Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP14738
DateTue Jul 17 17:05:09 BST 2012
Unique Job ID03f4effed6783aa6

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1n67A_
Top template information
PDB header:cell adhesion
Chain: A: PDB Molecule:clumping factor;
PDBTitle: clumping factor a from staphylococcus aureus
Confidence and coverage
Confidence: 99.9% Coverage: 32%
326 residues ( 32% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 59% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKNNLRYGIRKHKLGAASVFLGTMIVVGMGQDKEAAASEQKTTTVEENGNSATDNKTSET
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   .........70.........80.........90.........100.........110.........120
Sequence  QTTATNVNHIEETQSYNATVTEQPSNATQVTTEEAPKAVQAPQTAQPANIETVKEEVVKE
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Disorder  ????????????????????????????????????????????????????????????
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   .........130.........140.........150.........160.........170.........180
Sequence  EAKPQVKETTQSQDNSGDQRQVDLTPKKATQNQVAETQVEVAQPRTASESKPRVTRSADV
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   .........190.........200.........210.........220.........230.........240
Sequence  AEAKEASNAKVETGTDVTSKVTVEIGSIEGHNNTNKVEPHAGQRAVLKYKLKFENGLHQG
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   .........250.........260.........270.........280.........290.........300
Sequence  DYFDFTLSNNVNTHGVSTARKVPEIKNGSVVMATGEVLEGGKIRYTFTNDIEDKVDVTAE
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   .........310.........320.........330.........340.........350.........360
Sequence  LEINLFIDPKTVQTNGNQTITSTLNEEQTSKELDVKYKDGIGNYYANLNGSIETFNKANN
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   .........370.........380.........390.........400.........410.........420
Sequence  RFSHVAFIKPNNGKTTSVTVTGTLMKGSNQNGNQPKVRIFEYLGNNEDIAKSVYANTTDT
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   .........430.........440.........450.........460.........470.........480
Sequence  SKFKEVTSNMSGNLNLQNNGSYSLNIENLDKTYVVHYDGEYLNGTDEVDFRTQMVGHPEQ
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   .........490.........500.........510.........520.........530.........540
Sequence  LYKYYYDRGYTLTWDNGLVLYSNKANGNEKNGPIIQNNKFEYKEDTIKETLTGQYDKNLV
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   .........550.........560.........570.........580.........590.........600
Sequence  TTVEEEYDSSTLDIDYHTAIDGGGGYVDGYIETIEETDSSAIDIDYHTAVDSEAGHVGGY
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   .........610.........620.........630.........640.........650.........660
Sequence  TESSEESNPIDFEESTHENSKHHADVVEYEEDTNPGGGQVTTESNLVEFDEESTKGIVTG
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   .........670.........680.........690.........700.........710.........720
Sequence  AVSDHTTVEDTKEYTTESNLIELVDELPEEHGQAQGPVEEITKNNHHISHSGLGTENGHG
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   .........730.........740.........750.........760.........770.........780
Sequence  NYDVIEEIEENSHVDIKSELGYEGGQNSGNQSFEEDTEEDKPKYEQGGNIVDIDFDSVPQ
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   .........790.........800.........810.........820.........830.........840
Sequence  IHGQNKGNQSFEEDTEKDKPKYEHGGNIIDIDFDSVPHIHGFNKHTEIIEEDTNKDKPSY
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   .........850.........860.........870.........880.........890.........900
Sequence  QFGGHNSVDFEEDTLPKVSGQNEGQQTIEEDTTPPIVPPTPPTPEVPSEPETPTPPTPEV
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   .........910.........920.........930.........940.........950.........960
Sequence  PSEPETPTPPTPEVPSEPETPTPPTPEVPAEPGKPVPPAKEEPKKPSKPVEQGKVVTPVI
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   .........970.........980.........990.........1000.........1010........
Sequence  EINEKVKAVAPTKKPQSKKSELPETGGEESTNKGMLFGGLFSILGLALLRRNKKNHKA
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???????????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1n67 chain A

3D model

Region: 194 - 530
Aligned: 326
Modelled: 337
Confidence: 99.9%
Identity: 23%
PDB header:cell adhesion
Chain: A: PDB Molecule:clumping factor;
PDBTitle: clumping factor a from staphylococcus aureus

