PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c1qleB_

Fold library id	PDB Header	Molecule	Title
c1qleB_	PDB header: oxidoreductase/immune system	Chain: B: PDB Molecule: cytochrome c oxidase polypeptide ii;	PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit2 cytochrome c oxidase in the completely oxidized state3 complexed with an antibody fv fragment

Links to external resources
Added to library: Tue Mar 16 12:56:22 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q D V L G D L P V I G K P V N G G M N F Q P A S S P L A H D Q Q W L D H F V L Y I I T A V T I F V C L L L L I C I V R F N R R A N P V P A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
B
S
T T
S
S
S S S T T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F T H N T P I E V I W T L V P V L I L V A I G A F S L P I L F R S Q E M P N D P D L V I K A I G H Q W Y W S Y E Y P N D G V A F D A L M L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
S
B
S S S B
S S S
B
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K E A L A D A G Y S E D E Y L L A T D N P V V V P V G K K V L V Q V T A T D V I H A W T I P A F A V K Q D A V P G R I A Q L W F S V D Q E G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T G G G T
G G G S S S
B S S
T T S
B S S S
T T T T
T T
B
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . .

Sequence V Y F G Q C S E L C G I N H A Y M P I V V K A V S Q E K Y E A W L A G A K E E F A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S T T S S S
T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	D	V	L	G	D	L	P	V	I	G	K	P	V	N	G	G	M	N	F	Q	P	A	S	S	P	L	A	H	D	Q	Q	W	L	D	H	F	V	L	Y	I	I	T	A	V	T	I	F	V	C	L	L	L	L	I	C	I	V	R	F	N	R	R	A	N	P	V	P	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T		S			B		S				T	T			S		S				S																																			S	S	T	T	T		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	T	H	N	T	P	I	E	V	I	W	T	L	V	P	V	L	I	L	V	A	I	G	A	F	S	L	P	I	L	F	R	S	Q	E	M	P	N	D	P	D	L	V	I	K	A	I	G	H	Q	W	Y	W	S	Y	E	Y	P	N	D	G	V	A	F	D	A	L	M	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																			S			S	S		S							B		S	S	S	B					S	S	S						B		B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	E	A	L	A	D	A	G	Y	S	E	D	E	Y	L	L	A	T	D	N	P	V	V	V	P	V	G	K	K	V	L	V	Q	V	T	A	T	D	V	I	H	A	W	T	I	P	A	F	A	V	K	Q	D	A	V	P	G	R	I	A	Q	L	W	F	S	V	D	Q	E	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	T	G	G	G	T			G	G	G	S	S	S		B	S	S						T	T	S								B	S	S	S							T	T	T	T							T	T					B					S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Sequence	V	Y	F	G	Q	C	S	E	L	C	G	I	N	H	A	Y	M	P	I	V	V	K	A	V	S	Q	E	K	Y	E	A	W	L	A	G	A	K	E	E	F	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S			S	T	T	S	S	S																								T