Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	L	D	D	K	S	L	F	L	D	A	M	E	D	V	Q	P	L	K	R	A	T	D	V	H	W	H	P	T	R	N	Q	R	A	P	Q	R	I	D	T	L	Q	L	D	N	F	L	T	T	G	F	L	D	I	I	P	L	S	Q
Secondary structure
SS confidence
Disorder		?	?	?	?										?		?	?					?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	L	E	F	R	R	E	G	L	Q	H	G	V	L	D	K	L	R	S	G	K	Y	P	Q	Q	A	S	L	N	L	L	R	Q	P	V	E	E	C	R	K	M	V	F	S	F	I	Q	Q	A	L	A	D	G	L	R	N	V	L	I	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		H	G	K	G	R	D	D	K	S	H	A	N	I	V	R	S	Y	V	A	R	W	L	T	E	F	D	D	V	Q	A	Y	C	T	A	L	P	H	H	G	G	S	G	A	C	Y	V	A	L	R	K	T	A	Q	A	K	Q	E	N	W	E
Secondary structure
SS confidence
Disorder							?	?	?	?	?	?	?	?																																							?			?		?	?
Disorder confidence
		.	.	.	.	.	.	.
Sequence		R	H	A	K	R	S	R
Secondary structure
SS confidence
Disorder				?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3qd7 chain X Region: 40 - 170 Aligned: 131 Modelled: 131 Confidence: 100.0% Identity: 100% PDB header:hydrolase Chain: X: PDB Molecule:uncharacterized protein ydal; PDBTitle: crystal structure of ydal, a stand-alone small muts-related protein2 from escherichia coli Phyre2 PDB 2zqe chain A Region: 87 - 169 Aligned: 77 Modelled: 83 Confidence: 99.9% Identity: 31% PDB header:dna binding protein Chain: A: PDB Molecule:muts2 protein; PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2 Phyre2 PDB 2d9i chain A domain 1 Region: 85 - 169 Aligned: 78 Modelled: 85 Confidence: 99.7% Identity: 19% Fold: IF3-like Superfamily: SMR domain-like Family: Smr domain Phyre2 PDB 2vkc chain A Region: 76 - 169 Aligned: 87 Modelled: 94 Confidence: 99.7% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:nedd4-binding protein 2; PDBTitle: solution structure of the b3bp smr domain Phyre2 PDB 3no4 chain A Region: 92 - 146 Aligned: 51 Modelled: 55 Confidence: 66.7% Identity: 10% PDB header:hydrolase Chain: A: PDB Molecule:creatinine amidohydrolase; PDBTitle: crystal structure of a creatinine amidohydrolase (npun_f1913) from2 nostoc punctiforme pcc 73102 at 2.00 a resolution Phyre2 PDB 1v7z chain A Region: 92 - 141 Aligned: 50 Modelled: 50 Confidence: 66.5% Identity: 10% Fold: Creatininase Superfamily: Creatininase Family: Creatininase Phyre2 PDB 1jdq chain A Region: 80 - 170 Aligned: 76 Modelled: 91 Confidence: 50.8% Identity: 11% Fold: IF3-like Superfamily: SirA-like Family: SirA-like Phyre2 PDB 2fmo chain A Region: 99 - 122 Aligned: 24 Modelled: 24 Confidence: 43.7% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:5,10-methylenetetrahydrofolate reductase; PDBTitle: ala177val mutant of e. coli methylenetetrahydrofolate2 reductase Phyre2 PDB 1x0l chain B Region: 79 - 148 Aligned: 69 Modelled: 70 Confidence: 38.5% Identity: 10% PDB header:oxidoreductase Chain: B: PDB Molecule:homoisocitrate dehydrogenase; PDBTitle: crystal structure of tetrameric homoisocitrate dehydrogenase from an2 extreme thermophile, thermus thermophilus Phyre2 PDB 3lub chain E Region: 92 - 128 Aligned: 37 Modelled: 37 Confidence: 36.6% Identity: 16% PDB header:hydrolase Chain: E: PDB Molecule:putative creatinine amidohydrolase; PDBTitle: crystal structure of putative creatinine amidohydrolase2 (yp_211512.1) from bacteroides fragilis nctc 9343 at 2.11 a3 resolution Phyre2 PDB 1pyy chain A domain 2 Region: 89 - 104 Aligned: 16 Modelled: 16 Confidence: 35.9% Identity: 6% Fold: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Phyre2 PDB 1b5t chain A Region: 99 - 122 Aligned: 24 Modelled: 24 Confidence: 35.7% Identity: 13% Fold: TIM beta/alpha-barrel Superfamily: FAD-linked oxidoreductase Family: Methylenetetrahydrofolate reductase Phyre2 PDB 1v93 chain A Region: 99 - 122 Aligned: 24 Modelled: 24 Confidence: 33.4% Identity: 29% Fold: TIM beta/alpha-barrel Superfamily: FAD-linked oxidoreductase Family: Methylenetetrahydrofolate reductase Phyre2 PDB 2odk chain A domain 1 Region: 90 - 123 Aligned: 33 Modelled: 33 Confidence: 33.1% Identity: 12% Fold: YefM-like Superfamily: YefM-like Family: YefM-like Phyre2 PDB 2obb chain A domain 1 Region: 