Phyre2

PDB 3at0 chain A

3D model

Region: 194 - 488
Aligned: 289
Modelled: 291
Confidence: 99.9%
Identity: 20%
PDB header:cell adhesion/blood clotting
Chain: A: PDB Molecule:clumping factor b;
PDBTitle: structural and biochemical characterization of clfb:ligand2 interactions

Phyre2

PDB 2vr3 chain B

3D model

Region: 195 - 513
Aligned: 307
Modelled: 319
Confidence: 99.9%
Identity: 23%
PDB header:cell adhesion
Chain: B: PDB Molecule:clumping factor a;
PDBTitle: structural and biochemical characterization of fibrinogen2 binding to clfa from staphylocccus aureus

Phyre2

PDB 1r19 chain B

3D model

Region: 195 - 501
Aligned: 293
Modelled: 307
Confidence: 99.8%
Identity: 19%
PDB header:cell adhesion
Chain: B: PDB Molecule:fibrinogen-binding protein sdrg;
PDBTitle: crystal structure analysis of s.epidermidis adhesin sdrg2 binding to fibrinogen (apo structure)

Phyre2

PDB 3irp chain X

3D model

Region: 191 - 466
Aligned: 261
Modelled: 276
Confidence: 99.4%
Identity: 13%
PDB header:cell adhesion
Chain: X: PDB Molecule:uro-adherence factor a;
PDBTitle: crystal structure of functional region of uafa from staphylococcus2 saprophyticus at 1.50 angstrom resolution

Phyre2

PDB 1n67 chain A domain 1

3D model

Region: 194 - 337
Aligned: 141
Modelled: 144
Confidence: 99.4%
Identity: 33%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Fibrinogen-binding domain

Phyre2

PDB 1r17 chain A domain 1

3D model

Region: 194 - 337
Aligned: 144
Modelled: 144
Confidence: 99.3%
Identity: 21%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Fibrinogen-binding domain

Phyre2

PDB 1r17 chain A domain 2

3D model

Region: 338 - 513
Aligned: 170
Modelled: 176
Confidence: 99.1%
Identity: 21%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Fibrinogen-binding domain

Phyre2

PDB 1n67 chain A domain 2

3D model

Region: 338 - 530
Aligned: 185
Modelled: 193
Confidence: 98.9%
Identity: 16%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Fibrinogen-binding domain

Phyre2

PDB 2f6a chain A

3D model

Region: 220 - 401
Aligned: 177
Modelled: 182
Confidence: 98.1%
Identity: 12%
PDB header:cell adhesion/structural protein
Chain: A: PDB Molecule:collagen adhesin;
PDBTitle: collagen adhesin and collagen complex structure

Phyre2

PDB 2z1p chain A

3D model

Region: 220 - 397
Aligned: 164
Modelled: 173
Confidence: 96.9%
Identity: 13%
PDB header:cell adhesion
Chain: A: PDB Molecule:collagen adhesin protein;
PDBTitle: the enterococcus faecalis mscramm ace binds its ligands by2 the collagen hug model

Phyre2

PDB 2jp3 chain A

3D model

Region: 992 - 1013
Aligned: 22
Modelled: 22
Confidence: 81.4%
Identity: 45%
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles

Phyre2

PDB 2jo1 chain A

3D model

Region: 992 - 1013
Aligned: 22
Modelled: 22
Confidence: 77.7%
Identity: 23%
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles

Phyre2

PDB 3kdp chain G

3D model

Region: 994 - 1013
Aligned: 20
Modelled: 20
Confidence: 68.7%
Identity: 35%
PDB header:hydrolase
Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump

Phyre2

PDB 3kdp chain H

3D model

Region: 994 - 1013
Aligned: 20
Modelled: 20
Confidence: 68.7%
Identity: 35%
PDB header:hydrolase
Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump

Phyre2

PDB 2zxe chain G

3D model

Region: 992 - 1013
Aligned: 22
Modelled: 22
Confidence: 64.7%
Identity: 18%
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:phospholemman-like protein;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state

Phyre2

PDB 2l2t chain A

3D model

Region: 991 - 1017
Aligned: 27
Modelled: 27
Confidence: 61.2%
Identity: 30%
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4;
PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain

Phyre2

PDB 3n23 chain E

3D model

Region: 994 - 1009
Aligned: 16
Modelled: 16
Confidence: 57.5%
Identity: 38%
PDB header:hydrolase
Chain: E: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the high affinity complex between ouabain and the2 e2p form of the sodium-potassium pump

