PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2d3yA_

Fold library id	PDB Header	Molecule	Title
c2d3yA_	PDB header: hydrolase	Chain: A: PDB Molecule: uracil-dna glycosylase;	PDBTitle: crystal structure of uracil-dna glycosylase from thermus2 thermophilus hb8

Links to external resources
Added to library: Tue Mar 16 12:29:03 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M D R E A F V Q T L T A C R L C P R L V A W R E E V V G R K R A F R G E P Y W A R P V P G F G D P E A R I L L F G L A P G A H G S N R T G R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T T S G G G T T S
S
T T
S S
T T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P F T G D A S G A F L Y P L L H E A G L S S K P E S L P G D D L R L Y G V Y L T A A V R C A P P K N K P T P E E L R A C A R W T E V E L G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T S T T
B S
S
T T S
B S S S
S
G G G
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L P E V R V Y V A L G R I A L E A L L A H F G L R K S A H P F R H G A H Y P L P G G R H L L A S Y H V S R Q N T Q T G R L T R E M F L E V L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S T
T T T S
T T
T T T
S T S S

. . . . . . . . .

Sequence M E A K R L A G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	D	R	E	A	F	V	Q	T	L	T	A	C	R	L	C	P	R	L	V	A	W	R	E	E	V	V	G	R	K	R	A	F	R	G	E	P	Y	W	A	R	P	V	P	G	F	G	D	P	E	A	R	I	L	L	F	G	L	A	P	G	A	H	G	S	N	R	T	G	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T														T	T	T	T	S	G	G	G	T	T	S					S								T	T		S						S				T	T	T					S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	F	T	G	D	A	S	G	A	F	L	Y	P	L	L	H	E	A	G	L	S	S	K	P	E	S	L	P	G	D	D	L	R	L	Y	G	V	Y	L	T	A	A	V	R	C	A	P	P	K	N	K	P	T	P	E	E	L	R	A	C	A	R	W	T	E	V	E	L	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	T	S													T	T		B	S		S				T	T	S				B	S	S						S			S			G	G	G																				T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	P	E	V	R	V	Y	V	A	L	G	R	I	A	L	E	A	L	L	A	H	F	G	L	R	K	S	A	H	P	F	R	H	G	A	H	Y	P	L	P	G	G	R	H	L	L	A	S	Y	H	V	S	R	Q	N	T	Q	T	G	R	L	T	R	E	M	F	L	E	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T								S												T			T	T	T	S				T	T						T	T	T										S							T	S	S
	.	.	.	.	.	.	.	.	.
Sequence	M	E	A	K	R	L	A	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T