102 - 145 Aligned: 36 Modelled: 44 Confidence: 31.3% Identity: 3% Fold: HAD-like Superfamily: HAD-like Family: BT0820-like Phyre2 PDB 1k25 chain A domain 2 Region: 89 - 104 Aligned: 16 Modelled: 16 Confidence: 30.7% Identity: 6% Fold: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Phyre2 PDB 3ouv chain A Region: 89 - 104 Aligned: 16 Modelled: 13 Confidence: 29.4% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:serine/threonine protein kinase; PDBTitle: semet derivative of l512m mutant of pasta domain 3 of mycobacterium2 tuberculosis pknb Phyre2 PDB 1d3y chain A Region: 100 - 152 Aligned: 48 Modelled: 53 Confidence: 26.7% Identity: 15% Fold: DNA topoisomerase IV, alpha subunit Superfamily: DNA topoisomerase IV, alpha subunit Family: DNA topoisomerase IV, alpha subunit Phyre2 PDB 3e0j chain F Region: 92 - 122 Aligned: 31 Modelled: 31 Confidence: 26.2% Identity: 13% PDB header:transferase Chain: F: PDB Molecule:dna polymerase subunit delta-3; PDBTitle: x-ray structure of the complex of regulatory subunits of2 human dna polymerase delta Phyre2 PDB 1rp5 chain A domain 2 Region: 89 - 105 Aligned: 17 Modelled: 17 Confidence: 24.9% Identity: 6% Fold: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Phyre2 1 c3qd7X_ 2 c2zqeA_ 3 d2d9ia1 4 c2vkcA_ 5 c3no4A_ 6 d1v7za_ 7 d1jdqa_ 8 c2fmoA_ 9 c1x0lB_ 10 c3lubE_ 11 d1pyya2 12 d1b5ta_ 13 d1v93a_ 14 d2odka1 15 d2obba1 16 d1k25a2 17 c3ouvA_ 18 d1d3ya_ 19 c3e0jF_ 20 d1rp5a2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3qd7X_ 100.0 100 PDB header:hydrolase Chain: X: PDB Molecule:uncharacterized protein ydal; PDBTitle: crystal structure of ydal, a stand-alone small muts-related protein2 from escherichia coli 2 c2zqeA_ 99.9 31 PDB header:dna binding protein Chain: A: PDB Molecule:muts2 protein; PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2 3 d2d9ia1 99.7 19 Fold:IF3-like Superfamily:SMR domain-like Family:Smr domain 4 c2vkcA_ 99.7 16 PDB header:hydrolase Chain: A: PDB Molecule:nedd4-binding protein 2; PDBTitle: solution structure of the b3bp smr domain 5 c3no4A_ 66.7 10 PDB header:hydrolase Chain: A: PDB Molecule:creatinine amidohydrolase; PDBTitle: crystal structure of a creatinine amidohydrolase (npun_f1913) from2 nostoc punctiforme pcc 73102 at 2.00 a resolution 6 d1v7za_ 66.5 10 Fold:Creatininase Superfamily:Creatininase Family:Creatininase 7 d1jdqa_ 50.8 11 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 8 c2fmoA_ 43.7 13 PDB header:oxidoreductase Chain: A: PDB Molecule:5,10-methylenetetrahydrofolate reductase; PDBTitle: ala177val mutant of e. coli methylenetetrahydrofolate2 reductase 9 c1x0lB_ 38.5 10 PDB header:oxidoreductase Chain: B: PDB Molecule:homoisocitrate dehydrogenase; PDBTitle: crystal structure of tetrameric homoisocitrate dehydrogenase from an2 extreme thermophile, thermus thermophilus 10 c3lubE_ 36.6 16 PDB header:hydrolase Chain: E: PDB Molecule:putative creatinine amidohydrolase; PDBTitle: crystal structure of putative creatinine amidohydrolase2 (yp_211512.1) from bacteroides fragilis nctc 9343 at 2.11 a3 resolution 11 d1pyya2 35.9 6 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 12 d1b5ta_ 35.7 13 Fold:TIM beta/alpha-barrel Superfamily:FAD-linked oxidoreductase Family:Methylenetetrahydrofolate reductase 13 d1v93a_ 33.4 29 Fold:TIM beta/alpha-barrel Superfamily:FAD-linked oxidoreductase Family:Methylenetetrahydrofolate reductase 14 d2odka1 33.1 12 Fold:YefM-like Superfamily:YefM-like Family:YefM-like 15 d2obba1 31.3 3 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 16 d1k25a2 30.7 6 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 17 c3ouvA_ 29.4 19 PDB header:transferase Chain: A: PDB Molecule:serine/threonine protein kinase; PDBTitle: semet derivative of l512m mutant of pasta domain 3 of mycobacterium2 tuberculosis pknb 18 d1d3ya_ 26.7 15 Fold:DNA topoisomerase IV, alpha subunit Superfamily:DNA topoisomerase IV, alpha subunit Family:DNA topoisomerase IV, alpha subunit 19 c3e0jF_ 26.2 13 PDB header:transferase Chain: F: PDB Molecule:dna