Phyre2

PDB 1m57 chain H

3D model

Region: 994 - 1017
Aligned: 24
Modelled: 24
Confidence: 52.0%
Identity: 17%
PDB header:oxidoreductase
Chain: H: PDB Molecule:cytochrome c oxidase;
PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant))

Phyre2

PDB 2k9y chain B

3D model

Region: 993 - 1013
Aligned: 21
Modelled: 21
Confidence: 38.8%
Identity: 24%
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0

Phyre2
1

c1n67A_
2

c3at0A_
3

c2vr3B_
4

c1r19B_
5

c3irpX_
6

d1n67a1
7

d1r17a1
8

d1r17a2
9

d1n67a2
10

c2f6aA_
11

c2z1pA_
12

c2jp3A_
13

c2jo1A_
14

c3kdpG_
15

c3kdpH_
16

c2zxeG_
17

c2l2tA_
18

c3n23E_
19

c1m57H_
20

c2k9yB_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1n67A_



99.9 23 PDB header:cell adhesion
Chain: A: PDB Molecule:clumping factor;
PDBTitle: clumping factor a from staphylococcus aureus
2c3at0A_



99.9 20 PDB header:cell adhesion/blood clotting
Chain: A: PDB Molecule:clumping factor b;
PDBTitle: structural and biochemical characterization of clfb:ligand2 interactions
3c2vr3B_



99.9 23 PDB header:cell adhesion
Chain: B: PDB Molecule:clumping factor a;
PDBTitle: structural and biochemical characterization of fibrinogen2 binding to clfa from staphylocccus aureus
4c1r19B_



99.8 19 PDB header:cell adhesion
Chain: B: PDB Molecule:fibrinogen-binding protein sdrg;
PDBTitle: crystal structure analysis of s.epidermidis adhesin sdrg2 binding to fibrinogen (apo structure)
5c3irpX_



99.4 13 PDB header:cell adhesion
Chain: X: PDB Molecule:uro-adherence factor a;
PDBTitle: crystal structure of functional region of uafa from staphylococcus2 saprophyticus at 1.50 angstrom resolution
6d1n67a1



99.4 33 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Bacterial adhesins
Family:Fibrinogen-binding domain
7d1r17a1



99.3 21 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Bacterial adhesins
Family:Fibrinogen-binding domain
8d1r17a2



99.1 21 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Bacterial adhesins
Family:Fibrinogen-binding domain
9d1n67a2



98.9 16 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Bacterial adhesins
Family:Fibrinogen-binding domain
10c2f6aA_



98.1 12 PDB header:cell adhesion/structural protein
Chain: A: PDB Molecule:collagen adhesin;
PDBTitle: collagen adhesin and collagen complex structure
11c2z1pA_



96.9 13 PDB header:cell adhesion
Chain: A: PDB Molecule:collagen adhesin protein;
PDBTitle: the enterococcus faecalis mscramm ace binds its ligands by2 the collagen hug model
12c2jp3A_



81.4 45 PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
13c2jo1A_



77.7 23 PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
14c3kdpG_



68.7 35 PDB header:hydrolase
Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump
15c3kdpH_



68.7 35 PDB header:hydrolase
Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump
16c2zxeG_



64.7 18 PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:phospholemman-like protein;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
17c2l2tA_



61.2 30 PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4;
PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain
18c3n23E_



57.5 38 PDB header:hydrolase
Chain: E: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the high affinity complex between ouabain and the2 e2p form of the sodium-potassium pump
19c1m57H_



52.0 17 PDB header:oxidoreductase
Chain: H: PDB Molecule:cytochrome c oxidase;
PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant))
20c2k9yB_



38.8 24 PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
21c2k9yA_



not modelled 34.4 24 PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
22c2k1kB_



not modelled 32.1 31 PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
23c2k1lA_



not modelled 32.1 31 PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
24c2k1kA_



not modelled 32.1 31 PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
25c2k1lB_



not modelled 32.1 31 PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
26c1iijA_



not modelled 28.5 22 PDB header:signaling protein
Chain: A: PDB Molecule:erbb-2 receptor protein-tyrosine kinase;
PDBTitle: solution structure of the neu/erbb-2 membrane spanning2 segment
27d3ehbb2



not modelled 26.4 13 Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
28d3dtub2



not modelled 25.9 17 Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
29d1fftb2



not modelled 25.6 8 Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
30d1d3va_



