Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	I	R	S	Q	V	G	M	V	L	N	L	D	K	C	I	G	C	H	T	C	S	V	T	C	K	N	V	W	T	G	R	E	G	M	E	Y	A	W	F	N	N	V	E	T	K	P	G	I	G	Y	P	K	N	W	E	D	Q	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																								?	?															?												?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	W	Q	G	G	W	V	R	D	V	N	G	K	I	R	P	R	L	G	N	K	M	G	V	I	T	K	I	F	A	N	P	V	V	P	Q	I	D	D	Y	Y	E	P	F	T	F	D	Y	E	H	L	H	S	A	P	E	G	K	H	I
Secondary structure
SS confidence
Disorder		?	?			?	?				?		?				?			?	?	?								?		?	?	?	?		?	?			?		?	?		?											?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	T	A	R	P	R	S	L	I	D	G	K	R	M	D	K	V	I	W	G	P	N	W	E	E	L	L	G	G	E	F	E	K	R	A	R	D	R	N	F	E	A	M	Q	K	E	M	Y	G	Q	F	E	N	T	F	M	M	Y	L	P
Secondary structure
SS confidence
Disorder																																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		R	L	C	E	H	C	L	N	P	S	C	V	A	T	C	P	S	G	A	I	Y	K	R	E	E	D	G	I	V	L	I	D	Q	D	K	C	R	G	W	R	L	C	I	S	G	C	P	Y	K	K	I	Y	F	N	W	K	S	G	K	S
Secondary structure
SS confidence
Disorder																																																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		E	K	C	I	F	C	Y	P	R	I	E	S	G	Q	P	T	V	C	S	E	T	C	V	G	R	I	R	Y	L	G	V	L	L	Y	D	A	D	R	I	E	E	A	A	S	T	E	R	E	V	D	L	Y	E	R	Q	C	E	V	F	L
Secondary structure
SS confidence
Disorder																																													?	?	?	?	?	?		?					?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	P	H	D	P	S	V	I	E	E	A	L	K	Q	G	I	P	Q	N	V	I	D	A	A	Q	R	S	P	V	Y	K	M	A	M	D	W	K	L	A	L	P	L	H	P	E	Y	R	T	L	P	M	V	W	Y	V	P	P	L	S	P
Secondary structure
SS confidence
Disorder														?	?				?	?			?	?	?	?			?		?					?																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		I	Q	S	Y	A	D	A	G	G	L	P	K	S	E	G	V	L	P	A	I	E	S	L	R	I	P	V	Q	Y	L	A	N	M	L	S	A	G	D	T	G	P	V	L	R	A	L	K	R	M	M	A	M	R	H	Y	M	R	S	Q	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?				?														?	?																			?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		V	E	G	V	T	D	T	R	A	I	D	E	V	G	L	S	V	A	Q	V	E	E	M	Y	R	Y	L	A	I	A	N	Y	E	D	R	F	V	I	P	T	S	H	R	E	M	A	G	D	A	F	A	E	R	N	G	C	G	F	T	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?							?	?	?	?																																				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
Sequence		G	D	G	C	H	G	S	D	S	K	F	N	L	F	N	S	S	R	I	D	A	I	N	I	T	E	V	R	D	K	A	E	G	E
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1y5i chain B domain 1 Region: 1 - 506 Aligned: 505 Modelled: 506 Confidence: 100.0% Identity: 78% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2ivf chain B Region: 4 - 434 Aligned: 327 Modelled: 328 Confidence: 100.0% Identity: 40% PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum Phyre2 PDB 1ti2 chain F Region: 4 - 354 Aligned: 184 Modelled: 188 Confidence: 100.0% Identity: 37% PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici Phyre2 PDB 2vpy chain B Region: 4 - 357 Aligned: 180 Modelled: 182 Confidence: 100.0% Identity: 44% PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) Phyre2 PDB 1kqf chain B domain 1 Region: 2 - 355 Aligned: 203 Modelled: 215 Confidence: 100.0% Identity: 27% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1kqf chain B Region: 4 - 284 Aligned: 175 Modelled: 176 Confidence: 100.0% Identity: 26% PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli Phyre2 PDB 1vlf chain N domain 2 Region: 4 - 354 Aligned: 184 Modelled: 187 Confidence: 100.0% Identity: 35% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1h0h chain B Region: 7 - 291 Aligned: 179 Modelled: 180 Confidence: 100.0% Identity: 25% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1gx7 chain A Region: 176 - 483 Aligned: 255 Modelled: 269 Confidence: 100.0% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase Phyre2 PDB 1hfe chain L Region: 204 - 483 Aligned: 257 Modelled: 280 Confidence: 100.0% Identity: 16% PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans Phyre2 PDB 1c4c chain A Region: 202 - 488 Aligned: 262 Modelled: 278 Confidence: 100.0% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum Phyre2 PDB 3c8y chain A domain 1 Region: 276 - 483 Aligned: 195 Modelled: 208 Confidence: 