polymerase subunit delta-3; PDBTitle: x-ray structure of the complex of regulatory subunits of2 human dna polymerase delta 20 d1rp5a2 24.9 6 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 21 d1xpja_ not modelled 24.7 11 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein VC0232 22 c3fmxX_ not modelled 24.5 6 PDB header:oxidoreductase Chain: X: PDB Molecule:tartrate dehydrogenase/decarboxylase; PDBTitle: crystal structure of tartrate dehydrogenase from pseudomonas2 putida complexed with nadh 23 d2a6qb1 not modelled 23.8 15 Fold:YefM-like Superfamily:YefM-like Family:YefM-like 24 c3fdjA_ not modelled 23.6 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:degv family protein; PDBTitle: the structure of a degv family protein from eubacterium eligens. 25 c2q2eA_ not modelled 21.5 13 PDB header:isomerase Chain: A: PDB Molecule:type ii dna topoisomerase vi subunit a; PDBTitle: crystal structure of the topoisomerase vi holoenzyme from2 methanosarcina mazei 26 c3aysA_ not modelled 21.1 16 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase; PDBTitle: gh5 endoglucanase from a ruminal fungus in complex with cellotriose 27 d1dcja_ not modelled 20.9 15 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 28 c3e0fA_ not modelled 20.6 22 PDB header:hydrolase Chain: A: PDB Molecule:putative metal-dependent phosphoesterase; PDBTitle: crystal structure of a putative metal-dependent phosphoesterase2 (bad_1165) from bifidobacterium adolescentis atcc 15703 at 2.40 a3 resolution 29 d2c0ha1 not modelled 20.3 7 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 30 c3blxL_ not modelled 20.0 12 PDB header:oxidoreductase Chain: L: PDB Molecule:isocitrate dehydrogenase [nad] subunit 2; PDBTitle: yeast isocitrate dehydrogenase (apo form) 31 d2c2la2 not modelled 18.8 17 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 32 c3pzqA_ not modelled 18.4 12 PDB header:hydrolase Chain: A: PDB Molecule:mannan endo-1,4-beta-mannosidase. glycosyl hydrolase family PDBTitle: structure of the hyperthermostable endo-1,4-beta-d-mannanase from2 thermotoga petrophila rku-1 with maltose and glycerol 33 d1r57a_ not modelled 18.0 22 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 34 c3k5wA_ not modelled 17.1 21 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori 35 c2odkD_ not modelled 16.9 13 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein; PDBTitle: putative prevent-host-death protein from nitrosomonas europaea 36 d1m65a_ not modelled 16.1 22 Fold:7-stranded beta/alpha barrel Superfamily:PHP domain-like Family:PHP domain 37 c1mwoA_ not modelled 15.8 25 PDB header:hydrolase Chain: A: PDB Molecule:alpha amylase; PDBTitle: crystal structure analysis of the hyperthermostable2 pyrocoocus woesei alpha-amylase 38 c1jdaA_ not modelled 15.4 5 PDB header:hydrolase Chain: A: PDB Molecule:1,4-alpha maltotetrahydrolase; PDBTitle: maltotetraose-forming exo-amylase 39 c2g7zB_ not modelled 15.2 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein spy1493; PDBTitle: conserved degv-like protein of unknown function from streptococcus2 pyogenes m1 gas binds long-chain fatty acids 40 d1e43a2 not modelled 14.9 5 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 41 c1bplA_ not modelled 14.8 10 PDB header:glycosyltransferase Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase; PDBTitle: glycosyltransferase 42 c1m7xC_ not modelled 14.8 37 PDB header:transferase Chain: C: PDB Molecule:1,4-alpha-glucan branching enzyme; PDBTitle: the x-ray crystallographic structure of branching enzyme 43 c2wjeA_ not modelled 14.4 13 PDB header:hydrolase Chain: A: PDB Molecule:tyrosine-protein phosphatase cpsb; PDBTitle: crystal structure of the tyrosine phosphatase cps4b from2 steptococcus pneumoniae tigr4. 