Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP37653
DateWed Jan 25 15:20:53 GMT 2012
Unique Job IDfaa0464bcb518b55

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2z86D_
Top template information
PDB header:transferase
Chain: D: PDB Molecule:chondroitin synthase;
PDBTitle: crystal structure of chondroitin polymerase from2 escherichia coli strain k4 (k4cp) complexed with udp-glcua3 and udp
Confidence and coverage
Confidence:100.0% Coverage: 27%
237 residues ( 27% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
366 residues ( 42%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSILTRWLLIPPVNARLIGRYRDYRRHGASAFSATLGCFWMILAWIFIPLEHPRWQRIRA
Secondary structure 
SS confidence 
Disorder  ????
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  EHKNLYPHINASRPRPLDPVRYLIQTCWLLIGASRKETPKPRRRAFSGLQNIRGRYHQWM
Secondary structure 
SS confidence 
Disorder 
?????
???????????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  NELPERVSHKTQHLDEKKELGHLSAGARRLILGIIVTFSLILALICVTQPFNPLAQFIFL
Secondary structure 
SS confidence 
Disorder 
???????????????????????
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  MLLWGVALIVRRMPGRFSALMLIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAE
Secondary structure 
SS confidence 
Disorder 
??????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  TYAWIVLVLGYFQVVWPLNRQPVPLPKDMSLWPSVDIFVPTYNEDLNVVKNTIYASLGID
Secondary structure 
SS confidence 
Disorder 
??????????????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  WPKDKLNIWILDDGGREEFRQFAQNVGVKYIARTTHEHAKAGNINNALKYAKGEFVSIFD
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  CDHVPTRSFLQMTMGWFLKEKQLAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQ
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  DGNDMWDATFFCGSCAVIRRKPLDEIGGIAVETVTEDAHTSLRLHRRGYTSAYMRIPQAA
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  GLATESLSAHIGQRIRWARGMVQIFRLDNPLTGKGLKFAQRLCYVNAMFHFLSGIPRLIF
Secondary structure 
SS confidence 
Disorder 
??????
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  LTAPLAFLLLHAYIIYAPALMIALFVLPHMIHASLTNSKIQGKYRHSFWSEIYETVLAWY
Secondary structure 
SS confidence 
Disorder 
???????
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  IAPPTLVALINPHKGKFNVTAKGGLVEEEYVDWVISRPYIFLVLLNLVGVAVGIWRYFYG
Secondary structure 
SS confidence 
Disorder 
?
??
??????
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  PPTEMLTVVVSMVWVFYNLIVLGGAVAVSVESKQVRRSHRVEMTMPAAIAREDGHLFSCT
Secondary structure 
SS confidence 
Disorder 
?
???????
??
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  VQDFSDGGLGIKINGQAQILEGQKVNLLLKRGQQEYVFPTQVARVMGNEVGLKLMPLTTQ
Secondary structure 
SS confidence 
Disorder 
??
?
?
Disorder confidence 
 
   .........790.........800.........810.........820.........830.........840
Sequence  QHIDFVQCTFARADTWALWQDSYPEDKPLESLLDILKLGFRGYRHLAEFAPSSVKGIFRV
Secondary structure 
SS confidence 
Disorder 
?
????????
?
Disorder confidence 
 
   .........850.........860.........870..
Sequence  LTSLVSWVVSFIPRRPERSETAQPSDQALAQQ
Secondary structure 
SS confidence 
Disorder  ?
??????
?
?????????????????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2z86 chain D

3D model

Region: 256 - 494
Aligned: 237
Modelled: 239
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: D: PDB Molecule:chondroitin synthase;
PDBTitle: crystal structure of chondroitin polymerase from2 escherichia coli strain k4 (k4cp) complexed with udp-glcua3 and udp

Phyre2

PDB 2ffu chain A

3D model

Region: 257 - 499
Aligned: 242
Modelled: 243
Confidence: 100.0%
Identity: 12%
PDB header:transferase
Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2;
PDBTitle: crystal structure of human ppgalnact-2 complexed with udp2 and ea2