not modelled 24.5 13 Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Arginase-like amidino hydrolases
31c1qleB_



not modelled 24.4 12 PDB header:oxidoreductase/immune system
Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii;
PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit2 cytochrome c oxidase in the completely oxidized state3 complexed with an antibody fv fragment
32c1ar1B_



not modelled 24.4 12 PDB header:complex (oxidoreductase/antibody)
Chain: B: PDB Molecule:cytochrome c oxidase;
PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment
33c3of4A_



not modelled 23.8 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of a fmn/fad- and nad(p)h-dependent nitroreductase2 (nfnb, il2077) from idiomarina loihiensis l2tr at 1.90 a resolution
34d2frea1



not modelled 22.0 25 Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
35d1vkwa_



not modelled 21.3 25 Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:Putative nitroreductase TM1586
36c3g2eA_



not modelled 21.3 35 PDB header:oxidoreductase
Chain: A: PDB Molecule:oorc subunit of 2-oxoglutarate:acceptor oxidoreductase;
PDBTitle: structure of putative oorc subunit of 2-oxoglutarate:acceptor2 oxidoreductase from campylobacter jejuni
37c2wqfA_



not modelled 21.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:copper induced nitroreductase d;
PDBTitle: crystal structure of the nitroreductase cind from2 lactococcus lactis in complex with fmn
38c2f5uA_



not modelled 21.0 21 PDB header:viral protein
Chain: A: PDB Molecule:virion protein ul25;
PDBTitle: structural characterization of the ul25 dna packaging2 protein from herpes simplex virus type 1
39d2ifaa1



not modelled 21.0 20 Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
40c2h0uA_



not modelled 19.1 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph-flavin oxidoreductase;
PDBTitle: crystal structure of nad(p)h-flavin oxidoreductase from helicobacter2 pylori
41c2okrF_



not modelled 18.3 63 PDB header:transferase
Chain: F: PDB Molecule:map kinase-activated protein kinase 2;
PDBTitle: crystal structure of the p38a-mapkap kinase 2 heterodimer
42c2okrC_



not modelled 18.3 63 PDB header:transferase
Chain: C: PDB Molecule:map kinase-activated protein kinase 2;
PDBTitle: crystal structure of the p38a-mapkap kinase 2 heterodimer
43c3rkoF_



not modelled 17.6 9 PDB header:oxidoreductase
Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
44c3m5kA_



not modelled 17.2 40 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative nadh dehydrogenase/nad(p)h nitroreductase;
PDBTitle: crystal structure of putative nadh dehydrogenase/nad(p)h2 nitroreductase (bdi_1728) from parabacteroides distasonis atcc 85033 at 1.86 a resolution
45d1bkja_



not modelled 17.0 38 Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
46c2hayD_



not modelled 16.8 30 PDB header:oxidoreductase
Chain: D: PDB Molecule:putative nad(p)h-flavin oxidoreductase;
PDBTitle: the crystal structure of the putative nad(p)h-flavin oxidoreductase2 from streptococcus pyogenes m1 gas
47c3g14B_



not modelled 16.7 30 PDB header:oxidoreductase
Chain: B: PDB Molecule:nitroreductase family protein;
PDBTitle: crystal structure of nitroreductase family protein (yp_877874.1) from2 clostridium novyi nt at 1.75 a resolution
48c3ge5A_



not modelled 16.4 30 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative nad(p)h:fmn oxidoreductase;
PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (pg0310)2 from porphyromonas gingivalis w83 at 1.70 a resolution
49c3j0cG_



not modelled 16.0 24 PDB header:virus
Chain: G: PDB Molecule:e1 envelope glycoprotein;
PDBTitle: models of e1, e2 and cp of venezuelan equine encephalitis virus tc-832 strain restrained by a near atomic resolution cryo-em map
50c2wzvB_



not modelled 14.9 25 PDB header:oxidoreductase
Chain: B: PDB Molecule:nfnb protein;
PDBTitle: crystal structure of the fmn-dependent nitroreductase nfnb2 from mycobacterium smegmatis
51c3kwkA_



not modelled 14.5 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative nadh dehydrogenase/nad(p)h nitroreductase;
PDBTitle: crystal structure of putative nadh dehydrogenase/nad(p)h2 nitroreductase (np_809094.1) from bacteroides thetaiotaomicron vpi-3 5482 at 1.54 a resolution
52c3ek3A_