44 d1pava_ not modelled 14.4 8 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 45 c1jaeA_ not modelled 14.2 10 PDB header:glycosidase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: structure of tenebrio molitor larval alpha-amylase 46 d1g8fa3 not modelled 14.0 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ATP sulfurylase C-terminal domain 47 c3ndyA_ not modelled 13.8 15 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase d; PDBTitle: the structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans 48 c2zbkA_ not modelled 13.6 22 PDB header:isomerase Chain: A: PDB Molecule:type ii dna topoisomerase vi subunit a; PDBTitle: crystal structure of an intact type ii dna topoisomerase:2 insights into dna transfer mechanisms 49 c3mmwB_ not modelled 13.5 37 PDB header:hydrolase Chain: B: PDB Molecule:endoglucanase; PDBTitle: crystal structure of endoglucanase cel5a from the hyperthermophilic2 thermotoga maritima 50 d1hx0a2 not modelled 13.5 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 51 c3ll4B_ not modelled 13.4 12 PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized protein ykr043c; PDBTitle: structure of the h13a mutant of ykr043c in complex with fructose-1,6-2 bisphosphate 52 c2ns6A_ not modelled 13.2 20 PDB header:hydrolase Chain: A: PDB Molecule:mobilization protein a; PDBTitle: crystal structure of the minimal relaxase domain of moba2 from plasmid r1162 53 d1gcya2 not modelled 12.6 5 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 54 d1vjza_ not modelled 12.5 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 55 d1ceoa_ not modelled 12.4 19 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 56 d1avaa2 not modelled 12.3 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 57 d3dhpa2 not modelled 12.2 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 58 c1jd7A_ not modelled 12.2 15 PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: crystal structure analysis of the mutant k300r of2 pseudoalteromonas haloplanctis alpha-amylase 59 d1gjwa2 not modelled 12.1 19 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 60 c1bagA_ not modelled 11.9 10 PDB header:alpha-amylase Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase; PDBTitle: alpha-amylase from bacillus subtilis complexed with2 maltopentaose 61 c2kueA_ not modelled 11.8 13 PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase pknb; PDBTitle: nmr structure of the pasta domain 2 and 3 of mycobacterium2 tuberculosis of pknb 62 c3k35D_ not modelled 11.8 18 PDB header:hydrolase Chain: D: PDB Molecule:nad-dependent deacetylase sirtuin-6; PDBTitle: crystal structure of human sirt6 63 c3eozB_ not modelled 11.6 21 PDB header:isomerase Chain: B: PDB Molecule:putative phosphoglycerate mutase; PDBTitle: crystal structure of phosphoglycerate mutase from plasmodium2 falciparum, pfd0660w 64 d2csba1 not modelled 11.4 6 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 65 c1q14A_ not modelled 11.3 14 PDB header:hydrolase Chain: A: PDB Molecule:hst2 protein; PDBTitle: structure and autoregulation of the yeast hst2 homolog of sir2 66 c3icgD_ not modelled 11.1 19 PDB header:hydrolase Chain: D: PDB Molecule:endoglucanase d; PDBTitle: crystal structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans 67 c3m07A_ not modelled 11.1 37 PDB header:unknown function Chain: A: PDB Molecule:putative alpha amylase; PDBTitle: 1.4 angstrom resolution crystal structure of putative alpha2 amylase from salmonella typhimurium. 68 c2kudA_ not modelled 10.9 6 PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase pknb; PDBTitle: nmr structure of the pasta domain 1 and 2 of mycobacterium2 tuberculosis of pknb 69 d1g94a2 not modelled 10.8 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 70 c3qy6A_ not modelled 10.7 9 PDB header:hydrolase Chain: A: PDB Molecule:tyrosine-protein phosphatase ywqe; PDBTitle: crystal structures of ywqe from bacillus subtilis and cpsb from2 streptococcus pneumoniae, unique metal-dependent tyrosine3 phosphatases 71 c3blpX_ not modelled 10.7 10 PDB header:hydrolase Chain: X: PDB Molecule:alpha-amylase 1; PDBTitle: role of aromatic residues in human salivary alpha-amylase 72 d1jaea2 not modelled 10.7 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 73 d2gjpa2 not