Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP31337
DateTue Jul 17 17:05:10 BST 2012
Unique Job ID8de979157a004c5f

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2qlcC_
Top template information
PDB header:dna binding protein
Chain: C: PDB Molecule:dna repair protein radc homolog;
PDBTitle: the crystal structure of dna repair protein radc from chlorobium2 tepidum tls
Confidence and coverage
Confidence:100.0% Coverage: 57%
124 residues ( 57% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
212 residues ( 97%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIK
Secondary structure 
SS confidence 
Disorder  ??
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  VKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLL
Secondary structure 
SS confidence 
Disorder 
?
???
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  NSKNVVIKETCVFKGTLNSSIVHPREIFSIAVRENANAIIAVHNHPSGDVTPSQEDIITT
Secondary structure 
SS confidence 
Disorder 
?????
Disorder confidence 
 
   .........190.........200.........210........
Sequence  MRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND
Secondary structure 
SS confidence 
Disorder 
???????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2qlc chain C

3D model

Region: 91 - 214
Aligned: 124
Modelled: 124
Confidence: 100.0%
Identity: 44%
PDB header:dna binding protein
Chain: C: PDB Molecule:dna repair protein radc homolog;
PDBTitle: the crystal structure of dna repair protein radc from chlorobium2 tepidum tls

Phyre2

PDB 2bgw chain A domain 1

3D model

Region: 14 - 77
Aligned: 63
Modelled: 64
Confidence: 98.2%
Identity: 22%
Fold: SAM domain-like
Superfamily: RuvA domain 2-like
Family: Hef domain-like

Phyre2

PDB 3c1z chain A

3D model

Region: 3 - 77
Aligned: 75
Modelled: 75
Confidence: 98.0%
Identity: 19%
PDB header:dna binding protein
Chain: A: PDB Molecule:dna integrity scanning protein disa;
PDBTitle: structure of the ligand-free form of a bacterial dna damage2 sensor protein

Phyre2

PDB 1x2i chain A domain 1

3D model

Region: 13 - 77
Aligned: 63
Modelled: 65
Confidence: 98.0%
Identity: 24%
Fold: SAM domain-like
Superfamily: RuvA domain 2-like
Family: Hef domain-like

Phyre2

PDB 2a1j chain B domain 1

3D model

Region: 26 - 77
Aligned: 51
Modelled: 52
Confidence: 97.7%
Identity: 31%
Fold: SAM domain-like
Superfamily: RuvA domain 2-like
Family: Hef domain-like

Phyre2

PDB 2bhn chain D

3D model

Region: 15 - 77
Aligned: 62
Modelled: 62
Confidence: 97.6%
Identity: 21%
PDB header:hydrolase
Chain: D: PDB Molecule:xpf endonuclease;
PDBTitle: xpf from aeropyrum pernix

Phyre2

PDB 1kft chain A

3D model

Region: 36 - 76
Aligned: 41
Modelled: 41
Confidence: 97.6%
Identity: 27%
PDB header:dna binding protein
Chain: A: PDB Molecule:excinuclease abc subunit c;
PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli

Phyre2

PDB 1kft chain A

3D model

Region: 36 - 76
Aligned: 41
Modelled: 41
Confidence: 97.6%
Identity: 27%
Fold: SAM domain-like
Superfamily: RuvA domain 2-like
Family: Excinuclease UvrC C-terminal domain

Phyre2

PDB 1dgs chain A domain 1

3D model

Region: 16 - 77
Aligned: 61
Modelled: 62
Confidence: 97.1%
Identity: 20%
Fold: SAM domain-like
Superfamily: RuvA domain 2-like
Family: NAD+-dependent DNA ligase, domain 3

Phyre2

PDB 2i1q chain A domain 1

3D model

Region: 26 - 75
Aligned: 49
Modelled: 50
Confidence: 96.7%
Identity: 14%
Fold: SAM domain-like
Superfamily: Rad51 N-terminal domain-like
Family: DNA repair protein Rad51, N-terminal domain

Phyre2

PDB 2nrz chain B

3D model

Region: 37 - 76
Aligned: 39
Modelled: 40
Confidence: 96.7%
Identity: 15%
PDB header:hydrolase
Chain: B: PDB Molecule:uvrabc system protein c;
PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation

Phyre2

PDB 2owo chain A

3D model

Region: 19 - 92
Aligned: 73
Modelled: 74
Confidence: 96.6%
Identity: 18%
PDB header:ligase/dna
Chain: A: PDB Molecule:dna ligase;
PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate

Phyre2

PDB 1dgs chain B

3D model

Region: 19 - 77
Aligned: 58
Modelled: 59
Confidence: 96.6%
Identity: 21%
PDB header:ligase
Chain: B: PDB Molecule:dna ligase;
PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis

Phyre2

PDB 1pzn chain A domain 1

3D model

Region: 36 - 75
Aligned: 40
Modelled: 40
Confidence: 96.5%
Identity: 23%
Fold: SAM domain-like
Superfamily: Rad51 N-terminal domain-like
Family: DNA repair protein Rad51, N-terminal domain

Phyre2

PDB 2aq0 chain A domain 1

3D model

Region: 27 - 76
Aligned: 48
Modelled: 50
Confidence: 96.5%
Identity: 21%
Fold: SAM domain-like
Superfamily: RuvA domain 2-like
Family: Hef domain-like

Phyre2

PDB 1oi0 chain A

3D model

Region: 96 - 212
Aligned: 90
Modelled: 100
Confidence: 96.4%
Identity: 28%
Fold: Cytidine deaminase-like
Superfamily: JAB1/MPN domain
Family: JAB1/MPN domain

Phyre2

PDB 1v9p chain B

3D model

Region: 19 - 76
Aligned: 57
Modelled: 57
Confidence: 96.3%
Identity: 19%
PDB header:ligase
Chain: B: PDB Molecule:dna ligase;
PDBTitle: crystal structure of nad+-dependent dna ligase

Phyre2

PDB 1ixr chain A

3D model

Region: 9 - 74
Aligned: 63
Modelled: 66
Confidence: 96.1%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:holliday junction dna helicase ruva;
PDBTitle: ruva-ruvb complex

Phyre2

PDB 1szp chain A domain 1

3D model

Region: 37 - 75
Aligned: 39
Modelled: 39
Confidence: 96.0%
Identity: 26%
Fold: SAM domain-like
Superfamily: Rad51 N-terminal domain-like
Family: DNA repair protein Rad51, N-terminal domain

Phyre2

PDB 1cuk chain A domain 2

3D model

Region: 16 - 84
Aligned: 64
Modelled: 69
Confidence: 95.6%
Identity: 27%
Fold: SAM domain-like
Superfamily: RuvA domain 2-like
Family: DNA helicase RuvA subunit, middle domain