99.9% Identity: 13% Fold: Fe-only hydrogenase Superfamily: Fe-only hydrogenase Family: Fe-only hydrogenase Phyre2 PDB 3lx4 chain B Region: 294 - 487 Aligned: 182 Modelled: 194 Confidence: 99.9% Identity: 15% PDB header:oxidoreductase Chain: B: PDB Molecule:fe-hydrogenase; PDBTitle: stepwise [fefe]-hydrogenase h-cluster assembly revealed in the2 structure of hyda(deltaefg) Phyre2 PDB 1hfe chain L domain 1 Region: 276 - 483 Aligned: 196 Modelled: 208 Confidence: 99.9% Identity: 11% Fold: Fe-only hydrogenase Superfamily: Fe-only hydrogenase Family: Fe-only hydrogenase Phyre2 PDB 3gyx chain J Region: 176 - 289 Aligned: 113 Modelled: 114 Confidence: 99.4% Identity: 18% PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas Phyre2 PDB 1jnr chain B Region: 176 - 275 Aligned: 100 Modelled: 100 Confidence: 99.4% Identity: 17% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2v2k chain B Region: 177 - 285 Aligned: 101 Modelled: 109 Confidence: 99.3% Identity: 19% PDB header:electron transport Chain: B: PDB Molecule:ferredoxin; PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis Phyre2 PDB 7fd1 chain A Region: 177 - 236 Aligned: 58 Modelled: 60 Confidence: 99.3% Identity: 28% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 PDB 3c7b chain B domain 1 Region: 176 - 236 Aligned: 61 Modelled: 61 Confidence: 99.3% Identity: 25% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1h98 chain A Region: 176 - 254 Aligned: 77 Modelled: 79 Confidence: 99.3% Identity: 22% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 1 d1y5ib1 2 c2ivfB_ 3 c1ti2F_ 4 c2vpyB_ 5 d1kqfb1 6 c1kqfB_ 7 d1vlfn2 8 d1h0hb_ 9 c1gx7A_ 10 c1hfeL_ 11 c1c4cA_ 12 d3c8ya1 13 c3lx4B_ 14 d1hfel1 15 c3gyxJ_ 16 d1jnrb_ 17 c2v2kB_ 18 d7fd1a_ 19 d3c7bb1 20 d1h98a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1y5ib1 100.0 78 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 2 c2ivfB_ 100.0 40 PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 3 c1ti2F_ 100.0 37 PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici 4 c2vpyB_ 100.0 44 PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) 5 d1kqfb1 100.0 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 6 c1kqfB_ 100.0 26 PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli 7 d1vlfn2 100.0 35 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 8 d1h0hb_ 100.0 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 9 c1gx7A_ 100.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase 10 c1hfeL_ 100.0 16 PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans 11 c1c4cA_ 100.0 15 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum 12 d3c8ya1 99.9 13 Fold:Fe-only hydrogenase Superfamily:Fe-only hydrogenase Family:Fe-only hydrogenase 13 c3lx4B_ 99.9 15 PDB header:oxidoreductase Chain: B: PDB Molecule:fe-hydrogenase; PDBTitle: stepwise [fefe]-hydrogenase h-cluster assembly revealed in the2 structure of hyda(deltaefg) 14 d1hfel1 99.9 11 Fold:Fe-only hydrogenase Superfamily:Fe-only hydrogenase Family:Fe-only hydrogenase 15 c3gyxJ_ 99.4 18 PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas 16 d1jnrb_ 99.4 17 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 17 c2v2kB_ 99.3 19 PDB header:electron transport Chain: B: PDB Molecule:ferredoxin; PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis 18 d7fd1a_ 99.3 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 19 d3c7bb1 99.3 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 20 d1h98a_ 99.3 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 21 c1gthD_ not modelled 99.2 20 PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil 22 d1bc6a_ not modelled 99.2 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 23 d1hfel2 not modelled 99.1 18 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 24 d2c42a5 not modelled 99.0 31 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 25 d1clfa_ not modelled 98.9 30 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 26 c2zvsB_ not modelled 98.9 19 PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli 27 c2gmhA_ not modelled 98.