Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	P	V	L	T	Q	H	V	S	Q	P	I	T	L	D	E	Q	T	Q	K	M	K	R	H	L	L	Q	D	I	R	R	S	A	Y	V	Y	R	V	D	C	G	G	C	N	A	C	E	I	E	I	F	A	A	I	T	P	V	F	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	E	R	F	G	I	K	V	V	S	S	P	R	H	A	D	I	L	L	F	T	G	A	V	T	R	A	M	R	M	P	A	L	R	A	Y	E	S	A	P	D	H	K	I	C	V	S	Y	G	A	C	G	V	G	G	G	I	F	H	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	Y	S	V	W	G	G	S	D	T	I	V	P	I	D	V	W	I	P	G	C	P	P	T	P	A	A	T	I	H	G	F	A	V	A	L	G	L	L	Q	Q	K	I	H	A	V	D	Y	R	D	P	T	G	V	T	M	Q	P	L	W
Secondary structure
SS confidence
Disorder																																												?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		P	Q	I	P	P	S	Q	R	I	A	I	E	R	E	A	R	R	L	A	G	Y	R	Q	G	R	E	I	C	D	R	L	L	R	H	L	S	D	D	P	T	G	N	R	V	N	T	W	L	R	D	A	D	D	P	R	L	N	S	I	V
Secondary structure
SS confidence
Disorder		?	?							?	?		?	?	?	?																					?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.
Sequence		Q	Q	L	F	R	V	L	R	G	L	H	D
Secondary structure
SS confidence
Disorder										?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2fug chain 6 domain 1 Region: 19 - 177 Aligned: 135 Modelled: 143 Confidence: 100.0% Identity: 32% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nq06-like Phyre2 PDB 1frf chain S Region: 31 - 156 Aligned: 126 Modelled: 126 Confidence: 99.9% Identity: 20% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nickel-iron hydrogenase, small subunit Phyre2 PDB 1wui chain S domain 1 Region: 31 - 156 Aligned: 126 Modelled: 126 Confidence: 99.9% Identity: 21% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nickel-iron hydrogenase, small subunit Phyre2 PDB 1e3d chain A Region: 34 - 156 Aligned: 123 Modelled: 123 Confidence: 99.9% Identity: 22% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nickel-iron hydrogenase, small subunit Phyre2 PDB 1h2a chain S Region: 31 - 156 Aligned: 126 Modelled: 126 Confidence: 99.9% Identity: 21% PDB header:oxidoreductase Chain: S: PDB Molecule:hydrogenase; PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris Phyre2 PDB 3rgw chain S Region: 34 - 157 Aligned: 124 Modelled: 124 Confidence: 99.9% Identity: 17% PDB header:oxidoreductase/oxidoreductase Chain: S: PDB Molecule:membrane-bound hydrogenase (nife) small subunit hoxk; PDBTitle: crystal structure at 1.5 a resolution of an h2-reduced, o2-tolerant2 hydrogenase from ralstonia eutropha unmasks a novel iron-sulfur3 cluster Phyre2 PDB 1yq9 chain A domain 1 Region: 31 - 156 Aligned: 126 Modelled: 126 Confidence: 99.9% Identity: 18% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nickel-iron hydrogenase, small subunit Phyre2 PDB 3myr chain E Region: 31 - 157 Aligned: 127 Modelled: 126 Confidence: 99.9% Identity: 21% PDB header:oxidoreductase Chain: E: PDB Molecule:hydrogenase (nife) small subunit hyda; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state Phyre2 PDB 1cc1 chain S Region: 32 - 156 Aligned: 125 Modelled: 124 Confidence: 99.9% Identity: 28% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nickel-iron hydrogenase, small subunit Phyre2 PDB 2wpn chain A Region: 34 - 157 Aligned: 124 Modelled: 124 Confidence: 99.8% Identity: 23% PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [nifese] hydrogenase, small subunit; PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough Phyre2 PDB 2v4j chain A Region: 61 - 142 Aligned: 80 Modelled: 82 Confidence: 63.5% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration Phyre2 PDB 2dld chain A domain 2 Region: 75 - 175 Aligned: 88 Modelled: 101 Confidence: 57.2% Identity: 15% Fold: Flavodoxin-like Superfamily: Formate/glycerate dehydrogenase catalytic domain-like Family: Formate/glycerate dehydrogenases, substrate-binding domain Phyre2 PDB 1e5d chain A domain 1 Region: 73 - 166 Aligned: 92 Modelled: 94 Confidence: 53.5% Identity: 15% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 3rl4 chain A Region: 74 - 111 Aligned: 38 Modelled: 38 