PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3npgD_

Fold library id	PDB Header	Molecule	Title
c3npgD_	PDB header: unknown function	Chain: D: PDB Molecule: uncharacterized duf364 family protein;	PDBTitle: crystal structure of a protein with unknown function from duf3642 family (ph1506) from pyrococcus horikoshii at 2.70 a resolution

Links to external resources
Added to library: Thu Oct 7 14:38:23 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X L L S R I K K K A X E L A E D L K L V D F S F G L P Y T W V L V E G I E G R A L G V A X T L P E E V Q R Y T N S I E E P S L L E F I D K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
S S
S S
G G G
S
S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D S L N I I E R T L G V A A I N A V S Q Y Y I D L R E A K W I D V T E L I Q Q D E I K R I A I I G N X P P V V R T L K E K Y E V Y V F E R N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
T T
B
S G G G
T T T
S
T T T S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence X K L W D R D T Y S D T L E Y H I L P E V D G I I A S A S C I V N G T L D X I L D R A K K A K L I V I T G P T G Q L L P E F L K G T K V T H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
S S
B
G G G G G G
S T T T
S S
S S G G G G S
G G G G T T S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . .

Sequence L A S X K V T N I E K A L V K L K L G S F K G F E S E S I K Y V I E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	L	L	S	R	I	K	K	K	A	X	E	L	A	E	D	L	K	L	V	D	F	S	F	G	L	P	Y	T	W	V	L	V	E	G	I	E	G	R	A	L	G	V	A	X	T	L	P	E	E	V	Q	R	Y	T	N	S	I	E	E	P	S	L	L	E	F	I	D	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S	T	T										S	S									S	S											G	G	G		S							S	S									T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	S	L	N	I	I	E	R	T	L	G	V	A	A	I	N	A	V	S	Q	Y	Y	I	D	L	R	E	A	K	W	I	D	V	T	E	L	I	Q	Q	D	E	I	K	R	I	A	I	I	G	N	X	P	P	V	V	R	T	L	K	E	K	Y	E	V	Y	V	F	E	R	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		S	S																						T	T		B				S	G	G	G			T	T	T								S										T	T	T	S								S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	X	K	L	W	D	R	D	T	Y	S	D	T	L	E	Y	H	I	L	P	E	V	D	G	I	I	A	S	A	S	C	I	V	N	G	T	L	D	X	I	L	D	R	A	K	K	A	K	L	I	V	I	T	G	P	T	G	Q	L	L	P	E	F	L	K	G	T	K	V	T	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G			S	S		B		G	G	G					G	G	G		S						T	T					T										S	S		S						S	G	G	G	G	S		G	G	G	G	T	T	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Sequence	L	A	S	X	K	V	T	N	I	E	K	A	L	V	K	L	K	L	G	S	F	K	G	F	E	S	E	S	I	K	Y	V	I	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S											T	T							T	T