Phyre2

PDB 3f1y chain C

3D model

Region: 273 - 515
Aligned: 233
Modelled: 243
Confidence: 100.0%
Identity: 14%
PDB header:transferase
Chain: C: PDB Molecule:mannosyl-3-phosphoglycerate synthase;
PDBTitle: mannosyl-3-phosphoglycerate synthase from rubrobacter xylanophilus

Phyre2

PDB 1xhb chain A

3D model

Region: 257 - 480
Aligned: 223
Modelled: 224
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1;
PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1

Phyre2

PDB 2d7i chain A

3D model

Region: 263 - 480
Aligned: 203
Modelled: 204
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 10;
PDBTitle: crsytal structure of pp-galnac-t10 with udp, galnac and mn2+

Phyre2

PDB 1xhb chain A domain 2

3D model

Region: 255 - 514
Aligned: 256
Modelled: 260
Confidence: 100.0%
Identity: 16%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain

Phyre2

PDB 3ckv chain A

3D model

Region: 273 - 503
Aligned: 215
Modelled: 231
Confidence: 99.9%
Identity: 13%
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a mycobacterial protein

Phyre2

PDB 1qg8 chain A

3D model

Region: 273 - 500
Aligned: 210
Modelled: 214
Confidence: 99.9%
Identity: 20%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: Spore coat polysaccharide biosynthesis protein SpsA

Phyre2

PDB 3bcv chain A

3D model

Region: 273 - 475
Aligned: 188
Modelled: 203
Confidence: 99.9%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:putative glycosyltransferase protein;
PDBTitle: crystal structure of a putative glycosyltransferase from bacteroides2 fragilis

Phyre2

PDB 1omx chain B

3D model

Region: 272 - 517
Aligned: 228
Modelled: 246
Confidence: 99.8%
Identity: 13%
PDB header:transferase
Chain: B: PDB Molecule:alpha-1,4-n-acetylhexosaminyltransferase extl2;
PDBTitle: crystal structure of mouse alpha-1,4-n-2 acetylhexosaminyltransferase (extl2)

Phyre2

PDB 1omz chain A

3D model

Region: 273 - 517
Aligned: 229
Modelled: 235
Confidence: 99.8%
Identity: 13%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: Exostosin

Phyre2

PDB 2qgi chain A

3D model

Region: 279 - 499
Aligned: 209
Modelled: 221
Confidence: 99.7%
Identity: 11%
PDB header:transferase
Chain: A: PDB Molecule:atp synthase subunits region orf 6;
PDBTitle: the udp complex structure of the sixth gene product of the f1-atpase2 operon of rhodobacter blasticus

Phyre2

PDB 2bo4 chain A domain 1

3D model

Region: 277 - 472
Aligned: 182
Modelled: 196
Confidence: 99.2%
Identity: 11%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: MGS-like

Phyre2

PDB 1ywu chain A

3D model

Region: 695 - 795
Aligned: 100
Modelled: 101
Confidence: 99.2%
Identity: 13%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pa4608;
PDBTitle: solution nmr structure of pseudomonas aeruginosa protein pa4608.2 northeast structural genomics target pat7

Phyre2

PDB 1ywu chain A domain 1

3D model

Region: 695 - 795
Aligned: 100
Modelled: 101
Confidence: 99.2%
Identity: 13%
Fold: Split barrel-like
Superfamily: PilZ domain-like
Family: PilZ domain

Phyre2

PDB 3kyg chain B

3D model

Region: 690 - 789
Aligned: 99
Modelled: 100
Confidence: 98.8%
Identity: 15%
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein vca0042;
PDBTitle: crystal structure of vca0042 (l135r) complexed with c-di-gmp

Phyre2

PDB 2rde chain B

3D model

Region: 690 - 789
Aligned: 99
Modelled: 100
Confidence: 98.8%
Identity: 15%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein vca0042;
PDBTitle: crystal structure of vca0042 complexed with c-di-gmp