Confidence: 49.9% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:metallophosphoesterase mpped2; PDBTitle: rat metallophosphodiesterase mpped2 g252h mutant Phyre2 PDB 2d3y chain A Region: 86 - 112 Aligned: 27 Modelled: 27 Confidence: 41.8% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: crystal structure of uracil-dna glycosylase from thermus thermophilus2 hb8 Phyre2 PDB 3aer chain C Region: 24 - 112 Aligned: 82 Modelled: 89 Confidence: 38.6% Identity: 18% PDB header:oxidoreductase Chain: C: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark Phyre2 PDB 3trh chain I Region: 61 - 143 Aligned: 68 Modelled: 83 Confidence: 36.7% Identity: 24% PDB header:lyase Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii Phyre2 PDB 1sqs chain A Region: 44 - 116 Aligned: 73 Modelled: 73 Confidence: 33.7% Identity: 15% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Hypothetical protein SP1951 Phyre2 PDB 1vme chain A domain 1 Region: 18 - 160 Aligned: 132 Modelled: 143 Confidence: 33.0% Identity: 8% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1zvu chain A Region: 148 - 239 Aligned: 92 Modelled: 92 Confidence: 32.7% Identity: 16% PDB header:isomerase Chain: A: PDB Molecule:topoisomerase iv subunit a; PDBTitle: structure of the full-length e. coli parc subunit Phyre2 1 d2fug61 2 d1frfs_ 3 d1wuis1 4 d1e3da_ 5 c1h2aS_ 6 c3rgwS_ 7 d1yq9a1 8 c3myrE_ 9 d1cc1s_ 10 c2wpnA_ 11 c2v4jA_ 12 d2dlda2 13 d1e5da1 14 c3rl4A_ 15 c2d3yA_ 16 c3aerC_ 17 c3trhI_ 18 d1sqsa_ 19 d1vmea1 20 c1zvuA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2fug61 100.0 32 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nq06-like 2 d1frfs_ 99.9 20 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 3 d1wuis1 99.9 21 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 4 d1e3da_ 99.9 22 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 5 c1h2aS_ 99.9 21 PDB header:oxidoreductase Chain: S: PDB Molecule:hydrogenase; PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris 6 c3rgwS_ 99.9 17 PDB header:oxidoreductase/oxidoreductase Chain: S: PDB Molecule:membrane-bound hydrogenase (nife) small subunit hoxk; PDBTitle: crystal structure at 1.5 a resolution of an h2-reduced, o2-tolerant2 hydrogenase from ralstonia eutropha unmasks a novel iron-sulfur3 cluster 7 d1yq9a1 99.9 18 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 8 c3myrE_ 99.9 21 PDB header:oxidoreductase Chain: E: PDB Molecule:hydrogenase (nife) small subunit hyda; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state 9 d1cc1s_ 99.9 28 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 10 c2wpnA_ 99.8 23 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [nifese] hydrogenase, small subunit; PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough 11 c2v4jA_ 63.5 14 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 12 d2dlda2 57.2 15 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 13 d1e5da1 53.5 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 14 c3rl4A_ 49.9 26 PDB header:hydrolase Chain: A: PDB Molecule:metallophosphoesterase mpped2; PDBTitle: rat metallophosphodiesterase mpped2 g252h mutant 15 c2d3yA_ 41.8 19 PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: crystal structure of uracil-dna glycosylase from thermus thermophilus2 hb8 16 c3aerC_ 38.6 18 PDB header:oxidoreductase Chain: C: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark 17 c3trhI_ 36.7 24 PDB header:lyase Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii 18 d1sqsa_ 33.7 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein SP1951 19 d1vmea1 33.0 8 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 20 c1zvuA_ 32.7 16 PDB header:isomerase Chain: A: PDB Molecule:topoisomerase iv subunit a; PDBTitle: structure of the full-length e. coli parc subunit 21 c2rf4B_ not modelled 31.8 29 PDB header:transferase Chain: B: PDB Molecule:dna-directed rna polymerase i subunit