Phyre2
1
c2qlcC_
2
d2bgwa1
3
c3c1zA_
4
d1x2ia1
5
d2a1jb1
6
c2bhnD_
7
c1kftA_
8
d1kfta_
9
d1dgsa1
10
d2i1qa1
11
c2nrzB_
12
c2owoA_
13
c1dgsB_
14
d1pzna1
15
d2aq0a1
16
d1oi0a_
17
c1v9pB_
18
c1ixrA_
19
d1szpa1
20
d1cuka2
21
22
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24
25
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2qlcC_
100.0 44 PDB header:dna binding protein
Chain: C: PDB Molecule:dna repair protein radc homolog;
PDBTitle: the crystal structure of dna repair protein radc from chlorobium2 tepidum tls
2d2bgwa1
98.2 22 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
3c3c1zA_
98.0 19 PDB header:dna binding protein
Chain: A: PDB Molecule:dna integrity scanning protein disa;
PDBTitle: structure of the ligand-free form of a bacterial dna damage2 sensor protein
4d1x2ia1
98.0 24 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
5d2a1jb1
97.7 31 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
6c2bhnD_
97.6 21 PDB header:hydrolase
Chain: D: PDB Molecule:xpf endonuclease;
PDBTitle: xpf from aeropyrum pernix
7c1kftA_
97.6 27 PDB header:dna binding protein
Chain: A: PDB Molecule:excinuclease abc subunit c;
PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli
8d1kfta_
97.6 27 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Excinuclease UvrC C-terminal domain
9d1dgsa1
97.1 20 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:NAD+-dependent DNA ligase, domain 3
10d2i1qa1
96.7 14 Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
11c2nrzB_
96.7 15 PDB header:hydrolase
Chain: B: PDB Molecule:uvrabc system protein c;
PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation
12c2owoA_
96.6 18 PDB header:ligase/dna
Chain: A: PDB Molecule:dna ligase;
PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate
13c1dgsB_
96.6 21 PDB header:ligase
Chain: B: PDB Molecule:dna ligase;
PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis
14d1pzna1
96.5 23 Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
15d2aq0a1
96.5 21 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
16d1oi0a_
96.4 28 Fold:Cytidine deaminase-like
Superfamily:JAB1/MPN domain
Family:JAB1/MPN domain
17c1v9pB_
96.3 19 PDB header:ligase
Chain: B: PDB Molecule:dna ligase;
PDBTitle: crystal structure of nad+-dependent dna ligase
18c1ixrA_
96.1 19 PDB header:hydrolase
Chain: A: PDB Molecule:holliday junction dna helicase ruva;
PDBTitle: ruva-ruvb complex
19d1szpa1
96.0 26 Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
20d1cuka2
95.6 27 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:DNA helicase RuvA subunit, middle domain
21c1hjpA_
not modelled 95.5 21 PDB header:dna recombination
Chain: A: PDB Molecule:ruva;
PDBTitle: holliday junction binding protein ruva from e. coli
22c1b22A_
not modelled 95.2 20 PDB header:dna binding protein
Chain: A: PDB Molecule:dna repair protein rad51;
PDBTitle: rad51 (n-terminal domain)
23d1b22a_
not modelled 95.2 20 Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
24d1szpb1
not modelled 95.0 25 Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
25c2kcqA_
not modelled 95.0 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mov34/mpn/pad-1 family;
PDBTitle: solution structure of protein sru_2040 from salinibacter2 ruber (strain dsm 13855) . northeast structural genomics3 consortium target srr106
26c2kksA_
not modelled 94.8 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of protein dsy2949 from desulfitobacterium2 hafniense. northeast structural genomics consortium target dhr27
27c1d8lA_
not modelled 94.6 25 PDB header:gene regulation
Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva);
PDBTitle: e. coli holliday junction binding protein ruva nh2 region2 lacking domain iii
28c2h5xA_
not modelled 94.6 17 PDB header:dna binding protein
Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva;
PDBTitle: ruva from mycobacterium tuberculosis
29d1ixra1
not modelled 94.5 20 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:DNA helicase RuvA subunit, middle domain
30d1pu6a_
not modelled 94.5 23 Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:3-Methyladenine DNA glycosylase III (MagIII)
31d1ngna_
not modelled 93.0 17 Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
32d1rrqa1
not modelled 92.1 13 Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
33c1rrqA_
not modelled 91.9 11 PDB header:hydrolase/dna
Chain: A: PDB Molecule:muty;
PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair
34d1kg2a_
not modelled 91.7 11 Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
35d1keaa_
not modelled 91.6 14 Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