Phyre2

PDB 2rde chain A domain 1

3D model

Region: 698 - 791
Aligned: 93
Modelled: 94
Confidence: 98.6%
Identity: 16%
Fold: Split barrel-like
Superfamily: PilZ domain-like
Family: PilZ domain

Phyre2

PDB 1fo8 chain A

3D model

Region: 273 - 451
Aligned: 158
Modelled: 164
Confidence: 98.5%
Identity: 15%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: N-acetylglucosaminyltransferase I

Phyre2

PDB 1pzt chain A

3D model

Region: 265 - 471
Aligned: 153
Modelled: 159
Confidence: 98.4%
Identity: 21%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: beta 1,4 galactosyltransferase (b4GalT1)

Phyre2
1
c2z86D_
2
c2ffuA_
3
c3f1yC_
4
c1xhbA_
5
c2d7iA_
6
d1xhba2
7
c3ckvA_
8
d1qg8a_
9
c3bcvA_
10
c1omxB_
11
d1omza_
12
c2qgiA_
13
d2bo4a1
14
c1ywuA_
15
d1ywua1
16
c3kygB_
17
c2rdeB_
18
d2rdea1
19
d1fo8a_
20
d1pzta_
21
22
23
24
25
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2z86D_
100.0 21 PDB header:transferase
Chain: D: PDB Molecule:chondroitin synthase;
PDBTitle: crystal structure of chondroitin polymerase from2 escherichia coli strain k4 (k4cp) complexed with udp-glcua3 and udp
2c2ffuA_
100.0 12 PDB header:transferase
Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2;
PDBTitle: crystal structure of human ppgalnact-2 complexed with udp2 and ea2
3c3f1yC_
100.0 14 PDB header:transferase
Chain: C: PDB Molecule:mannosyl-3-phosphoglycerate synthase;
PDBTitle: mannosyl-3-phosphoglycerate synthase from rubrobacter xylanophilus
4c1xhbA_
100.0 15 PDB header:transferase
Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1;
PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1
5c2d7iA_
100.0 16 PDB header:transferase
Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 10;
PDBTitle: crsytal structure of pp-galnac-t10 with udp, galnac and mn2+
6d1xhba2
100.0 16 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
7c3ckvA_
99.9 13 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a mycobacterial protein
8d1qg8a_
99.9 20 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Spore coat polysaccharide biosynthesis protein SpsA
9c3bcvA_
99.9 14 PDB header:transferase
Chain: A: PDB Molecule:putative glycosyltransferase protein;
PDBTitle: crystal structure of a putative glycosyltransferase from bacteroides2 fragilis
10c1omxB_
99.8 13 PDB header:transferase
Chain: B: PDB Molecule:alpha-1,4-n-acetylhexosaminyltransferase extl2;
PDBTitle: crystal structure of mouse alpha-1,4-n-2 acetylhexosaminyltransferase (extl2)
11d1omza_
99.8 13 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Exostosin
12c2qgiA_
99.7 11 PDB header:transferase
Chain: A: PDB Molecule:atp synthase subunits region orf 6;
PDBTitle: the udp complex structure of the sixth gene product of the f1-atpase2 operon of rhodobacter blasticus
13d2bo4a1
99.2 11 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:MGS-like
14c1ywuA_
99.2 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pa4608;
PDBTitle: solution nmr structure of pseudomonas aeruginosa protein pa4608.2 northeast structural genomics target pat7
15d1ywua1
99.2 13 Fold:Split barrel-like
Superfamily:PilZ domain-like
Family:PilZ domain
16c3kygB_
98.8 15 PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein vca0042;
PDBTitle: crystal structure of vca0042 (l135r) complexed with c-di-gmp
17c2rdeB_
98.8 15 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein vca0042;
PDBTitle: crystal structure of vca0042 complexed with c-di-gmp
18d2rdea1
98.6 16 Fold:Split barrel-like
Superfamily:PilZ domain-like
Family:PilZ domain
19d1fo8a_
98.5 15 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:N-acetylglucosaminyltransferase I
20d1pzta_
98.4 21 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:beta 1,4 galactosyltransferase (b4GalT1)
21c2gjgA_
not modelled 98.2 13 PDB header:motor protein