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone 28 d1dura_ not modelled 98.9 29 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 29 d1gtea5 not modelled 98.9 18 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 30 d1fcaa_ not modelled 98.9 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 31 c3c7bE_ not modelled 98.8 28 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 32 d2fdna_ not modelled 98.8 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 33 d1xera_ not modelled 98.8 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Archaeal ferredoxins 34 c2c3yA_ not modelled 98.8 24 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus 35 d2gmha3 not modelled 98.8 17 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:ETF-QO domain-like 36 d2fug91 not modelled 98.8 30 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 37 c2fugG_ not modelled 98.8 30 PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 38 d1blua_ not modelled 98.7 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 39 c2fgoA_ not modelled 98.6 28 PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa 40 d1rgva_ not modelled 98.6 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 41 c2v4jE_ not modelled 98.6 24 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 42 d1jb0c_ not modelled 98.6 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 43 d2fug34 not modelled 98.5 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 44 c3bk7A_ not modelled 98.5 28 PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii 45 d1vjwa_ not modelled 98.4 18 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 46 d3c8ya3 not modelled 98.4 19 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 47 c3c7bA_ not modelled 98.3 27 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 48 c2v4jA_ not modelled 98.3 20 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 49 c2fugC_ not modelled 97.8 29 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 50 d1fxra_ not modelled 97.8 19 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 51 d1sj1a_ not modelled 97.8 23 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 52 d1iqza_ not modelled 97.7 19 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 53 c1dwlA_ not modelled 97.7 23 PDB header:electron transfer Chain: A: PDB Molecule:ferredoxin i; PDBTitle: the ferredoxin-cytochrome complex using heteronuclear nmr2 and docking simulation 54 d2v4jb1 not modelled 97.5 31 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 55 c2b76N_ not modelled 96.9 24 PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation 56 c3cf4A_ not modelled 96.8 25 PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 57 c2bs2E_ not modelled 96.8 31 PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes 58 c1nekB_ not modelled 96.0 26 PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound 59 d2bs2b1 not modelled 95.9 18 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 60 d1nekb1 not modelled 95.7 31 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 61 d1kf6b1 not modelled 95.4 26 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 62 c2h89B_ not modelled 94.8 28 PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound 63 d3c7ba1 not modelled 93.8 35 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 64 d2v4ja1 not modelled 93.6 29 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 65 c2vdcI_ not modelled 90.8 23 PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. 66 c2dxbR_ not modelled 70.3 22 PDB header:hydrolase Chain: R: PDB Molecule:thiocyanate hydrolase subunit gamma; PDBTitle: recombinant thiocyanate hydrolase comprising partially-modified cobalt2 centers 67 d1gtea1 not modelled 63.3 28 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Dihydropyrimidine dehydrogenase, N-terminal domain 68 c3qyhG_ not modelled 59.8 16 PDB header:lyase Chain: G: PDB Molecule:co-type nitrile hydratase alpha subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-h71l from2 pseudomonas putida. 