rpa4; PDBTitle: crystal structure of the rna polymerase i subcomplex a14/43 22 c3ca8B_ not modelled 30.0 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ydcf; PDBTitle: crystal structure of escherichia coli ydcf, an s-adenosyl-l-methionine2 utilizing enzyme 23 c1xrsB_ not modelled 30.0 25 PDB header:isomerase Chain: B: PDB Molecule:d-lysine 5,6-aminomutase beta subunit; PDBTitle: crystal structure of lysine 5,6-aminomutase in complex with plp,2 cobalamin, and 5'-deoxyadenosine 24 c2q9uB_ not modelled 29.6 14 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 25 d2hkja2 not modelled 29.3 23 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:DNA gyrase/MutL, second domain 26 c1coyA_ not modelled 27.0 13 PDB header:oxidoreductase(oxygen receptor) Chain: A: PDB Molecule:cholesterol oxidase; PDBTitle: crystal structure of cholesterol oxidase complexed with a2 steroid substrate. implications for fad dependent alcohol3 oxidases 27 d2f2ab2 not modelled 24.1 31 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:GatB/GatE catalytic domain-like 28 d1nwba_ not modelled 22.3 16 Fold:HesB-like domain Superfamily:HesB-like domain Family:HesB-like domain 29 c3ikbB_ not modelled 22.1 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the structure of a conserved protein from streptococcus2 mutans ua159. 30 d2ac7a1 not modelled 21.4 20 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 31 c2z1dA_ not modelled 21.0 20 PDB header:metal binding protein Chain: A: PDB Molecule:hydrogenase expression/formation protein hypd; PDBTitle: crystal structure of [nife] hydrogenase maturation protein, hypd from2 thermococcus kodakaraensis 32 d2dlda1 not modelled 20.6 12 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain 33 c2ax3A_ not modelled 19.9 20 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein tm0922; PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution 34 c2gn0A_ not modelled 19.6 17 PDB header:lyase Chain: A: PDB Molecule:threonine dehydratase catabolic; PDBTitle: crystal structure of dimeric biodegradative threonine deaminase (tdcb)2 from salmonella typhimurium at 1.7 a resolution (triclinic form with3 one complete subunit built in alternate conformation) 35 c3d3kD_ not modelled 19.5 12 PDB header:protein binding Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p 36 d1s98a_ not modelled 19.2 22 Fold:HesB-like domain Superfamily:HesB-like domain Family:HesB-like domain 37 d1miob_ not modelled 18.8 11 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 38 d1m1la_ not modelled 18.3 20 Fold:Suppressor of Fused, N-terminal domain Superfamily:Suppressor of Fused, N-terminal domain Family:Suppressor of Fused, N-terminal domain 39 c2xdqA_ not modelled 18.0 24 PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex 40 c3bsfB_ not modelled 17.7 11 PDB header:hydrolase Chain: B: PDB Molecule:at4g34840; PDBTitle: crystal structure of the mta/sah nucleosidase 41 d2ax3a2 not modelled 17.5 20 Fold:YjeF N-terminal domain-like Superfamily:YjeF N-terminal domain-like Family:YjeF N-terminal domain-like 42 c3na7A_ not modelled 17.5 12 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 43 d2yt9a2 not modelled 17.4 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 44 d1b3qa1 not modelled 17.2 19 Fold:ROP-like Superfamily:Homodimeric domain of signal transducing histidine kinase Family:Homodimeric domain of signal transducing histidine kinase 45 c2is8A_ not modelled 17.1 24 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 46 d1j4aa1 not modelled 17.0 10 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain 47 c3nm5B_ not modelled 16.9 9 PDB header:hydrolase Chain: B: PDB Molecule:mta/sah nucleosidase; PDBTitle: helicobacter pylori mtan complexed with formycin a 48 c2dg2D_ not modelled 16.2 21 PDB header:protein binding Chain: D: PDB Molecule:apolipoprotein a-i binding protein; PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein 