-activated protein kinase kinase 1 PDBTitle: mp1-p14 complex 49 c1fcuA_ not modelled 9.4 16 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronoglucosaminidase; PDBTitle: crystal structure (trigonal) of bee venom hyaluronidase 50 c3emkA_ not modelled 9.3 24 PDB header:oxidoreductase Chain: A: PDB Molecule:glucose/ribitol dehydrogenase; PDBTitle: 2.5a crystal structure of glucose/ribitol dehydrogenase2 from brucella melitensis 51 d1h6za2 not modelled 9.3 15 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 52 c3mjjD_ not modelled 9.3 36 PDB header:hydrolase Chain: D: PDB Molecule:predicted acetamidase/formamidase; PDBTitle: crystal structure analysis of a recombinant predicted2 acetamidase/formamidase from the thermophile thermoanaerobacter3 tengcongensis 53 d1tvca1 not modelled 9.1 20 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 54 d1ka9f_ not modelled 9.1 14 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 55 c1vdzA_ not modelled 8.4 12 PDB header:hydrolase Chain: A: PDB Molecule:a-type atpase subunit a; PDBTitle: crystal structure of a-type atpase catalytic subunit a from2 pyrococcus horikoshii ot3 56 c2pe4A_ not modelled 8.4 11 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronidase-1; PDBTitle: structure of human hyaluronidase 1, a hyaluronan hydrolyzing enzyme2 involved in tumor growth and angiogenesis 57 d2f4la1 not modelled 8.4 21 Fold:CUB-like Superfamily:Acetamidase/Formamidase-like Family:Acetamidase/Formamidase-like 58 d1i1qb_ not modelled 8.4 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 59 c2xrfA_ not modelled 8.3 25 PDB header:transferase Chain: A: PDB Molecule:uridine phosphorylase 2; PDBTitle: crystal structure of human uridine phosphorylase 2 60 c3eo7A_ not modelled 8.3 24 PDB header:flavoprotein Chain: A: PDB Molecule:putative nitroreductase; PDBTitle: crystal structure of a putative nitroreductase (ava_2154) from2 anabaena variabilis atcc 29413 at 1.80 a resolution 61 c3pbiA_ not modelled 8.2 22 PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution 62 d1h5ya_ not modelled 8.2 16 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 63 c3hj9A_ not modelled 8.2 8 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of a putative nitroreductase (reut_a1228) from2 ralstonia eutropha jmp134 at 2.00 a resolution 64 c3b9tD_ not modelled 7.8 29 PDB header:hydrolase Chain: D: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of predicted acetamidase/formamidase (yp_546212.1)2 from methylobacillus flagellatus kt at 1.58 a resolution 65 c2xivA_ not modelled 7.7 26 PDB header:structural protein Chain: A: PDB Molecule:hypothetical invasion protein; PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis 66 c2r01A_ not modelled 7.6 16 PDB header:oxidoreductase Chain: A: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of a putative fmn-dependent nitroreductase (ct0345)2 from chlorobium tepidum tls at 1.15 a resolution 67 d2fsua1 not modelled 7.0 10 Fold:PLP-dependent transferase-like Superfamily:PhnH-like Family:PhnH-like 68 c2fsuA_ not modelled 7.0 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein phnh; PDBTitle: crystal structure of the phnh protein from escherichia coli 69 d1eara1 not modelled 7.0 30 Fold:Urease metallochaperone UreE, N-terminal domain Superfamily:Urease metallochaperone UreE, N-terminal domain Family:Urease metallochaperone UreE, N-terminal domain 70 d1j5ya1 not modelled 6.8 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Biotin repressor-like 71 c2i7hE_ not modelled 6.7 10 PDB header:oxidoreductase Chain: E: PDB Molecule:nitroreductase-like family protein; PDBTitle: crystal structure of the nitroreductase-like family protein from2 bacillus cereus 72 c2ii1A_ not modelled 6.6 29 PDB header:hydrolase Chain: A: PDB Molecule:acetamidase; PDBTitle: crystal structure of acetamidase (10172637) from bacillus halodurans2 at 1.95 a resolution 73 c3gt2A_ not modelled 6.6 17 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c 74 c3rkuC_ not modelled 6.5 18 PDB header:oxidoreductase Chain: C: PDB Molecule:oxidoreductase ymr226c; PDBTitle: substrate fingerprint and the structure of nadp+ dependent serine2 dehydrogenase from saccharomyces cerevisiae complexed with nadp+ 75 c1vbhA_ not modelled 6.5 16 PDB header:transferase Chain: A: PDB Molecule:pyruvate,orthophosphate dikinase; PDBTitle: pyruvate phosphate dikinase with bound mg-pep from maize 76 d2cs7a1 not modelled 6.3 21 Fold:IL8-like Superfamily:PhtA domain-like Family:PhtA domain-like 77 d1gph12 not modelled 6.1 16 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 78 c1y43B_ not modelled 5.9 26 PDB header:hydrolase Chain: B: PDB Molecule:aspergillopepsin ii heavy chain; PDBTitle: crystal structure of aspergilloglutamic peptidase from2 aspergillus niger 79 c2kytA_ not modelled 5.7 9 PDB header:hydrolase Chain: A: PDB Molecule:group xvi phospholipase a2; PDBTitle: solution struture of the h-rev107 n-terminal domain 80 c3k81D_ not modelled 5.7 25 PDB header:immune system, rna binding protein Chain: D: PDB Molecule:mp18 rna editing complex protein; PDBTitle: structure of the central interaction protein from the trypanosoma2 brucei editosome in complex with single domain antibodies 81 d1vzwa1 not modelled 5.7 17 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 82 d1p3da2 not modelled 5.5 27 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 83 c3ny0D_ not modelled 5.5 20 PDB header:metal binding protein Chain: D: PDB Molecule:urease accessory protein uree; PDBTitle: crystal structure of uree from helicobacter pylori (ni2+ bound form) 84 c2wknE_ not modelled 5.3 36 PDB header:hydrolase Chain: E: PDB Molecule:formamidase; PDBTitle: gamma lactamase from delftia acidovorans 85 d1vkya_ not modelled 5.2 18 Fold:QueA-like Superfamily:QueA-like Family:QueA-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0