Chain: A: PDB Molecule:hypothetical protein pp4397;
PDBTitle: crystal structure of a pilz-containing protein (pp4397) from2 pseudomonas putida kt2440 at 2.25 a resolution
22c3lw6A_
not modelled 96.9 19 PDB header:transferase
Chain: A: PDB Molecule:beta-4-galactosyltransferase 7;
PDBTitle: crystal structure of drosophila beta1,4-galactosyltransferase-7
23c3cnrA_
not modelled 96.8 13 PDB header:unknown function
Chain: A: PDB Molecule:type iv fimbriae assembly protein;
PDBTitle: crystal structure of pilz (xac1133) from xanthomonas2 axonopodis pv citri
24c3ph1C_
not modelled 96.5 17 PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: the crystal structure of a pathogenic protein from the xanthomonas2 campestris reveals a new tetrameric pilz domain self-assembled via a3 unusual helical bundle
25c2wvmA_
not modelled 96.4 23 PDB header:transferase
Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase;
PDBTitle: h309a mutant of mannosyl-3-phosphoglycerate synthase from2 thermus thermophilus hb27 in complex with3 gdp-alpha-d-mannose and mg(ii)
26d1vh3a_
not modelled 96.1 11 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
27c2zu8A_
not modelled 96.0 28 PDB header:transferase
Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase;
PDBTitle: crystal structure of mannosyl-3-phosphoglycerate synthase2 from pyrococcus horikoshii
28c3okrA_
not modelled 95.4 9 PDB header:transferase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase;
PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd)
29c2xwlB_
not modelled 95.1 12 PDB header:transferase
Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase;
PDBTitle: crystal structure of ispd from mycobacterium smegmatis in complex2 with ctp and mg
30c2wawA_
not modelled 94.8 10 PDB header:unknown function
Chain: A: PDB Molecule:moba relate protein;
PDBTitle: crystal structure of mycobacterium tuberculosis rv0371c2 homolog from mycobacterium sp. strain jc1
31c1w57A_
not modelled 94.8 15 PDB header:transferase
Chain: A: PDB Molecule:ispd/ispf bifunctional enzyme;
PDBTitle: structure of the bifunctional ispdf from campylobacter2 jejuni containing zn
32d1i52a_
not modelled 92.3 11 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
33c2xmhB_
not modelled 91.6 13 PDB header:transferase
Chain: B: PDB Molecule:ctp-inositol-1-phosphate cytidylyltransferase;
PDBTitle: the x-ray structure of ctp:inositol-1-phosphate2 cytidylyltransferase from archaeoglobus fulgidus
34c3polA_
not modelled 91.5 8 PDB header:transferase
Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase;
PDBTitle: 2.3 angstrom crystal structure of 3-deoxy-manno-octulosonate2 cytidylyltransferase (kdsb) from acinetobacter baumannii.
35c2px7A_
not modelled 91.3 11 PDB header:transferase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate
PDBTitle: crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase from thermus thermophilus hb8
36d2oi6a2
not modelled 91.3 10 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:UDP-glucose pyrophosphorylase
37c3d5nB_
not modelled 91.0 13 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:q97w15_sulso;
PDBTitle: crystal structure of the q97w15_sulso protein from2 sulfolobus solfataricus. nesg target ssr125.
38c1jylC_
not modelled 91.0 13 PDB header:transferase
Chain: C: PDB Molecule:ctp:phosphocholine cytidylytransferase;
PDBTitle: catalytic mechanism of ctp:phosphocholine2 cytidylytransferase from streptococcus pneumoniae (licc)
39c3tqdA_
not modelled 90.7 13 PDB header:transferase
Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase;
PDBTitle: structure of the 3-deoxy-d-manno-octulosonate cytidylyltransferase2 (kdsb) from coxiella burnetii
40c2we9A_
not modelled 89.9 12 PDB header:unknown function
Chain: A: PDB Molecule:moba-related protein;
PDBTitle: crystal structure of rv0371c from mycobacterium2 tuberculosis h37rv