not modelled 13.9 20 PDB header:flavoprotein
Chain: A: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of nitroreductase with bound fmn (yp_211706.1) from2 bacteroides fragilis nctc 9343 at 1.70 a resolution
53d1kqba_



not modelled 13.8 14 Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
54c3n2sD_



not modelled 13.3 25 PDB header:oxidoreductase
Chain: D: PDB Molecule:nadph-dependent nitro/flavin reductase;
PDBTitle: structure of nfra1 nitroreductase from b. subtilis
55c1qcrD_



not modelled 13.1 33 PDB header:
PDB COMPND:
56c3b9yA_



not modelled 13.1 18 PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter family rh-like protein;
PDBTitle: crystal structure of the nitrosomonas europaea rh protein
57c3pxvD_



not modelled 12.2 40 PDB header:oxidoreductase
Chain: D: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of a nitroreductase with bound fmn (dhaf_2018) from2 desulfitobacterium hafniense dcb-2 at 2.30 a resolution
58d2csba2



not modelled 12.1 60 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Topoisomerase V repeat domain
59c2w2hB_



not modelled 12.1 21 PDB header:rna-binding protein
Chain: B: PDB Molecule:cyclin-t1;
PDBTitle: structural basis of transcription activation by the cyclin2 t1-tat-tar rna complex from eiav
60c2r01A_



not modelled 12.1 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:nitroreductase family protein;
PDBTitle: crystal structure of a putative fmn-dependent nitroreductase (ct0345)2 from chlorobium tepidum tls at 1.15 a resolution
61d1q90m_



not modelled 12.0 50 Fold:Single transmembrane helix
Superfamily:PetM subunit of the cytochrome b6f complex
Family:PetM subunit of the cytochrome b6f complex
62d1ppjw_



not modelled 12.0 17 Fold:Single transmembrane helix
Superfamily:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
63d1f5va_



not modelled 11.6 25 Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
64c2b9n6_



not modelled 11.6 9 PDB header:ribosome
Chain: 6: PDB Molecule:50s ribosomal protein l33;
PDBTitle: 50s ribosomal subunit from a crystal structure of release factor rf2,2 trnas and mrna bound to the ribosome. this file contains the 50s3 subunit from a crystal structure of release factor rf1, trnas and4 mrna bound to the ribosome and is described in remark 400.
65d2zjr11



not modelled 11.6 9 Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L33p
66c3e39A_



not modelled 11.6 38 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative nitroreductase;
PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (dde_0787) from desulfovibrio desulfuricans subsp. at 1.70 a3 resolution
67c2l2oA_



not modelled 11.5 33 PDB header:unknown function
Chain: A: PDB Molecule:upf0727 protein c6orf115;
PDBTitle: solution structure of human hspc280 protein
68d2f93b1



not modelled 11.4 40 Fold:Transmembrane helix hairpin
Superfamily:Htr2 transmembrane domain-like
Family:Htr2 transmembrane domain-like
69c2f93B_



not modelled 11.4 40 PDB header:membrane protein
Chain: B: PDB Molecule:sensory rhodopsin ii transducer;
PDBTitle: k intermediate structure of sensory rhodopsin ii/transducer complex in2 combination with the ground state structure
70d1vfra_



not modelled 11.3 43 Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
71d3cx5i1



not modelled 11.3 11 Fold:Single transmembrane helix
Superfamily:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
72c3gr3B_



not modelled 11.2 38 PDB header:flavoprotein
Chain: B: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of a nitroreductase-like family protein (pnba,2 bh06130) from bartonella henselae str. houston-1 at 1.45 a resolution
73c3ge6B_



not modelled 11.1 33 PDB header:oxidoreductase
Chain: B: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (exig_2970) from exiguobacterium sibiricum 255-15 at 1.85 a3 resolution
74c2hg5D_



not modelled 11.1 20 PDB header:membrane protein
Chain: D: PDB Molecule:kcsa channel;
PDBTitle: cs+ complex of a k channel with an amide to ester substitution in the2 selectivity filter
75c3bm2B_



not modelled 11.1 10 PDB header:oxidoreductase
Chain: B: PDB Molecule:protein ydja;
PDBTitle: crystal structure of a minimal nitroreductase ydja from escherichia2 coli k12 with and without fmn cofactor
76c2bbjB_



not modelled 11.0 11 PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
77c1bhbA_



