Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	N	L	D	V	I	C	I	G	A	A	I	V	D	I	P	L	Q	P	V	S	K	N	I	F	D	V	D	S	Y	P	L	E	R	I	A	M	T	T	G	G	D	A	I	N	E	A	T	I	I	S	R	L	G	H	R	T	A	L
Secondary structure
SS confidence
Disorder		?	?																				?	?	?	?					?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		M	S	R	I	G	K	D	A	A	G	Q	F	I	L	D	H	C	R	K	E	N	I	D	I	Q	S	L	K	Q	D	V	S	I	D	T	S	I	N	V	G	L	V	T	E	D	G	E	R	T	F	V	T	N	R	N	G	S	L	W	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	N	I	D	D	V	D	F	A	R	F	S	Q	A	K	L	L	S	L	A	S	I	F	N	S	P	L	L	D	G	K	A	L	T	E	I	F	T	Q	A	K	A	R	Q	M	I	I	C	A	D	M	I	K	P	R	L	N	E	T	L
Secondary structure
SS confidence
Disorder																								?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		D	D	I	C	E	A	L	S	Y	V	D	Y	L	F	P	N	F	A	E	A	K	L	L	T	G	K	E	T	L	D	E	I	A	D	C	F	L	A	C	G	V	K	T	V	V	I	K	T	G	K	D	G	C	F	I	K	R	G	D	M
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		T	M	K	V	P	A	V	A	G	I	T	A	I	D	T	I	G	A	G	D	N	F	A	S	G	F	I	A	A	L	L	E	G	K	N	L	R	E	C	A	R	F	A	N	A	T	A	A	I	S	V	L	S	V	G	A	T	T	G	V
Secondary structure
SS confidence
Disorder																																																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Sequence		K	N	R	K	L	V	E	Q	L	L	E	E	Y	E	G
Secondary structure
SS confidence
Disorder														?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3in1 chain A Region: 3 - 314 Aligned: 312 Modelled: 305 Confidence: 100.0% Identity: 98% PDB header:transferase Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli Phyre2 PDB 3iq0 chain B Region: 1 - 313 Aligned: 304 Modelled: 313 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: B: PDB Molecule:putative ribokinase ii; PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli Phyre2 PDB 3pl2 chain D Region: 2 - 310 Aligned: 302 Modelled: 309 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution Phyre2 PDB 2pkk chain A Region: 2 - 315 Aligned: 303 Modelled: 314 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine Phyre2 PDB 2rbc chain A Region: 3 - 313 Aligned: 299 Modelled: 307 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens Phyre2 PDB 2qcv chain A Region: 1 - 314 Aligned: 304 Modelled: 314 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase; PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution Phyre2 PDB 2var chain B Region: 4 - 314 Aligned: 304 Modelled: 311 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: crystal structure of sulfolobus solfataricus 2-keto-3-2 deoxygluconate kinase complexed with 2-keto-3-3 deoxygluconate Phyre2 PDB 1rkd chain A Region: 5 - 314 Aligned: 297 Modelled: 300 Confidence: 100.0% Identity: 27% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3b1q chain D Region: 6 - 315 Aligned: 294 Modelled: 304 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine Phyre2 PDB 2c49 chain A Region: 1 - 314 Aligned: 297 Modelled: 308 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:sugar kinase mj0406; PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family Phyre2 PDB 3kzh chain A Region: 2 - 314 Aligned: 300 Modelled: 312 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:probable sugar kinase; PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens Phyre2 PDB 1v19 chain A Region: 1 - 310 Aligned: 296 Modelled: 310 Confidence: 100.0% Identity: 25% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2nwh chain A Region: 1 - 314 Aligned: 302 Modelled: 313 Confidence: 100.0% Identity: 25% PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens Phyre2 PDB 2dcn chain A domain 1 Region: 5 - 313 Aligned: 301 Modelled: 309 Confidence: 100.0% Identity: 18% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 1vm7 chain A Region: 1 - 313 Aligned: 293 Modelled: 304 Confidence: 100.0% Identity: 28% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2fv7 chain A domain 1 Region: 1 - 310 Aligned: 297 Modelled: 305 Confidence: 100.0% Identity: 22% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3go6 chain B Region: 5 - 313 Aligned: 281 Modelled: 290 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:ribokinase rbsk; PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp Phyre2 PDB 1bx4 chain A Region: 1 - 302 Aligned: 299 Modelled: 302 Confidence: 100.0% Identity: 19% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3gbu chain D Region: 6 - 314 Aligned: 292 Modelled: 309 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: D: PDB Molecule:uncharacterized sugar kinase ph1459; PDBTitle: crystal structure