41d1w77a1
not modelled 89.5 9 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
42d1fxoa_
not modelled 89.5 11 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:glucose-1-phosphate thymidylyltransferase
43d1vgwa_
not modelled 89.4 10 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
44c3ngwA_
not modelled 88.5 11 PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis protein a
PDBTitle: crystal structure of molybdopterin-guanine dinucleotide biosynthesis2 protein a from archaeoglobus fulgidus, northeast structural genomics3 consortium target gr189
45c2d0jD_
not modelled 88.5 18 PDB header:transferase
Chain: D: PDB Molecule:galactosylgalactosylxylosylprotein 3-beta-
PDBTitle: crystal structure of human glcat-s apo form
46d1v82a_
not modelled 87.7 19 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:1,3-glucuronyltransferase
47d1w55a1
not modelled 87.5 14 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
48c3oamD_
not modelled 87.3 10 PDB header:transferase
Chain: D: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase;
PDBTitle: crystal structure of cytidylyltransferase from vibrio cholerae
49d1vpaa_
not modelled 87.2 11 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
50d1h5ra_
not modelled 86.5 12 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:glucose-1-phosphate thymidylyltransferase
51d1jyka_
not modelled 85.8 12 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
52c3okrC_
not modelled 85.0 10 PDB header:transferase
Chain: C: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase;
PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd)
53d1iina_
not modelled 84.6 11 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:glucose-1-phosphate thymidylyltransferase
54c1ga8A_
not modelled 83.5 16 PDB header:transferase
Chain: A: PDB Molecule:galactosyl transferase lgtc;
PDBTitle: crystal structure of galacosyltransferase lgtc in complex2 with donor and acceptor sugar analogs.
55d1ga8a_
not modelled 83.5 16 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Galactosyltransferase LgtC
56c3f1cB_
not modelled 83.1 9 PDB header:transferase
Chain: B: PDB Molecule:putative 2-c-methyl-d-erythritol 4-phosphate
PDBTitle: crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase from listeria monocytogenes
57c2oi6A_
not modelled 83.0 8 PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: e. coli glmu- complex with udp-glcnac, coa and glcn-1-po4
58d1vica_
not modelled 81.5 11 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
59c2x5sB_
not modelled 79.7 18 PDB header:transferase
Chain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase;
PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state.
60c2vshB_
not modelled 76.8 12 PDB header:transferase
Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate
PDBTitle: synthesis of cdp-activated ribitol for teichoic acid2 precursors in streptococcus pneumoniae
61c2j0bA_
not modelled 75.2 16 PDB header:transferase
Chain: A: PDB Molecule:beta-1,3-n-acetylglucosaminyltransferase manic fringe;
PDBTitle: structure of the catalytic domain of mouse manic fringe in2 complex with udp and manganese
62d1lvwa_
not modelled 72.8 9 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:glucose-1-phosphate thymidylyltransferase
63d1eyra_
not modelled 71.7 14 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
64c2cu2A_
not modelled 70.6 14 PDB header:transferase
Chain: A: PDB Molecule:putative mannose-1-phosphate guanylyl transferase;
PDBTitle: crystal structure of mannose-1-phosphate geranyltransferase from2 thermus thermophilus hb8
65c2v0hA_
not modelled 69.2 18 PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: characterization of substrate binding and catalysis of the2 potential antibacterial target n-acetylglucosamine-1-3 phosphate uridyltransferase (glmu)