36c3n5nX_
not modelled 91.6 13 PDB header:hydrolase
Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase;
PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue
37d1bvsa2
not modelled 91.5 23 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:DNA helicase RuvA subunit, middle domain
38d2abka_
not modelled 90.9 17 Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Endonuclease III
39d1orna_
not modelled 90.6 13 Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Endonuclease III
40c1yqmA_
not modelled 89.1 20 PDB header:hydrolase/dna
Chain: A: PDB Molecule:n-glycosylase/dna lyase;
PDBTitle: catalytically inactive human 8-oxoguanine glycosylase2 crosslinked to 7-deazaguanine containing dna
41d1lb2b_
not modelled 88.7 20 Fold:SAM domain-like
Superfamily:C-terminal domain of RNA polymerase alpha subunit
Family:C-terminal domain of RNA polymerase alpha subunit
42d1z3eb1
not modelled 87.8 32 Fold:SAM domain-like
Superfamily:C-terminal domain of RNA polymerase alpha subunit
Family:C-terminal domain of RNA polymerase alpha subunit
43c1ko9A_
not modelled 86.6 20 PDB header:hydrolase
Chain: A: PDB Molecule:8-oxoguanine dna glycosylase;
PDBTitle: native structure of the human 8-oxoguanine dna glycosylase2 hogg1
44d1doqa_
not modelled 86.3 27 Fold:SAM domain-like
Superfamily:C-terminal domain of RNA polymerase alpha subunit
Family:C-terminal domain of RNA polymerase alpha subunit
45d1cooa_
not modelled 85.7 20 Fold:SAM domain-like
Superfamily:C-terminal domain of RNA polymerase alpha subunit
Family:C-terminal domain of RNA polymerase alpha subunit
46c3f10A_
not modelled 85.1 18 PDB header:hydrolase, lyase
Chain: A: PDB Molecule:8-oxoguanine-dna-glycosylase;
PDBTitle: crystal structure of clostridium acetobutylicum 8-oxoguanine dna2 glycosylase in complex with 8-oxoguanosine
47c2w6rA_
not modelled 82.1 13 PDB header:lyase
Chain: A: PDB Molecule:imidazole glycerol phosphate synthase subunit
PDBTitle: crystal structure of an artificial (ba)8-barrel protein2 designed from identical half barrels
48d1u9la_
not modelled 78.1 23 Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:NusA extra C-terminal domains
49d1mpga1
not modelled 75.2 7 Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:DNA repair glycosylase, 2 C-terminal domains
50c1s5lu_
not modelled 75.1 18 PDB header:photosynthesis
Chain: U: PDB Molecule:photosystem ii 12 kda extrinsic protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
51c3s6iA_
not modelled 74.8 15 PDB header:hydrolase/dna
Chain: A: PDB Molecule:dna-3-methyladenine glycosylase 1;
PDBTitle: schizosaccaromyces pombe 3-methyladenine dna glycosylase (mag1) in2 complex with abasic-dna.
52d2axtu1
not modelled 74.2 18 Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:PsbU-like
53d3bzka1
not modelled 73.8 19 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Tex HhH-containing domain-like
54d2duya1
not modelled 72.4 26 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:ComEA-like
55d2a1ja1
not modelled 72.2 24 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
56c3tdmD_
not modelled 71.4 11 PDB header:de novo protein
Chain: D: PDB Molecule:computationally designed two-fold symmetric tim-barrel
PDBTitle: computationally designed tim-barrel protein, halfflr
57c3fhgA_
not modelled 70.4 19 PDB header:dna repair, hydrolase, lyase
Chain: A: PDB Molecule:n-glycosylase/dna lyase;
PDBTitle: crystal structure of sulfolobus solfataricus 8-oxoguanine dna2 glycosylase (ssogg)
58d2csba4
not modelled 69.6 18 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Topoisomerase V repeat domain
59d1f6ya_
not modelled 69.4 23 Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Methyltetrahydrofolate-utiluzing methyltransferases
60c2jhnB_
not modelled 66.3 10 PDB header:hydrolase
Chain: B: PDB Molecule:3-methyladenine dna-glycosylase;
PDBTitle: 3-methyladenine dna-glycosylase from archaeoglobus fulgidus
61d2csba1
not modelled 62.3 16 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Topoisomerase V repeat domain
62c3gzaB_
not modelled 62.3 10 PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-l-fucosidase;
PDBTitle: crystal structure of putative alpha-l-fucosidase (np_812709.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.60 a resolution
63c2yciX_
not modelled 61.3 22 PDB header:transferase
Chain: X: PDB Molecule:5-methyltetrahydrofolate corrinoid/iron sulfur protein
PDBTitle: methyltransferase native
64c3n0uB_
not modelled 61.2 25 PDB header:hydrolase, lyase
Chain: B: PDB Molecule:probable n-glycosylase/dna lyase;
PDBTitle: crystal structure of tm1821, the 8-oxoguanine dna glycosylase of2 thermotoga maritima