69 c2z6vA_ not modelled 57.6 29 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of sulfotransferase stf9 from2 mycobacterium avium 70 d1ugpa_ not modelled 48.7 21 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 71 d2igsa1 not modelled 36.4 20 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:PA2222-like 72 c1m2oA_ not modelled 30.8 24 PDB header:protein transport/signaling protein Chain: A: PDB Molecule:protein transport protein sec23; PDBTitle: crystal structure of the sec23-sar1 complex 73 c1m2vB_ not modelled 29.7 22 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the yeast sec23/24 heterodimer 74 c1g8jC_ not modelled 28.9 22 PDB header:oxidoreductase Chain: C: PDB Molecule:arsenite oxidase; PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis 75 d1v29a_ not modelled 21.8 22 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 76 d1djqa3 not modelled 21.0 33 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like 77 d1seda_ not modelled 16.1 18 Fold:Hypothetical protein YhaI Superfamily:Hypothetical protein YhaI Family:Hypothetical protein YhaI 78 d1pyfa_ not modelled 14.7 14 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 79 c2a91A_ not modelled 14.6 15 PDB header:signaling protein,transferase,membrane p Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: crystal structure of erbb2 domains 1-3 80 c3eg9B_ not modelled 14.5 19 PDB header:protein transport Chain: B: PDB Molecule:sec24 related gene family, member d; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin 81 c2fugA_ not modelled 14.4 29 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 82 c2yqfA_ not modelled 13.1 18 PDB header:protein binding Chain: A: PDB Molecule:ankyrin-1; PDBTitle: solution structure of the death domain of ankyrin-1 83 c2ldiA_ not modelled 12.0 17 PDB header:hydrolase Chain: A: PDB Molecule:zinc-transporting atpase; PDBTitle: nmr solution structure of ziaan sub mutant 84 d1fxda_ not modelled 11.7 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 85 d2qw6a1 not modelled 11.1 23 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:MgsA/YrvN C-terminal domain-like 86 c2qw6A_ not modelled 11.1 23 PDB header:hydrolase Chain: A: PDB Molecule:aaa atpase, central region; PDBTitle: crystal structure of the c-terminal domain of an aaa atpase from2 enterococcus faecium do 87 d2d6fc2 not modelled 10.0 24 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 88 c1s6wA_ not modelled 9.8 50 PDB header:antibiotic Chain: A: PDB Molecule:hepcidin; PDBTitle: solution structure of hybrid white striped bass hepcidin 89 d2hyec1 not modelled 9.7 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:SCF ubiquitin ligase complex WHB domain 90 c2dtgE_ not modelled 9.3 23 PDB header:hormone receptor/immune system Chain: E: PDB Molecule:insulin receptor; PDBTitle: insulin receptor (ir) ectodomain in complex with fab's 91 d2ouwa1 not modelled 9.3 23 Fold:AhpD-like Superfamily:AhpD-like Family:TTHA0727-like 92 c2qkdA_ not modelled 9.2 14 PDB header:signaling protein, cell cycle Chain: A: PDB Molecule:zinc finger protein zpr1; PDBTitle: crystal structure of tandem zpr1 domains 93 c2hjpA_ not modelled 9.1 19 PDB header:hydrolase Chain: A: PDB Molecule:phosphonopyruvate hydrolase; PDBTitle: crystal structure of phosphonopyruvate hydrolase complex with2 phosphonopyruvate and mg++ 94 d3c7bb3 not modelled 8.9 18 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like 95 c3c6fD_ not modelled 8.9 12 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:yetf protein; PDBTitle: crystal structure of protein bsu07140 from bacillus subtilis 96 d1zq1c2 not modelled 8.8 24 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 97 c3k30B_ not modelled 8.7 45 PDB header:oxidoreductase Chain: B: PDB Molecule:histamine dehydrogenase; PDBTitle: histamine dehydrogenase from nocardiodes simplex 98 c3egxB_ not modelled 8.5 34 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24a; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23a/24a complexed with the snare protein sec22b and3 bound to the transport signal sequence of the snare protein4 bet1 99 c2pmzS_ not modelled 8.0 19 PDB header:translation, transferase Chain: S: PDB Molecule:dna-directed rna polymerase subunit d; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0