66c3tztB_
not modelled 68.9 9 PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase family 8;
PDBTitle: the structure of a protein in glycosyl transferase family 8 from2 anaerococcus prevotii.
67c1hm8A_
not modelled 68.9 7 PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase;
PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a
68c3hl3A_
not modelled 68.4 7 PDB header:transferase
Chain: A: PDB Molecule:glucose-1-phosphate thymidylyltransferase;
PDBTitle: 2.76 angstrom crystal structure of a putative glucose-1-phosphate2 thymidylyltransferase from bacillus anthracis in complex with a3 sucrose.
69d1e5ka_
not modelled 67.7 10 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Molybdenum cofactor biosynthesis protein MobA
70c2qh5B_
not modelled 67.5 7 PDB header:isomerase
Chain: B: PDB Molecule:mannose-6-phosphate isomerase;
PDBTitle: crystal structure of mannose-6-phosphate isomerase from helicobacter2 pylori
71d1mc3a_
not modelled 65.9 10 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:glucose-1-phosphate thymidylyltransferase
72d3cu0a1
not modelled 64.2 16 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:1,3-glucuronyltransferase
73c1fwyA_
not modelled 63.1 8 PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase;
PDBTitle: crystal structure of n-acetylglucosamine 1-phosphate2 uridyltransferase bound to udp-glcnac
74c2y6pC_
not modelled 63.1 3 PDB header:transferase
Chain: C: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase;
PDBTitle: evidence for a two-metal-ion-mechanism in the2 kdo-cytidylyltransferase kdsb
75c3brkX_
not modelled 61.0 9 PDB header:transferase
Chain: X: PDB Molecule:glucose-1-phosphate adenylyltransferase;
PDBTitle: crystal structure of adp-glucose pyrophosphorylase from2 agrobacterium tumefaciens
76c2e3dB_
not modelled 59.5 10 PDB header:transferase
Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase;
PDBTitle: crystal structure of e. coli glucose-1-phosphate2 uridylyltransferase
77d1qwja_
not modelled 58.5 11 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
78c3hz7A_
not modelled 55.8 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the sira-like protein (dsy4693) from2 desulfitobacterium hafniense, northeast structural genomics3 consortium target dhr2a
79c2ux8G_
not modelled 55.1 8 PDB header:transferase
Chain: G: PDB Molecule:glucose-1-phosphate uridylyltransferase;
PDBTitle: crystal structure of sphingomonas elodea atcc 31461 glucose-2 1-phosphate uridylyltransferase in complex with glucose-3 1-phosphate.
80d1h7ea_
not modelled 52.9 9 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
81c3louB_
not modelled 51.5 15 PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution
82d1g97a2
not modelled 49.5 10 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:UDP-glucose pyrophosphorylase
83c2bkdN_
not modelled 47.8 14 PDB header:nuclear protein
Chain: N: PDB Molecule:fragile x mental retardation 1 protein;
PDBTitle: structure of the n-terminal domain of fragile x mental2 retardation protein
84c3rsbB_
not modelled 41.5 9 PDB header:transferase
Chain: B: PDB Molecule:adenosylcobinamide-phosphate guanylyltransferase;
PDBTitle: structure of the archaeal gtp:adocbi-p guanylyltransferase (coby) from2 methanocaldococcus jannaschii
85c3n0vD_
not modelled 40.3 14 PDB header:hydrolase
Chain: D: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution
86d1pava_
not modelled 38.0 12 Fold:IF3-like
Superfamily:SirA-like
Family:SirA-like
87d2ix0a3
not modelled 35.8 29 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
88c1zcyA_
not modelled 35.8 8 PDB header:transferase
Chain: A: PDB Molecule:glycogenin-1;
PDBTitle: apo form of a mutant of glycogenin in which asp159 is replaced by ser
89c2e8bA_
not modelled 35.6 21 PDB header:biosynthetic protein
