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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c2zbkB_

Fold library idPDB HeaderMoleculeTitle
c2zbkB_PDB header: isomeraseChain: B: PDB Molecule: type 2 dna topoisomerase 6 subunit b;PDBTitle: crystal structure of an intact type ii dna topoisomerase:2 insights into dna transfer mechanisms


Added to library: Tue Mar 16 12:22:12 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPP
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Known secondary structure (DSSP)
GGGT

GGGT
SSTTTTTTT




TTTT

S



G
 .........80.........90.........100.........110.........120.........130.........140
Sequence QEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEP
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Known secondary structure (DSSP) GGSTS


S




S

S
SSSS




TT
STTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence IIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIYEYIKRTYIITPYAEFIFKDPEGNVTYYPRLTNKIP
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Known secondary structure (DSSP)

SS




TT


TTS








 .........220.........230.........240.........250.........260.........270.........280
Sequence KPPQEVKPHPYGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEI
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Known secondary structure (DSSP)








GGG

TT
SS

BTTSTT

TT

SS
BSS


 .........290.........300.........310.........320.........330.........340.........350
Sequence TRLVETFKKDEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIP
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Known secondary structure (DSSP)







STT




TTTTTTT

S


TTSTTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence VGEEPIVLRYANKIPLIYDEKSDVIWKVVEELDWKRYGIESDQYQMVVMVHLCSTKIPYKSAGKESIAEV
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Known secondary structure (DSSP)
BSS
TT
TTGGG
S
TTSSS


SSB
SS

BSSSS
S
B


 .........430.........440.........450.........460.........470.........480.........490
Sequence ENIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLLAYLKYIPEVSRSLATFLASGNKELVSKYQNEISE
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Known secondary structure (DSSP) TTTTTT

STTT
 .........500......
Sequence GLFKLISKKLDLINIE
Predicted secondary structure



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Known secondary structure (DSSP) TTT








Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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