of an uncharacterized sugar kinase ph1459 from2 pyrococcus horikoshii in complex with atp Phyre2 PDB 3lki chain A Region: 1 - 313 Aligned: 301 Modelled: 313 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase with bound atp from2 xylella fastidiosa Phyre2 1 c3in1A_ 2 c3iq0B_ 3 c3pl2D_ 4 c2pkkA_ 5 c2rbcA_ 6 c2qcvA_ 7 c2varB_ 8 d1rkda_ 9 c3b1qD_ 10 c2c49A_ 11 c3kzhA_ 12 d1v19a_ 13 c2nwhA_ 14 d2dcna1 15 d1vm7a_ 16 d2fv7a1 17 c3go6B_ 18 d1bx4a_ 19 c3gbuD_ 20 c3lkiA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3in1A_ 100.0 98 PDB header:transferase Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli 2 c3iq0B_ 100.0 20 PDB header:transferase Chain: B: PDB Molecule:putative ribokinase ii; PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli 3 c3pl2D_ 100.0 23 PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution 4 c2pkkA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine 5 c2rbcA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens 6 c2qcvA_ 100.0 22 PDB header:transferase Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase; PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution 7 c2varB_ 100.0 20 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: crystal structure of sulfolobus solfataricus 2-keto-3-2 deoxygluconate kinase complexed with 2-keto-3-3 deoxygluconate 8 d1rkda_ 100.0 27 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 9 c3b1qD_ 100.0 19 PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine 10 c2c49A_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:sugar kinase mj0406; PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family 11 c3kzhA_ 100.0 23 PDB header:transferase Chain: A: PDB Molecule:probable sugar kinase; PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens 12 d1v19a_ 100.0 25 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 13 c2nwhA_ 100.0 25 PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens 14 d2dcna1 100.0 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 15 d1vm7a_ 100.0 28 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 16 d2fv7a1 100.0 22 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 17 c3go6B_ 100.0 18 PDB header:transferase Chain: B: PDB Molecule:ribokinase rbsk; PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp 18 d1bx4a_ 100.0 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 19 c3gbuD_ 100.0 22 PDB header:transferase Chain: D: PDB Molecule:uncharacterized sugar kinase ph1459; PDBTitle: crystal structure of an uncharacterized sugar kinase ph1459 from2 pyrococcus horikoshii in complex with atp 20 c3lkiA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase with bound atp from2 xylella fastidiosa 21 d1tyya_ not modelled 100.0 22 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 22 c2absA_ not modelled 100.0 24 PDB header:signaling protein,transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of t. gondii adenosine kinase complexed2 with amp-pcp 23 d2absa1 not modelled 100.0 24 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 24 c3ktnA_ not modelled 100.0 17 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of a putative 2-keto-3-deoxygluconate2 kinase from enterococcus faecalis 25 d2afba1 not modelled 100.0 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 26 c3i3yB_ not modelled 100.0 24 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae 27 c3cqdB_ not modelled 100.0 17 PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli 28 c3looC_ not modelled 100.0 20 PDB header:transferase Chain: C: PDB Molecule:anopheles gambiae adenosine kinase; PDBTitle: crystal structure of anopheles gambiae adenosine kinase in complex2 with p1,p4-di(adenosine-5) tetraphosphate 29 d2f02a1 not modelled 100.0 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 30 d2abqa1 not modelled 100.0 22 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 31 c2xtbA_ not modelled 100.0 21 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of trypanosoma brucei rhodesiense2 adenosine kinase complexed with activator 32 c3kd6B_ not modelled 100.0 23 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of nucleoside kinase from chlorobium tepidum in2 complex with amp 33 c2jg1C_ not modelled 100.0 18 PDB header:transferase Chain: C: PDB Molecule:tagatose-6-phosphate kinase; PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate 34 c2jg5B_ not modelled 100.0 15 PDB header:transferase Chain: B: PDB Molecule:fructose 1-phosphate kinase; PDBTitle: crystal structure of a putative phosphofructokinase from2 staphylococcus aureus 35 c1tz6B_ not modelled 100.0 22 PDB header:transferase Chain: B: PDB Molecule:putative sugar kinase; PDBTitle: crystal structure of aminoimidazole riboside kinase from2 salmonella enterica complexed with aminoimidazole riboside3 and atp analog 36 c3b3lC_ not modelled 100.0 19 PDB header:transferase Chain: C: PDB Molecule:ketohexokinase; PDBTitle: crystal structures of alternatively-spliced isoforms of human2 ketohexokinase 37 c3lhxA_ not modelled 100.0 21 PDB header:transferase Chain: A: PDB Molecule:ketodeoxygluconokinase; PDBTitle: crystal structure of a ketodeoxygluconokinase (kdgk) from2 shigella flexneri 38 c2qhpA_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase (np_810670.1) from bacteroides2 thetaiotaomicron vpi-5482 at 1.80 a resolution 39 d2ajra1 not modelled 100.0 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 40 c3bf5A_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:ribokinase related protein; PDBTitle: crystal structure of putative ribokinase (10640157) from thermoplasma2 acidophilum at 1.91 a resolution 41 c3julA_ not modelled 100.0 17 PDB header:transferase Chain: A: PDB Molecule:lin2199 protein; PDBTitle: crystal structure of listeria innocua d-tagatose-6-phosphate2 kinase bound with substrate 42 c3hj6B_ not modelled 100.0 28 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: structure of halothermothrix orenii fructokinase (frk) 43 d1vk4a_ not modelled 100.0 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 44 c2ddmA_ not modelled 99.8 19 PDB header:transferase Chain: A: PDB Molecule:pyridoxine kinase; PDBTitle: crystal structure of pyridoxal kinase from the escherichia2 coli pdxk gene at 2.1 a resolution 45 c3mbjA_ not modelled 99.7 15 PDB header:transferase Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase; PDBTitle: crystal structure of a putative phosphomethylpyrimidine kinase2 (bt_4458) from bacteroides thetaiotaomicron vpi-5482 at 2.10 a3 resolution (rhombohedral form) 46 c2i5bC_ not modelled 99.6 16 PDB header:transferase Chain: C: PDB Molecule:phosphomethylpyrimidine kinase; PDBTitle: the crystal structure of an adp complex of bacillus2 subtilis pyridoxal kinase provides evidence for the3 parralel emergence of enzyme activity during evolution 47 c3ibqA_ not modelled 99.5 20 PDB header:transferase Chain: A: PDB Molecule:pyridoxal kinase; PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp 48 d1vi9a_ not modelled 99.5 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 49 d1ub0a_ not modelled 99.5 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 50 d1lhpa_ not modelled 99.5 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 51 d1jxha_ not modelled 99.3 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 52 c3rm5B_ not modelled 99.3 17 PDB header:transferase Chain: B: PDB Molecule:hydroxymethylpyrimidine/phosphomethylpyrimidine kinase PDBTitle: structure of trifunctional thi20 from yeast 53 c3dzvB_ not modelled 98.9 15 PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution 54 d1kyha_ not modelled 98.8 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 55 d1v8aa_ not modelled 98.6 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 56 d1gc5a_ not modelled 98.6 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 57 d1l2la_ not modelled 98.4 13 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 58 d1ua4a_ not modelled 98.4 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 59 d1ekqa_ not modelled 98.4 11 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 60 c2r3bA_ not modelled 98.3 15 PDB header:transferase Chain: A: PDB Molecule:yjef-related protein; PDBTitle: crystal structure of a ribokinase-like superfamily protein (ef1790)2 from enterococcus faecalis v583 at 1.80 a resolution 61 d2ax3a1 not modelled 98.1 13 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 62 c3nm3D_ not modelled 98.0 12 PDB header:transferase Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme; PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes 63 d1u2xa_ not modelled 97.8 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 64 c3drwA_ not modelled 97.8 16 PDB header:transferase Chain: A: PDB Molecule:adp-specific phosphofructokinase; PDBTitle: crystal structure of a phosphofructokinase from pyrococcus2 horikoshii ot3 with amp 65 c3k5wA_ not modelled 97.8 19 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori 66 c2ax3A_ not modelled 97.8 12 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein tm0922; PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution 67 c3bgkA_ not modelled 97.5 13 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of hypothetic protein smu.573 from2 streptococcus mutans 68 d3grsa1 not modelled 87.0 28 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 69 c2zxiC_ not modelled 86.0 38 PDB header:fad-binding protein Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl PDBTitle: structure of aquifex aeolicus gida in the form ii crystal 70 c2eq8E_ not modelled 85.9 34 PDB header:oxidoreductase Chain: E: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp 71 c2xdoC_ not modelled 85.6 19 PDB header:oxidoreductase Chain: C: PDB Molecule:tetx2 protein; PDBTitle: structure of the tetracycline degrading monooxygenase tetx2 from2 bacteroides thetaiotaomicron 72 c1bwcA_ not modelled 82.9 28 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (glutathione reductase); PDBTitle: structure of human glutathione reductase complexed with ajoene2 inhibitor and subversive substrate 73 c3fbsB_ not modelled 79.4 29 PDB header:oxidoreductase Chain: B: PDB Molecule:oxidoreductase; PDBTitle: the crystal structure of the oxidoreductase from agrobacterium2 tumefaciens 74 c2aczA_ not modelled 76.4 44 PDB header:oxidoreductase/electron transport Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with atpenin a52 inhibitor co-crystallized at the ubiquinone binding site 75 c2i0zA_ not modelled 72.7 32 PDB header:oxidoreductase Chain: A: PDB Molecule:nad(fad)-utilizing dehydrogenases; PDBTitle: crystal structure of a fad binding protein from bacillus2 cereus, a putative nad(fad)-utilizing dehydrogenases 76 c3ctyA_ not modelled 72.2 35 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of t. acidophilum thioredoxin reductase 77 c3d8xB_ not modelled 71.8 35 PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin reductase 1; PDBTitle: crystal structure of saccharomyces cerevisiae nadph dependent2 thioredoxin reductase 1 78 d3lada1 not modelled 69.2 48 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 79 c3ic9D_ not modelled 68.6 28 PDB header:oxidoreductase Chain: D: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: the structure of dihydrolipoamide dehydrogenase from colwellia2 psychrerythraea 34h. 80 c3i3lA_ not modelled 68.3 25 PDB header:hydrolase Chain: A: PDB Molecule:alkylhalidase cmls; PDBTitle: crystal structure of cmls, a flavin-dependent halogenase 81 c3l8kB_ not modelled 67.6 32 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrolipoyl dehydrogenase; PDBTitle: crystal structure of a dihydrolipoyl dehydrogenase from2 sulfolobus solfataricus 82 d1neka2 not modelled 67.4 44 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain 83 c1v59B_ not modelled 64.9 31 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+ 84 c2gqfA_ not modelled 64.6 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0933; PDBTitle: crystal structure of flavoprotein hi0933 from haemophilus influenzae2 rd 85 c3atrA_ not modelled 63.9 38 PDB header:oxidoreductase Chain: A: PDB Molecule:conserved archaeal protein; PDBTitle: geranylgeranyl reductase (ggr) from sulfolobus acidocaldarius co-2 crystallized with its ligand 86 d1dxla1 not modelled 62.4 32 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 87 d1v59a1 not modelled 61.9 32 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 88 c3f8rD_ not modelled 61.2 35 PDB header:oxidoreductase Chain: D: PDB Molecule:thioredoxin reductase (trxb-3); PDBTitle: crystal structure of sulfolobus solfataricus thioredoxin2 reductase b3 in complex with two nadp molecules 89 d1gesa1 not modelled 59.7 29 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 90 c3rhaA_ not modelled 59.6 38 PDB header:oxidoreductase Chain: A: PDB Molecule:putrescine oxidase; PDBTitle: the crystal structure of oxidoreductase from arthrobacter aurescens 91 d1vdca1 not modelled 58.9 29 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 92 d1ebda1 not modelled 58.6 26 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 93 d1lpfa1 not modelled 58.4 42 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 94 c2hqmB_ not modelled 57.9 26 PDB header:oxidoreductase Chain: B: PDB Molecule:glutathione reductase; PDBTitle: crystal structure of glutathione reductase glr1 from the yeast2 saccharomyces cerevisiae 95 c3crcB_ not