65c3auoB_
not modelled 60.8 15 PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase beta family (x family);
PDBTitle: dna polymerase x from thermus thermophilus hb8 ternary complex with 1-2 nt gapped dna and ddgtp
66c3q94B_
not modelled 60.1 16 PDB header:lyase
Chain: B: PDB Molecule:fructose-bisphosphate aldolase, class ii;
PDBTitle: the crystal structure of fructose 1,6-bisphosphate aldolase from2 bacillus anthracis str. 'ames ancestor'
67c2yg8B_
not modelled 59.8 23 PDB header:hydrolase
Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative;
PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (2 alka) from deinococcus radiodurans
68d2edua1
not modelled 59.8 20 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:ComEA-like
69d2noha1
not modelled 58.7 12 Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:DNA repair glycosylase, 2 C-terminal domains
70d2e1fa1
not modelled 58.2 12 Fold:SAM domain-like
Superfamily:HRDC-like
Family:HRDC domain from helicases
71d1d8ba_
not modelled 57.9 3 Fold:SAM domain-like
Superfamily:HRDC-like
Family:HRDC domain from helicases
72d1gvfa_
not modelled 57.4 9 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class II FBP aldolase
73c3eypB_
not modelled 57.0 16 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative alpha-l-fucosidase;
PDBTitle: crystal structure of putative alpha-l-fucosidase from bacteroides2 thetaiotaomicron
74c3c52B_
not modelled 55.1 14 PDB header:lyase
Chain: B: PDB Molecule:fructose-bisphosphate aldolase;
PDBTitle: class ii fructose-1,6-bisphosphate aldolase from2 helicobacter pylori in complex with3 phosphoglycolohydroxamic acid, a competitive inhibitor
75d2fmpa1
not modelled 54.5 21 Fold:SAM domain-like
Superfamily:DNA polymerase beta, N-terminal domain-like
Family:DNA polymerase beta, N-terminal domain-like
76c2iswB_
not modelled 54.4 11 PDB header:lyase
Chain: B: PDB Molecule:putative fructose-1,6-bisphosphate aldolase;
PDBTitle: structure of giardia fructose-1,6-biphosphate aldolase in2 complex with phosphoglycolohydroxamate
77c2wvsD_
not modelled 54.3 18 PDB header:hydrolase
Chain: D: PDB Molecule:alpha-l-fucosidase;
PDBTitle: crystal structure of an alpha-l-fucosidase gh29 trapped2 covalent intermediate from bacteroides thetaiotaomicron in3 complex with 2-fluoro-fucosyl fluoride using an e288q4 mutant
78d2csua1
not modelled 53.1 11 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
79c3pm6B_
not modelled 51.9 25 PDB header:lyase
Chain: B: PDB Molecule:putative fructose-bisphosphate aldolase;
PDBTitle: crystal structure of a putative fructose-1,6-biphosphate aldolase from2 coccidioides immitis solved by combined sad mr
80c3mo4B_
not modelled 50.6 19 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-1,3/4-fucosidase;
PDBTitle: the crystal structure of an alpha-(1-3,4)-fucosidase from2 bifidobacterium longum subsp. infantis atcc 15697
81c1wcnA_
not modelled 50.3 29 PDB header:rna-binding protein
Chain: A: PDB Molecule:transcription elongation protein nusa;
PDBTitle: nmr structure of the carboxyterminal domains of escherichia2 coli nusa
82c3jrkG_
not modelled 49.6 13 PDB header:lyase
Chain: G: PDB Molecule:tagatose 1,6-diphosphate aldolase 2;
PDBTitle: a putative tagatose 1,6-diphosphate aldolase from streptococcus2 pyogenes
83d2bcqa1
not modelled 49.6 26 Fold:SAM domain-like
Superfamily:DNA polymerase beta, N-terminal domain-like
Family:DNA polymerase beta, N-terminal domain-like
84d1rvga_
not modelled 49.3 16 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class II FBP aldolase
85c1mpgB_
not modelled 47.3 10 PDB header:hydrolase
Chain: B: PDB Molecule:3-methyladenine dna glycosylase ii;
PDBTitle: 3-methyladenine dna glycosylase ii from escherichia coli
86d1hl9a2
not modelled 46.7 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Putative alpha-L-fucosidase, catalytic domain
87d1wuda1
not modelled 41.9 18 Fold:SAM domain-like
Superfamily:HRDC-like
Family:HRDC domain from helicases
88d1ka9f_
not modelled 41.6 18 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
89d1nzpa_
not modelled 39.7 26 Fold:SAM domain-like
Superfamily:DNA polymerase beta, N-terminal domain-like
Family:DNA polymerase beta, N-terminal domain-like
90d1jmsa1
not modelled 39.6 22 Fold:SAM domain-like
Superfamily:DNA polymerase beta, N-terminal domain-like
Family:DNA polymerase beta, N-terminal domain-like
91c3e49A_
not modelled 37.9 22 PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein duf849 with a tim barrel fold;
PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 with a tim barrel fold (bxe_c0966) from burkholderia xenovorans lb4003 at 1.75 a resolution
