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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1r19B_

Fold library idPDB HeaderMoleculeTitle
c1r19B_PDB header: cell adhesionChain: B: PDB Molecule: fibrinogen-binding protein sdrg;PDBTitle: crystal structure analysis of s.epidermidis adhesin sdrg2 binding to fibrinogen (apo structure)


Added to library: Tue Mar 16 13:04:33 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SNVNHLIKVTDQSITEGYDDSDGIIKAHDAENLIYDVTFEVDDKVKSGTMTVNIDKNTVPSDLTDSFAIP
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Known secondary structure (DSSP)


GGGB


S
SS
TTTTTT

B
SS






TTS
SS
S




 .........80.........90.........100.........110.........120.........130.........140
Sequence KIKDNSGEIIATGTYDNTNKQITYTFTYENIKAHLKLTSYIDKSKVPNNNTKLDVEYKTALSSVNKTITV
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Known secondary structure (DSSP)

TTS
TTTT


S

TTT

STTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence EYQKPNENRTANLQSMFTNIDTKNHTVEQTIYINPLRYSAKETNVNISGNGDEGSTIIDDSTIIKVYKVG
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Known secondary structure (DSSP)



TTTTTTSTT



B
SS
B
B
STT


 .........220.........230.........240.........250.........260.........270.........280
Sequence DNQNLPDSNRIYDYSEYEDVTNDDYAQLGNNNDVNINFGNIDSPYIIKVISKYDPNKYTTIQQTVTMQTT
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Known secondary structure (DSSP) TT



TTS

S
GGGS


GGG
SSS
S






 .........290.........300
Sequence INEYTGEFRTASYDNTIAFS
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Known secondary structure (DSSP) TTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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