modelled 56.2 16 PDB header:hydrolase Chain: B: PDB Molecule:protein mazg; PDBTitle: crystal structure of escherichia coli mazg, the regulator2 of nutritional stress response 96 d1h6va1 not modelled 56.2 20 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 97 c1ojtA_ not modelled 56.1 23 PDB header:oxidoreductase Chain: A: PDB Molecule:surface protein; PDBTitle: structure of dihydrolipoamide dehydrogenase 98 c3dgzA_ not modelled 55.9 26 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase 2; PDBTitle: crystal structure of mouse mitochondrial thioredoxin reductase, c-2 terminal 3-residue truncation 99 c1zkqA_ not modelled 55.9 26 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase 2, mitochondrial; PDBTitle: crystal structure of mouse thioredoxin reductase type 2 100 c1lvlA_ not modelled 54.4 26 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: the refined structure of pseudomonas putida lipoamide dehydrogenase2 complexed with nad+ at 2.45 angstroms resolution 101 c1ebdB_ not modelled 54.2 26 PDB header:complex (oxidoreductase/transferase) Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: dihydrolipoamide dehydrogenase complexed with the binding2 domain of the dihydrolipoamide acetylase 102 d2i0za1 not modelled 54.1 32 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:HI0933 N-terminal domain-like 103 c2r4jA_ not modelled 53.9 25 PDB header:oxidoreductase Chain: A: PDB Molecule:aerobic glycerol-3-phosphate dehydrogenase; PDBTitle: crystal structure of escherichia coli semet substituted2 glycerol-3-phosphate dehydrogenase in complex with dhap 104 c1geuA_ not modelled 53.5 29 PDB header:oxidoreductase(flavoenzyme) Chain: A: PDB Molecule:glutathione reductase; PDBTitle: anatomy of an engineered nad-binding site 105 d1ryia1 not modelled 52.3 25 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 106 c3g05B_ not modelled 51.6 39 PDB header:rna binding protein Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme PDBTitle: crystal structure of n-terminal domain (2-550) of e.coli mnmg 107 c1yq4A_ not modelled 49.6 36 PDB header:oxidoreductase Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit; PDBTitle: avian respiratory complex ii with 3-nitropropionate and ubiquinone 108 c1qo8A_ not modelled 48.8 29 PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase; PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase 109 c1ryiB_ not modelled 48.0 25 PDB header:oxidoreductase Chain: B: PDB Molecule:glycine oxidase; PDBTitle: structure of glycine oxidase with bound inhibitor glycolate 110 c2r9zB_ not modelled 47.7 32 PDB header:oxidoreductase Chain: B: PDB Molecule:glutathione amide reductase; PDBTitle: glutathione amide reductase from chromatium gracile 111 c3lzxB_ not modelled 45.9 19 PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin--nadp reductase 2; PDBTitle: crystal structure of ferredoxin-nadp+ oxidoreductase from bacillus2 subtilis (form ii) 112 c3o0hA_ not modelled 45.8 39 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione reductase; PDBTitle: crystal structure of glutathione reductase from bartonella henselae 113 c2bs3A_ not modelled 45.8 25 PDB header:oxidoreductase Chain: A: PDB Molecule:quinol-fumarate reductase flavoprotein subunit a; PDBTitle: glu c180 -> gln variant quinol:fumarate reductase from2 wolinella succinogenes 114 c1vdcA_ not modelled 45.7 28 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph dependent thioredoxin reductase; PDBTitle: structure of nadph dependent thioredoxin reductase 115 c1f6mF_ not modelled 45.6 23 PDB header:oxidoreductase Chain: F: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of a complex between thioredoxin2 reductase, thioredoxin, and the nadp+ analog, aadp+ 116 d1kf6a2 not modelled 45.2 34 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain 117 c1kf6A_ not modelled 43.8 35 PDB header:oxidoreductase Chain: A: PDB Molecule:fumarate reductase flavoprotein; PDBTitle: e. coli quinol-fumarate reductase with bound inhibitor hqno 118 c2a87A_ not modelled 43.3 33 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of m. tuberculosis thioredoxin reductase 119 c3allA_ not modelled 43.3 16 PDB header:oxidoreductase Chain: A: PDB Molecule:2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase; PDBTitle: crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid2 oxygenase, mutant y270a 120 d1k0ia1 not modelled 42.7 29 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0