Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	G	K	A	L	Q	D	F	V	I	D	K	I	D	D	L	K	G	Q	D	I	I	A	L	D	V	Q	G	K	S	S	I	T	D	C	M	I	I	C	T	G	T	S	S	R	H	V	M	S	I	A	D	H	V	V	Q	E	S	R
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Sequence		A	A	G	L	L	P	L	G	V	E	G	E	N	S	A	D	W	I	V	V	D	L	G	D	V	I	V	H	V	M	Q	E	E	S	R	R	L	Y	E	L	E	K	L	W	S
Secondary structure
SS confidence
Disorder										?	?																													?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3ups chain A Region: 1 - 105 Aligned: 105 Modelled: 105 Confidence: 100.0% Identity: 35% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:iojap-like protein; PDBTitle: crystal structure of iojap-like protein from zymomonas mobilis Phyre2 PDB 2id1 chain A domain 1 Region: 1 - 105 Aligned: 105 Modelled: 104 Confidence: 100.0% Identity: 36% Fold: Nucleotidyltransferase Superfamily: Nucleotidyltransferase Family: Iojap/YbeB-like Phyre2 PDB 2o5a chain A domain 1 Region: 2 - 105 Aligned: 102 Modelled: 104 Confidence: 100.0% Identity: 36% Fold: Nucleotidyltransferase Superfamily: Nucleotidyltransferase Family: Iojap/YbeB-like Phyre2 PDB 2omd chain B Region: 1 - 78 Aligned: 77 Modelled: 78 Confidence: 86.4% Identity: 13% PDB header:lyase Chain: B: PDB Molecule:molybdopterin-converting factor subunit 2; PDBTitle: crystal structure of molybdopterin converting factor subunit 22 (aq_2181) from aquifex aeolicus vf5 Phyre2 PDB 2qie chain A Region: 1 - 78 Aligned: 77 Modelled: 78 Confidence: 74.3% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:molybdopterin-converting factor subunit 2; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z Phyre2 PDB 1fm0 chain E Region: 1 - 78 Aligned: 78 Modelled: 78 Confidence: 69.9% Identity: 12% Fold: alpha/beta-Hammerhead Superfamily: Molybdopterin synthase subunit MoaE Family: Molybdopterin synthase subunit MoaE Phyre2 PDB 1ex9 chain A Region: 10 - 78 Aligned: 57 Modelled: 69 Confidence: 51.8% Identity: 12% Fold: alpha/beta-Hydrolases Superfamily: alpha/beta-Hydrolases Family: Bacterial lipase Phyre2 PDB 1vme chain A domain 1 Region: 2 - 77 Aligned: 75 Modelled: 76 Confidence: 51.4% Identity: 13% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 3b6i chain B Region: 2 - 43 Aligned: 42 Modelled: 42 Confidence: 40.4% Identity: 21% PDB header:flavoprotein Chain: B: PDB Molecule:flavoprotein wrba; PDBTitle: wrba from escherichia coli, native structure Phyre2 PDB 1n0u chain A domain 4 Region: 36 - 101 Aligned: 64 Modelled: 66 Confidence: 39.3% Identity: 8% Fold: Ferredoxin-like Superfamily: EF-G C-terminal domain-like Family: EF-G/eEF-2 domains III and V Phyre2 PDB 2ark chain A domain 1 Region: 2 - 43 Aligned: 42 Modelled: 42 Confidence: 34.9% Identity: 17% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: WrbA-like Phyre2 PDB 2dy1 chain A domain 4 Region: 36 - 101 Aligned: 64 Modelled: 66 Confidence: 29.7% Identity: 11% Fold: Ferredoxin-like Superfamily: EF-G C-terminal domain-like Family: EF-G/eEF-2 domains III and V Phyre2 PDB 3fni chain A Region: 2 - 77 Aligned: 75 Modelled: 76 Confidence: 29.7% Identity: 11% PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a Phyre2 PDB 2bm0 chain A domain 4 Region: 36 - 101 Aligned: 65 Modelled: 66 Confidence: 28.7% Identity: 5% Fold: Ferredoxin-like Superfamily: EF-G C-terminal domain-like Family: EF-G/eEF-2 domains III and V Phyre2 PDB 1e5d chain A domain 1 Region: 2 - 77 Aligned: 75 Modelled: 76 Confidence: 28.0% Identity: 12% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 3hly chain A Region: 2 - 58 Aligned: 56 Modelled: 57 Confidence: 27.4% Identity: 14% PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. Phyre2 PDB 1ycg chain A domain 1 Region: 2 - 77 Aligned: 75 Modelled: 76 Confidence: 25.5% Identity: 5% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1nvj chain A Region: 1 - 62 Aligned: 62 Modelled: 62 Confidence: 20.2% Identity: 13% Fold: alpha/beta-Hammerhead Superfamily: Molybdopterin synthase subunit MoaE Family: Molybdopterin synthase subunit MoaE Phyre2 PDB 1k8k chain D domain 1 Region: 45 - 93 Aligned: 43 Modelled: 49 Confidence: 20.2% Identity: 28% Fold: Secretion chaperone-like Superfamily: Arp2/3 complex subunits Family: Arp2/3 complex subunits Phyre2 PDB 1lk5 chain A domain 2 Region: 52 - 102 Aligned: 51 Modelled: 51 Confidence: 20.1% Identity: 