49 d1jysa_ not modelled 15.8 23 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 50 c2d1eA_ not modelled 15.6 13 PDB header:oxidoreductase Chain: A: PDB Molecule:phycocyanobilin:ferredoxin oxidoreductase; PDBTitle: crystal structure of pcya-biliverdin complex 51 d1j4aa2 not modelled 15.5 16 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 52 c2wzlA_ not modelled 15.2 30 PDB header:viral protein Chain: A: PDB Molecule:phosphoprotein; PDBTitle: the structure of the n-rna binding domain of the mokola2 virus phosphoprotein 53 d1pwha_ not modelled 15.1 21 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 54 d2h1qa1 not modelled 14.9 18 Fold:PLP-dependent transferase-like Superfamily:Dhaf3308-like Family:Dhaf3308-like 55 c1geaA_ not modelled 14.9 60 PDB header:neuropeptide Chain: A: PDB Molecule:pituitary adenylate cyclase activating PDBTitle: receptor-bound conformation of pacap21 56 c2k4zA_ not modelled 14.8 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dsrr; PDBTitle: solution nmr structure of allochromatium vinosum dsrr:2 northeast structural genomics consortium target op5 57 c3bl6A_ not modelled 14.6 9 PDB header:hydrolase Chain: A: PDB Molecule:5'-methylthioadenosine nucleosidase/s- PDBTitle: crystal structure of staphylococcus aureus 5'-2 methylthioadenosine/s-adenosylhomocysteine nucleosidase in3 complex with formycin a 58 c2q2eB_ not modelled 14.6 31 PDB header:isomerase Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b; PDBTitle: crystal structure of the topoisomerase vi holoenzyme from2 methanosarcina mazei 59 c3eeiA_ not modelled 14.5 11 PDB header:hydrolase Chain: A: PDB Molecule:5-methylthioadenosine nucleosidase/s- PDBTitle: crystal structure of 5'-methylthioadenosine/s-2 adenosylhomocysteine nucleosidase from neisseria3 meningitidis in complex with methylthio-immucillin-a 60 d1w85a_ not modelled 14.4 15 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase PP module 61 c1zosE_ not modelled 14.4 14 PDB header:hydrolase Chain: E: PDB Molecule:5'-methylthioadenosine / s-adenosylhomocysteine PDBTitle: structure of 5'-methylthionadenosine/s-adenosylhomocysteine2 nucleosidase from s. pneumoniae with a transition-state3 inhibitor mt-imma 62 c3npgD_ not modelled 14.3 15 PDB header:unknown function Chain: D: PDB Molecule:uncharacterized duf364 family protein; PDBTitle: crystal structure of a protein with unknown function from duf3642 family (ph1506) from pyrococcus horikoshii at 2.70 a resolution 63 c2g5iB_ not modelled 14.1 26 PDB header:ligase Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase PDBTitle: structure of trna-dependent amidotransferase gatcab2 complexed with adp-alf4 64 c1e5dA_ not modelled 14.1 15 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 65 d1xwdb1 not modelled 13.7 19 Fold:Cystine-knot cytokines Superfamily:Cystine-knot cytokines Family:Gonadodropin/Follitropin 66 c3pdiB_ not modelled 13.3 11 PDB header:protein binding Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn; PDBTitle: precursor bound nifen 67 d1hcnb_ not modelled 13.3 25 Fold:Cystine-knot cytokines Superfamily:Cystine-knot cytokines Family:Gonadodropin/Follitropin 68 c1qfwB_ not modelled 13.1 25 PDB header:immune system Chain: B: PDB Molecule:gonadotrophin beta subunit; PDBTitle: ternary complex of human chorionic gonadotropin with fv anti alpha2 subunit and fv anti beta subunit 69 c2zbkB_ not modelled 12.9 19 PDB header:isomerase Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b; PDBTitle: crystal structure of an intact type ii dna topoisomerase:2 insights into dna transfer mechanisms 70 c1vmeB_ not modelled 12.8 11 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 71 c1ychD_ not modelled 12.4 25 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 72 d1fyja_ not modelled 12.0 57 Fold:S15/NS1 RNA-binding domain Superfamily:S15/NS1 RNA-binding domain Family:a tRNA synthase