not modelled 10.9 38 PDB header:photoreceptor
Chain: A: PDB Molecule:bacteriorhodopsin;
PDBTitle: three-dimensional structure of (1-71) bacterioopsin2 solubilized in methanol-chloroform and sds micelles3 determined by 15n-1h heteronuclear nmr spectroscopy
78c1zrtD_



not modelled 10.8 29 PDB header:oxidoreductase/metal transport
Chain: D: PDB Molecule:cytochrome c1;
PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound
79c2kjfA_



not modelled 10.8 50 PDB header:antimicrobial protein
Chain: A: PDB Molecule:carnocyclin-a;
PDBTitle: the solution structure of the circular bacteriocin2 carnocyclin a (ccla)
80c3hj9A_



not modelled 10.8 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of a putative nitroreductase (reut_a1228) from2 ralstonia eutropha jmp134 at 2.00 a resolution
81d1zcha1



not modelled 10.7 25 Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
82c3eofB_



not modelled 10.7 50 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase (yp_213212.1) from2 bacteroides fragilis nctc 9343 at 1.99 a resolution
83c2f95B_



not modelled 10.6 40 PDB header:membrane protein
Chain: B: PDB Molecule:sensory rhodopsin ii transducer;
PDBTitle: m intermediate structure of sensory rhodopsin ii/transducer complex in2 combination with the ground state structure
84c3koqC_



not modelled 10.4 38 PDB header:oxidoreductase
Chain: C: PDB Molecule:nitroreductase family protein;
PDBTitle: crystal structure of a nitroreductase family protein (cd3355) from2 clostridium difficile 630 at 1.58 a resolution
85c2ktrA_



not modelled 10.2 29 PDB header:signaling protein, transport protein
Chain: A: PDB Molecule:sequestosome-1;
PDBTitle: nmr structure of p62 pb1 dimer determined based on pcs
86c3bemA_



not modelled 10.2 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative nad(p)h nitroreductase ydfn;
PDBTitle: crystal structure of putative nitroreductase ydfn (2632848) from2 bacillus subtilis at 1.65 a resolution
87c3e10B_



not modelled 10.0 50 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative nadh oxidase;
PDBTitle: crystal structure of putative nadh oxidase (np_348178.1)2 from clostridium acetobutylicum at 1.40 a resolution
88d1dd3a1



not modelled 9.8 24 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
89c1x3nA_



not modelled 9.7 23 PDB header:transferase
Chain: A: PDB Molecule:propionate kinase;
PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium
90c3ol4B_



not modelled 9.7 50 PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c
91d1pbua_



not modelled 9.7 25 Fold:Ferredoxin-like
Superfamily:eEF1-gamma domain
Family:eEF1-gamma domain
92c2b2hA_



not modelled 9.7 5 PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter;
PDBTitle: ammonium transporter amt-1 from a. fulgidus (as)
93c2j5dA_



not modelled 9.6 23 PDB header:membrane protein
Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: nmr structure of bnip3 transmembrane domain in lipid2 bicelles
94c2i7hE_



not modelled 9.6 25 PDB header:oxidoreductase
Chain: E: PDB Molecule:nitroreductase-like family protein;
PDBTitle: crystal structure of the nitroreductase-like family protein from2 bacillus cereus
95d1h2sb_



not modelled 9.5 40 Fold:Transmembrane helix hairpin
Superfamily:Htr2 transmembrane domain-like
Family:Htr2 transmembrane domain-like
96c1h2sB_



not modelled 9.5 40 PDB header:membrane protein
Chain: B: PDB Molecule:sensory rhodopsin ii transducer;
PDBTitle: molecular basis of transmenbrane signalling by sensory2 rhodopsin ii-transducer complex
97d1mgta2



not modelled 9.4 25 Fold:Ribonuclease H-like motif
Superfamily:Methylated DNA-protein cysteine methyltransferase domain
Family:Methylated DNA-protein cysteine methyltransferase domain
98c3iddA_



not modelled 9.3 4 PDB header:isomerase
Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent
PDBTitle: cofactor-independent phosphoglycerate mutase from2 thermoplasma acidophilum dsm 1728
99c3hoiA_



not modelled 9.2 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nitroreductase bf3017;
PDBTitle: crystal structure of fmn-dependent nitroreductase bf3017 from2 bacteroides fragilis nctc 9343 (yp_212631.1) from bacteroides3 fragilis nctc 9343 at 1.55 a resolution

Binding site prediction 

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