PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3kygB_

Fold library id	PDB Header	Molecule	Title
c3kygB_	PDB header: unknown function	Chain: B: PDB Molecule: putative uncharacterized protein vca0042;	PDBTitle: crystal structure of vca0042 (l135r) complexed with c-di-gmp

Links to external resources
Added to library: Sat Aug 28 17:30:47 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S K T V S T I N S T D A L A M V E H S S E L T L S I T T P V G T K F V C R T P F I G T H T D K F L L V E M P K I S A D D L Q Y F F Q E G F W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
T T
T T
T T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence M N I R A I S P R G E G A L I H F R S Q L M H I L Q E P V P M A F L S I P N T M Q V S Q R R K E P R F E L N L A G K V L F D E H R G D C E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
S S S
S S
S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R D L S R S G C R F I T P P L G K T Y Q V G D L V A L E I F S D L R G T K T F P P L T G K I C N L Q R S L H H A R Y G L E F N E E G R N N A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S
T T
T T
S
S S

. . . . . . . . . 220 . . . . . . .

Sequence K N L L A Q L K F N G T K L T L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	K	T	V	S	T	I	N	S	T	D	A	L	A	M	V	E	H	S	S	E	L	T	L	S	I	T	T	P	V	G	T	K	F	V	C	R	T	P	F	I	G	T	H	T	D	K	F	L	L	V	E	M	P	K	I	S	A	D	D	L	Q	Y	F	F	Q	E	G	F	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	S		T	T										T	T															T	T	T																				T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	M	N	I	R	A	I	S	P	R	G	E	G	A	L	I	H	F	R	S	Q	L	M	H	I	L	Q	E	P	V	P	M	A	F	L	S	I	P	N	T	M	Q	V	S	Q	R	R	K	E	P	R	F	E	L	N	L	A	G	K	V	L	F	D	E	H	R	G	D	C	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	T	T																S	S	S									S							S		S	S														T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	D	L	S	R	S	G	C	R	F	I	T	P	P	L	G	K	T	Y	Q	V	G	D	L	V	A	L	E	I	F	S	D	L	R	G	T	K	T	F	P	P	L	T	G	K	I	C	N	L	Q	R	S	L	H	H	A	R	Y	G	L	E	F	N	E	E	G	R	N	N	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S								T	T	S					T	T											T	T						S													S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Sequence	K	N	L	L	A	Q	L	K	F	N	G	T	K	L	T	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T					S	S	S