14% Fold: Ferredoxin-like Superfamily: D-ribose-5-phosphate isomerase (RpiA), lid domain Family: D-ribose-5-phosphate isomerase (RpiA), lid domain Phyre2 1 c3upsA_ 2 d2id1a1 3 d2o5aa1 4 c2omdB_ 5 c2qieA_ 6 d1fm0e_ 7 d1ex9a_ 8 d1vmea1 9 c3b6iB_ 10 d1n0ua4 11 d2arka1 12 d2dy1a4 13 c3fniA_ 14 d2bm0a4 15 d1e5da1 16 c3hlyA_ 17 d1ycga1 18 d1nvja_ 19 d1k8kd1 20 d1lk5a2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3upsA_ 100.0 35 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:iojap-like protein; PDBTitle: crystal structure of iojap-like protein from zymomonas mobilis 2 d2id1a1 100.0 36 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Iojap/YbeB-like 3 d2o5aa1 100.0 36 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Iojap/YbeB-like 4 c2omdB_ 86.4 13 PDB header:lyase Chain: B: PDB Molecule:molybdopterin-converting factor subunit 2; PDBTitle: crystal structure of molybdopterin converting factor subunit 22 (aq_2181) from aquifex aeolicus vf5 5 c2qieA_ 74.3 13 PDB header:transferase Chain: A: PDB Molecule:molybdopterin-converting factor subunit 2; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z 6 d1fm0e_ 69.9 12 Fold:alpha/beta-Hammerhead Superfamily:Molybdopterin synthase subunit MoaE Family:Molybdopterin synthase subunit MoaE 7 d1ex9a_ 51.8 12 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase 8 d1vmea1 51.4 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 9 c3b6iB_ 40.4 21 PDB header:flavoprotein Chain: B: PDB Molecule:flavoprotein wrba; PDBTitle: wrba from escherichia coli, native structure 10 d1n0ua4 39.3 8 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:EF-G/eEF-2 domains III and V 11 d2arka1 34.9 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 12 d2dy1a4 29.7 11 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:EF-G/eEF-2 domains III and V 13 c3fniA_ 29.7 11 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 14 d2bm0a4 28.7 5 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:EF-G/eEF-2 domains III and V 15 d1e5da1 28.0 12 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 16 c3hlyA_ 27.4 14 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 17 d1ycga1 25.5 5 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 18 d1nvja_ 20.2 13 Fold:alpha/beta-Hammerhead Superfamily:Molybdopterin synthase subunit MoaE Family:Molybdopterin synthase subunit MoaE 19 d1k8kd1 20.2 28 Fold:Secretion chaperone-like Superfamily:Arp2/3 complex subunits Family:Arp2/3 complex subunits 20 d1lk5a2 20.1 14 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 21 d2fz5a1 not modelled 19.4 10 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 22 d1xpja_ not modelled 19.3 10 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein VC0232 23 c2zkiH_ not modelled 18.7 15 PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) 24 c2wp4A_ not modelled 16.8 15 PDB header:transferase Chain: A: PDB Molecule:molybdopterin-converting factor subunit 2 1; PDBTitle: crystal structure of rv3119 from mycobacterium tuberculosis 25 c3b8hA_ not modelled 15.0 8 PDB header:biosynthetic protein/transferase Chain: A: PDB Molecule:elongation factor 2; PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex 26 d2fcra_ not modelled 14.9 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 27 d1mp9a1 not modelled 14.2 15 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 28 c2xexA_ not modelled 13.9 8 PDB header:translation Chain: A: PDB Molecule:elongation factor g; PDBTitle: crystal structure of staphylococcus aureus elongation factor2 g 29 c2pjmA_ not modelled 13.4 22 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii 30 d2obba1 not modelled 13.0 5 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 31 c3dnpA_ not modelled 12.6 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:stress response protein yhax; PDBTitle: crystal structure of stress response protein yhax from bacillus2 subtilis 32 c3f4aA_ not modelled 12.4 14 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein ygr203w; PDBTitle: structure of ygr203w, a yeast protein tyrosine phosphatase2 of the rhodanese family 33 d1llda1 not modelled 11.4 10 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 34 c1lk5C_ not modelled 11.4 14 PDB header:isomerase Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase; PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii 35 d2z1ca1 not modelled 10.7 23 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 36 d2ot2a1 not modelled 10.7 19 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 37 c2c5iP_ not modelled 10.6 50 PDB header:protein transport Chain: P: PDB Molecule:vacuolar protein sorting protein 51; PDBTitle: n-terminal domain of tlg1 complexed with n-terminus of2 vps51 in distorted conformation 38 d5nula_ not modelled 10.4 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 39 c2c5kP_ not modelled 10.3 50 PDB header:protein transport Chain: P: PDB Molecule:vacuolar protein sorting protein 51; PDBTitle: n-terminal domain of tlg1 complexed with n-terminus of2 vps51 40 d1wzca1 not modelled 10.3 5 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 41 c1vmeB_ not modelled 10.3 13 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 42 d1e4ea1 not modelled 10.2 23 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain 43 d1ydga_ not modelled 9.8 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 44 c3o2eA_ not modelled 9.4 11 PDB header:unknown function Chain: A: PDB Molecule:bola-like protein; PDBTitle: crystal structure of a bol-like protein from babesia bovis 45 c3hheA_ not modelled 9.3 15 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from bartonella2 henselae 46 c2kz0A_ not modelled 9.2 6 PDB header:transcription Chain: A: PDB Molecule:bola family protein; PDBTitle: solution structure of a bola protein (ech_0303) from ehrlichia2 chaffeensis. seattle structural genomics center for infectious3 disease target ehcha.10365.a 47 d1t57a_ not modelled 8.7 14 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:MTH1675-like 48 c2rdo7_ not modelled 8.6 13 PDB header:ribosome Chain: 7: PDB Molecule:elongation factor g; PDBTitle: 50s subunit with ef-g(gdpnp) and rrf bound 49 c2q9uB_ not modelled 8.4 8 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 50 c1ychD_ not modelled 8.1 11 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 51 c1zn0B_ not modelled 7.9 5 PDB header:translation/biosynthetic protein/rna Chain: B: PDB Molecule:elongation factor g; PDBTitle: coordinates of rrf and ef-g fitted into cryo-em map of the2 50s subunit bound with both ef-g (gdpnp) and rrf 52 c3tqtB_ not modelled 7.7 19 PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: structure of the d-alanine-d-alanine ligase from coxiella burnetii 53 c3f6sI_ not modelled 7.7 10 PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers 54 d1nh8a2 not modelled 7.7 13 Fold:Ferredoxin-like Superfamily:GlnB-like Family:ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain 55 c2zf8A_ not modelled 7.5 16 PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty 56 c1e5dA_ not modelled 7.4 13 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 57 d2fvta1 not modelled 7.4 19 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 58 c3cioA_ not modelled 7.3 13 PDB header:signaling protein, transferase Chain: A: PDB Molecule:tyrosine-protein kinase etk; PDBTitle: the kinase domain of escherichia coli tyrosine kinase etk 59 d2qwxa1 not modelled 7.3 26 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 60 d2fi9a1 not modelled 7.2 11 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 61 c2hnbA_ not modelled 7.2 7 PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin 62 c3l7oB_ not modelled 7.2 15 PDB header:isomerase Chain: B: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159 63 c3o3nB_ not modelled 7.1 19 PDB header:lyase Chain: B: PDB Molecule:beta-subunit 2-hydroxyacyl-coa dehydratase; PDBTitle: (r)-2-hydroxyisocaproyl-coa dehydratase in complex with its substrate2 (r)-2-hydroxyisocaproyl-coa 64 d2hd3a1 not modelled 7.0 25 Fold:OB-fold Superfamily:EutN/CcmL-like Family:EutN/CcmL-like 65 c3pgvB_ not modelled 6.9 26 PDB header:hydrolase Chain: B: PDB Molecule:haloacid dehalogenase-like hydrolase; PDBTitle: crystal structure of a haloacid dehalogenase-like hydrolase2 (kpn_04322) from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at3 2.39 a resolution 66 d1nh2a1 not modelled 6.9 10 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 67 c3bzqA_ not modelled 6.9 18 PDB header:signaling protein/transcription Chain: A: PDB Molecule:nitrogen regulatory protein p-ii; PDBTitle: high resolution crystal structure of nitrogen regulatory protein2 (rv2919c) of mycobacterium tuberculosis 68 d1j98a_ not modelled 6.9 17 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:Autoinducer-2 production protein LuxS 69 d1kqfa1 not modelled 6.8 18 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 70 c1olsB_ not modelled 6.8 10 PDB header:oxidoreductase Chain: B: PDB Molecule:2-oxoisovalerate dehydrogenase beta subunit; PDBTitle: roles of his291-alpha and his146-beta' in the reductive2 acylation reaction catalyzed by human branched-chain3 alpha-ketoacid dehydrogenase 71 c3niwA_ not modelled 6.5 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:haloacid dehalogenase-like hydrolase; PDBTitle: crystal structure of a haloacid dehalogenase-like hydrolase from2 bacteroides thetaiotaomicron 72 d1umya_ not modelled 6.5 32 Fold:TIM beta/alpha-barrel Superfamily:Homocysteine S-methyltransferase Family:Homocysteine S-methyltransferase 73 d2a5la1 not modelled 6.5 10 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 74 d2bfdb2 not modelled 6.4 10 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 75 d2cfxa2 not modelled 6.4 9 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 76 d1qnaa1 not modelled 6.3 17 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 77 d1uj4a2 not modelled 6.3 12 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 78 c2bm0A_ not modelled 6.3 5 PDB header:elongation factor Chain: A: PDB Molecule:elongation factor g; PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant2 mutant t84a 79 d1nrwa_ not modelled 6.2 26 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 80 d1nf2a_ not modelled 6.1 5 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 81 d1x4ma1 not modelled 6.0 17 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 82 d1ny8a_ not modelled 6.0 11 Fold:Alpha-lytic protease prodomain-like Superfamily:BolA-like Family:BolA-like 83 c3gygA_ not modelled 5.8 15 PDB header:hydrolase Chain: A: PDB Molecule:ntd biosynthesis operon putative hydrolase ntdb; PDBTitle: crystal structure of yhjk (haloacid dehalogenase-like hydrolase2 protein) from bacillus subtilis 84 d3d3ra1 not modelled 5.8 19 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 85 c3d0oA_ not modelled 5.7 10 PDB header:oxidoreductase Chain: A: PDB Molecule:l-lactate dehydrogenase 1; PDBTitle: crystal structure of lactate dehydrogenase from2 staphylococcus aureus 86 c1uj6A_ not modelled 5.7 13 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of thermus thermophilus ribose-5-phosphate isomerase2 complexed with arabinose-5-phosphate 87 d2guma1 not modelled 5.6 26 Fold:Viral glycoprotein ectodomain-like Superfamily:Viral glycoprotein ectodomain-like Family:Glycoprotein B-like 88 d1m7ja2 not modelled 5.5 13 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:D-aminoacylase 89 d1otga_ not modelled 5.5 13 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) 90 c1zosE_ not modelled 5.5 14 PDB header:hydrolase Chain: E: PDB Molecule:5'-methylthioadenosine / s-adenosylhomocysteine PDBTitle: structure of 5'-methylthionadenosine/s-adenosylhomocysteine2 nucleosidase from s. pneumoniae with a transition-state3 inhibitor mt-imma 91 c1byyA_ not modelled 5.4 36 PDB header:membrane protein Chain: A: PDB Molecule:protein (sodium channel alpha-subunit); PDBTitle: sodium channel iia inactivation gate 92 d1iowa1 not modelled 5.4 18 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain 93 c3e5nA_ not modelled 5.3 20 PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: crystal strucutre of d-alanine-d-alanine ligase from2 xanthomonas oryzae pv. oryzae kacc10331 94 d2a6aa1 not modelled 5.1 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:YeaZ-like 95 c1xviA_ not modelled 5.1 15 PDB header:hydrolase Chain: A: PDB Molecule:putative mannosyl-3-phosphoglycerate phosphatase; PDBTitle: crystal structure of yedp, phosphatase-like domain protein2 from escherichia coli k12 96 d1xvia_ not modelled 5.1 15 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 97 c3fojA_ not modelled 5.1 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of ssp1007 from staphylococcus2 saprophyticus subsp. saprophyticus. northeast structural3 genomics target syr101a.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0