modelled 10.6 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 74 c1wpcA_ not modelled 10.6 10 PDB header:hydrolase Chain: A: PDB Molecule:glucan 1,4-alpha-maltohexaosidase; PDBTitle: crystal structure of maltohexaose-producing amylase complexed with2 pseudo-maltononaose 75 c1qhoA_ not modelled 10.6 10 PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: five-domain alpha-amylase from bacillus stearothermophilus,2 maltose/acarbose complex 76 c2yb1A_ not modelled 10.5 15 PDB header:hydrolase Chain: A: PDB Molecule:amidohydrolase; PDBTitle: structure of an amidohydrolase from chromobacterium violaceum (efi2 target efi-500202) with bound mn, amp and phosphate. 77 c2zc3F_ not modelled 10.4 0 PDB header:biosynthetic protein Chain: F: PDB Molecule:penicillin-binding protein 2x; PDBTitle: penicillin-binding protein 2x (pbp 2x) acyl-enzyme complex2 (biapenem) from streptococcus pneumoniae 78 d1m7xa3 not modelled 10.3 37 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 79 c3jugA_ not modelled 10.3 17 PDB header:hydrolase Chain: A: PDB Molecule:beta-mannanase; PDBTitle: crystal structure of endo-beta-1,4-mannanase from the alkaliphilic2 bacillus sp. n16-5 80 c2x4bA_ not modelled 10.3 23 PDB header:hydrolase Chain: A: PDB Molecule:limit dextrinase; PDBTitle: barley limit dextrinase in complex with beta-cyclodextrin 81 d1ua7a2 not modelled 10.3 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 82 d1ob0a2 not modelled 10.1 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 83 c2ya0A_ not modelled 10.1 14 PDB header:hydrolase Chain: A: PDB Molecule:putative alkaline amylopullulanase; PDBTitle: catalytic module of the multi-modular glycogen-degrading2 pneumococcal virulence factor spua 84 c1ehaA_ not modelled 10.1 21 PDB header:hydrolase Chain: A: PDB Molecule:glycosyltrehalose trehalohydrolase; PDBTitle: crystal structure of glycosyltrehalose trehalohydrolase2 from sulfolobus solfataricus 85 c3lupA_ not modelled 9.9 19 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:degv family protein; PDBTitle: crystal structure of fatty acid binding degv family protein sag13422 from streptococcus agalactiae 86 d2isba1 not modelled 9.9 31 Fold:The "swivelling" beta/beta/alpha domain Superfamily:FumA C-terminal domain-like Family:FumA C-terminal domain-like 87 c3amlA_ not modelled 9.8 21 PDB header:transferase Chain: A: PDB Molecule:os06g0726400 protein; PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l 88 c3bmwA_ not modelled 9.7 15 PDB header:transferase Chain: A: PDB Molecule:cyclomaltodextrin glucanotransferase; PDBTitle: cyclodextrin glycosyl transferase from thermoanerobacterium2 thermosulfurigenes em1 mutant s77p complexed with a maltoheptaose3 inhibitor 89 d1uf3a_ not modelled 9.6 18 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:TT1561-like 90 c1cygA_ not modelled 9.4 15 PDB header:glycosyltransferase Chain: A: PDB Molecule:cyclodextrin glucanotransferase; PDBTitle: cyclodextrin glucanotransferase (e.c.2.4.1.19) (cgtase) 91 d1cyga4 not modelled 9.4 16 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 92 d1bqca_ not modelled 9.4 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 93 c1bf2A_ not modelled 9.3 10 PDB header:hydrolase Chain: A: PDB Molecule:isoamylase; PDBTitle: structure of pseudomonas isoamylase 94 d1ltqa1 not modelled 9.3 8 Fold:HAD-like Superfamily:HAD-like Family:phosphatase domain of polynucleotide kinase 95 d2pb1a1 not modelled 9.3 16 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 96 d2a6qa1 not modelled 9.2 15 Fold:YefM-like Superfamily:YefM-like Family:YefM-like 97 d1uuqa_ not modelled 9.1 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 98 c1uz4A_ not modelled 9.1 12 PDB header:hydrolase Chain: A: PDB Molecule:man5a; PDBTitle: common inhibition of beta-glucosidase and beta-mannosidase2 by isofagomine lactam reflects different conformational3 intineraries for glucoside and mannoside hydrolysis 99 d1mxga2 not modelled 9.1 25 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0