domain 73 d1fmfa_ not modelled 12.0 18 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 74 c2rmzA_ not modelled 12.0 24 PDB header:cell adhesion Chain: A: PDB Molecule:integrin beta-3; PDBTitle: bicelle-embedded integrin beta3 transmembrane segment 75 d1vyia_ not modelled 11.9 30 Fold:Phosphoprotein M1, C-terminal domain Superfamily:Phosphoprotein M1, C-terminal domain Family:Phosphoprotein M1, C-terminal domain 76 c3k1yE_ not modelled 11.8 9 PDB header:oxidoreductase Chain: E: PDB Molecule:oxidoreductase; PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d 77 c3dp9A_ not modelled 11.7 14 PDB header:hydrolase Chain: A: PDB Molecule:mta/sah nucleosidase; PDBTitle: crystal structure of vibrio cholerae 5'-methylthioadenosine/s-adenosyl2 homocysteine nucleosidase (mtan) complexed with butylthio-dadme-3 immucillin a 78 d1sc6a1 not modelled 11.4 5 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain 79 c3tl6B_ not modelled 11.4 14 PDB header:transferase Chain: B: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of purine nucleoside phosphorylase from entamoeba2 histolytica 80 c3oa1B_ not modelled 11.2 26 PDB header:chaperone Chain: B: PDB Molecule:phosphoprotein; PDBTitle: crystal structure of phosphoprotein/protein p/protein m1 residues 69-2 297 from rabies virus reveals degradation to c-terminal domain only 81 d1th5a1 not modelled 11.0 14 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 82 d1umda_ not modelled 10.9 8 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase PP module 83 d2bfda1 not modelled 10.8 11 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase PP module 84 d3cxeb1 not modelled 10.8 83 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Short-chain cytokines 85 d2b0ja2 not modelled 10.6 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 86 c2d2aA_ not modelled 10.6 21 PDB header:metal transport Chain: A: PDB Molecule:sufa protein; PDBTitle: crystal structure of escherichia coli sufa involved in2 biosynthesis of iron-sulfur clusters 87 c3klbA_ not modelled 10.5 18 PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution 88 c1z34A_ not modelled 10.5 23 PDB header:transferase Chain: A: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of trichomonas vaginalis purine nucleoside2 phosphorylase complexed with 2-fluoro-2'-deoxyadenosine 89 c3pdiG_ not modelled 10.4 18 PDB header:protein binding Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife; PDBTitle: precursor bound nifen 90 d1k9sa_ not modelled 10.2 14 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 91 c3rfqC_ not modelled 10.2 24 PDB header:biosynthetic protein Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2; PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum 92 c2apnA_ not modelled 10.1 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein hi1723; PDBTitle: hi1723 solution structure 93 c2dmlA_ not modelled 10.0 26 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a6; PDBTitle: the solution structure of the first thioredoxin domain of2 mouse protein disulfide-isomerase a6 94 c3c7bA_ not modelled 9.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 95 c3h0mE_ not modelled 9.8 23 PDB header:ligase Chain: E: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase PDBTitle: structure of trna-dependent amidotransferase gatcab from2 aquifex aeolicus 96 d2fug71 not modelled 9.8 71 Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Nqo15-like 97 c2o2kA_ not modelled 9.7 23 PDB header:transferase Chain: A: PDB Molecule:methionine synthase; PDBTitle: crystal structure of the activation domain of human2 methionine synthase isoform/mutant d963e/k1071n 98 c1vddC_ not modelled 9.6 33 PDB header:recombination Chain: C: PDB Molecule:recombination protein recr; PDBTitle: crystal structure of recombinational repair protein recr 99 d1r0ka3 not modelled 9.6 33 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0