92c3elfA_
not modelled 37.5 16 PDB header:lyase
Chain: A: PDB Molecule:fructose-bisphosphate aldolase;
PDBTitle: structural characterization of tetrameric mycobacterium tuberculosis2 fructose 1,6-bisphosphate aldolase - substrate binding and catalysis3 mechanism of a class iia bacterial aldolase
93c1nomA_
not modelled 37.1 53 PDB header:nucleotidyltransferase
Chain: A: PDB Molecule:dna polymerase beta;
PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7), 31-kd domain; soaked in the2 presence of mncl2 (5 millimolar)
94c3k13A_
not modelled 37.0 17 PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase;
PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron
95c3majA_
not modelled 36.2 6 PDB header:dna binding protein
Chain: A: PDB Molecule:dna processing chain a;
PDBTitle: crystal structure of putative dna processing protein dpra from2 rhodopseudomonas palustris cga009
96c2csdB_
not modelled 34.9 22 PDB header:isomerase
Chain: B: PDB Molecule:topoisomerase v;
PDBTitle: crystal structure of topoisomerase v (61 kda fragment)
97c3qm3C_
not modelled 33.9 11 PDB header:lyase
Chain: C: PDB Molecule:fructose-bisphosphate aldolase;
PDBTitle: 1.85 angstrom resolution crystal structure of fructose-bisphosphate2 aldolase (fba) from campylobacter jejuni
98c2bcuA_
not modelled 33.9 25 PDB header:transferase, lyase/dna
Chain: A: PDB Molecule:dna polymerase lambda;
PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch
99c2rrdA_
not modelled 33.4 14 PDB header:dna binding protein
Chain: A: PDB Molecule:hrdc domain from bloom syndrome protein;
PDBTitle: structure of hrdc domain from human bloom syndrome protein, blm
100c3op1A_
not modelled 33.3 15 PDB header:transferase
Chain: A: PDB Molecule:macrolide-efflux protein;
PDBTitle: crystal structure of macrolide-efflux protein sp_1110 from2 streptococcus pneumoniae
101d1dosa_
not modelled 32.9 16 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class II FBP aldolase
102d1gjja2
not modelled 32.2 22 Fold:LEM/SAP HeH motif
Superfamily:LEM domain
Family:LEM domain
103d2p6ra2
not modelled 31.5 20 Fold:Sec63 N-terminal domain-like
Superfamily:Sec63 N-terminal domain-like
Family:Achaeal helicase C-terminal domain
104c3stgA_
not modelled 30.9 9 PDB header:transferase
Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase;
PDBTitle: crystal structure of a58p, del(n59), and loop 7 truncated mutant of 3-2 deoxy-d-manno-octulosonate 8-phosphate synthase (kdo8ps) from3 neisseria meningitidis
105d1h5ya_
not modelled 29.4 12 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
106c3kntC_
not modelled 29.0 18 PDB header:hydrolase, lyase/dna
Chain: C: PDB Molecule:n-glycosylase/dna lyase;
PDBTitle: crystal structure of methanocaldococcus jannaschii 8-2 oxoguanine glycosylase/lyase in complex with 15mer dna3 containing 8-oxoguanine
107c2ziuA_
not modelled 28.9 18 PDB header:hydrolase
Chain: A: PDB Molecule:mus81 protein;
PDBTitle: crystal structure of the mus81-eme1 complex
108d1jeia_
not modelled 28.5 22 Fold:LEM/SAP HeH motif
Superfamily:LEM domain
Family:LEM domain
109d1dk2a_
not modelled 28.3 21 Fold:SAM domain-like
Superfamily:DNA polymerase beta, N-terminal domain-like
Family:DNA polymerase beta, N-terminal domain-like
110d1i94m_
not modelled 27.2 25 Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
111d2odgc1
not modelled 27.0 22 Fold:LEM/SAP HeH motif
Superfamily:LEM domain
Family:LEM domain
112c3lotC_
not modelled 25.6 21 PDB header:structure genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein of unknown function (np_070038.1) from2 archaeoglobus fulgidus at 1.89 a resolution
113c1kdhA_
not modelled 25.4 22 PDB header:transferase/dna
Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short
PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna
114d2gy9m1
not modelled 25.0 25 Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
115d1b43a1
not modelled 24.6 54 Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
116d1xo1a1
not modelled 24.6 15 Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
117c3iz6M_
not modelled 24.3 20 PDB header:ribosome
Chain: M: PDB Molecule:40s ribosomal protein s18 (s13p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
118d1mc8a1
not modelled 24.2 54 Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
119d1a77a1
not modelled 24.1 54 Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
120c2xznM_
not modelled 23.7 28 PDB header:ribosome
Chain: M: PDB Molecule:rps18e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2

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