PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3emkA_

Fold library id	PDB Header	Molecule	Title
c3emkA_	PDB header: oxidoreductase	Chain: A: PDB Molecule: glucose/ribitol dehydrogenase;	PDBTitle: 2.5a crystal structure of glucose/ribitol dehydrogenase2 from brucella melitensis

Links to external resources
Added to library: Tue Mar 16 13:43:16 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S M F D L T G R K A L V T G A T G G L G E A I A R A L H A Q G A I V G L H G T R E E K L K E L A A E L G E R I F V F P A N L S D R E A V K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
T T T T S T T
S
S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L G Q K A E E E M G G V D I L V N N A G I T R D G L F V R M S D E D W D A V L T V N L T S V F N L T R E L T H P M M R R R N G R I I N I T S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
G G G
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I V G V T G N P G Q A N Y C A S K A G L I G F S K S L A Q E I A S R N V T V N C I A P G F I E S A M E K Q K D A I M G N I P M K R M G V G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
G G G T
S B S S
T T
T T
S
B

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 .

Sequence D I A A A V V Y L A S D E A A Y V T G Q T L H V N G G M A M I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S G G G T T
S
S T T S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	M	F	D	L	T	G	R	K	A	L	V	T	G	A	T	G	G	L	G	E	A	I	A	R	A	L	H	A	Q	G	A	I	V	G	L	H	G	T	R	E	E	K	L	K	E	L	A	A	E	L	G	E	R	I	F	V	F	P	A	N	L	S	D	R	E	A	V	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T			T	T						T	T	T	T	S													T	T								S														S	S								T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	G	Q	K	A	E	E	E	M	G	G	V	D	I	L	V	N	N	A	G	I	T	R	D	G	L	F	V	R	M	S	D	E	D	W	D	A	V	L	T	V	N	L	T	S	V	F	N	L	T	R	E	L	T	H	P	M	M	R	R	R	N	G	R	I	I	N	I	T	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	S																G	G	G														T																	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	V	G	V	T	G	N	P	G	Q	A	N	Y	C	A	S	K	A	G	L	I	G	F	S	K	S	L	A	Q	E	I	A	S	R	N	V	T	V	N	C	I	A	P	G	F	I	E	S	A	M	E	K	Q	K	D	A	I	M	G	N	I	P	M	K	R	M	G	V	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T																							G	G	G	T										S	B	S	S											T	T		T	T		S		B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Sequence	D	I	A	A	A	V	V	Y	L	A	S	D	E	A	A	Y	V	T	G	Q	T	L	H	V	N	G	G	M	A	M	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	G	G	G	T	T			S						S	T	T	S	S