Chain: A: PDB Molecule:probable molybdopterin-guanine dinucleotide biosynthesis
PDBTitle: crystal structure of the putative protein (aq1419) from aquifex2 aeolicus vf5
90c2pa4B_
not modelled 35.2 10 PDB header:transferase
Chain: B: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase;
PDBTitle: crystal structure of udp-glucose pyrophosphorylase from corynebacteria2 glutamicum in complex with magnesium and udp-glucose
91d1ll2a_
not modelled 34.6 8 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Glycogenin
92d1je3a_
not modelled 32.9 12 Fold:IF3-like
Superfamily:SirA-like
Family:SirA-like
93c3nrbD_
not modelled 32.8 10 PDB header:hydrolase
Chain: D: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution
94c2vs1A_
not modelled 32.6 16 PDB header:transferase
Chain: A: PDB Molecule:uncharacterized rna methyltransferase pyrab10780;
PDBTitle: the crystal structure of pyrococcus abyssi trna (uracil-54,2 c5)-methyltransferase in complex with s-adenosyl-l-3 homocysteine
95d1yp2a2
not modelled 31.9 10 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:glucose-1-phosphate thymidylyltransferase
96d2cu2a2
not modelled 31.1 16 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:mannose-1-phosphate guanylyl transferase
97d1vh1a_
not modelled 31.1 7 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
98c1fftG_
not modelled 29.3 18 PDB header:oxidoreductase
Chain: G: PDB Molecule:ubiquinol oxidase;
PDBTitle: the structure of ubiquinol oxidase from escherichia coli
99c3d98A_
not modelled 28.5 5 PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: crystal structure of glmu from mycobacterium tuberculosis, ligand-free2 form
100c2ag1A_
not modelled 28.4 17 PDB header:lyase
Chain: A: PDB Molecule:benzaldehyde lyase;
PDBTitle: crystal structure of benzaldehyde lyase (bal)- semet
101c2rreA_
not modelled 28.0 22 PDB header:nuclear protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure and function of the n-terminal nucleolin binding domain of2 nuclear valocine containing protein like 2 (nvl2) harboring a3 nucleolar localization signal
102c3pnnA_
not modelled 27.5 10 PDB header:transferase
Chain: A: PDB Molecule:conserved domain protein;
PDBTitle: the crystal structure of a glycosyltransferase from porphyromonas2 gingivalis w83
103d1nxza1
not modelled 27.1 11 Fold:PUA domain-like
Superfamily:PUA domain-like
Family:YggJ N-terminal domain-like
104d1ybha1
not modelled 27.0 11 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
105c1yp3C_
not modelled 26.9 13 PDB header:transferase
Chain: C: PDB Molecule:glucose-1-phosphate adenylyltransferase small
PDBTitle: crystal structure of potato tuber adp-glucose2 pyrophosphorylase in complex with atp
106c2vbgB_
not modelled 25.4 10 PDB header:lyase
Chain: B: PDB Molecule:branched-chain alpha-ketoacid decarboxylase;
PDBTitle: the complex structure of the branched-chain keto acid2 decarboxylase (kdca) from lactococcus lactis with 2r-1-3 hydroxyethyl-deazathdp
107c3o1lB_
not modelled 25.1 7 PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution
108d1jdqa_
not modelled 24.7 17 Fold:IF3-like
Superfamily:SirA-like
Family:SirA-like
109d1pj3a2
not modelled 23.0 22 Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Malic enzyme N-domain
110c2qkxA_
not modelled 21.2 5 PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: n-acetyl glucosamine 1-phosphate uridyltransferase from mycobacterium2 tuberculosis complex with n-acetyl glucosamine 1-phosphate
111c3zq4C_
not modelled 21.2 26 PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease j 1;
PDBTitle: unusual, dual endo- and exo-nuclease activity in the degradosome2 explained by crystal structure analysis of rnase j1
112d1dcja_
not modelled 20.8 16 Fold:IF3-like
Superfamily:SirA-like
Family:SirA-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0