Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP06992
DateThu Jan 5 10:59:48 GMT 2012
Unique Job IDd7d37e1848855387

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3uzuA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase a;
PDBTitle: the structure of the ribosomal rna small subunit methyltransferase a2 from burkholderia pseudomallei
Confidence and coverage
Confidence:100.0% Coverage: 93%
253 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD
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Disorder  ??????????????













































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   .........70.........80.........90.........100.........110.........120
Sequence  QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNIST
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   .........130.........140.........150.........160.........170.........180
Sequence  PLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSA
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   .........190.........200.........210.........220.........230.........240
Sequence  FTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTG
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   .........250.........260.........270...
Sequence  MGIDPAMRAENISVAQYCQMANYLAENAPLQES
Secondary structure 
















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Disorder 



?




















???????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3uzu chain A

3D model

Region: 13 - 267
Aligned: 253
Modelled: 255
Confidence: 100.0%
Identity: 52%
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase a;
PDBTitle: the structure of the ribosomal rna small subunit methyltransferase a2 from burkholderia pseudomallei

Phyre2

PDB 1qyr chain A

3D model

Region: 17 - 268
Aligned: 252
Modelled: 252
Confidence: 100.0%
Identity: 100%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: rRNA adenine dimethylase-like

Phyre2

PDB 3tqs chain B

3D model

Region: 17 - 264
Aligned: 246
Modelled: 248
Confidence: 100.0%
Identity: 48%
PDB header:transferase
Chain: B: PDB Molecule:ribosomal rna small subunit methyltransferase a;
PDBTitle: structure of the dimethyladenosine transferase (ksga) from coxiella2 burnetii

Phyre2

PDB 3fux chain B

3D model

Region: 6 - 265
Aligned: 248
Modelled: 253
Confidence: 100.0%
Identity: 36%
PDB header:transferase
Chain: B: PDB Molecule:dimethyladenosine transferase;
PDBTitle: t. thermophilus 16s rrna a1518 and a1519 methyltransferase (ksga) in2 complex with 5'-methylthioadenosine in space group p212121

Phyre2

PDB 1zq9 chain A domain 1

3D model

Region: 17 - 268
Aligned: 242
Modelled: 252
Confidence: 100.0%
Identity: 28%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: rRNA adenine dimethylase-like

Phyre2

PDB 3grr chain A

3D model

Region: 17 - 266
Aligned: 242
Modelled: 250
Confidence: 100.0%
Identity: 30%
PDB header:transferase
Chain: A: PDB Molecule:dimethyladenosine transferase;
PDBTitle: crystal structure of the complex between s-adenosyl homocysteine and2 methanocaldococcus jannaschi dim1.

Phyre2

PDB 3fyd chain A

3D model

Region: 17 - 271
Aligned: 247
Modelled: 255
Confidence: 100.0%
Identity: 30%
PDB header:transferase
Chain: A: PDB Molecule:probable dimethyladenosine transferase;
PDBTitle: crystal structure of dim1 from the thermophilic archeon,2 methanocaldococcus jannaschi

Phyre2

PDB 1i4w chain A

3D model

Region: 9 - 271
Aligned: 257
Modelled: 263
Confidence: 100.0%
Identity: 14%
PDB header:transcription
Chain: A: PDB Molecule:mitochondrial replication protein mtf1;
PDBTitle: the crystal structure of the transcription factor sc-mttfb2 offers intriguing insights into mitochondrial transcription

Phyre2

PDB 1i4w chain A

3D model

Region: 9 - 271
Aligned: 257
Modelled: 263
Confidence: 100.0%
Identity: 14%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: rRNA adenine dimethylase-like

Phyre2

PDB 2h1r chain A

3D model

Region: 18 - 268
Aligned: 239
Modelled: 251
Confidence: 100.0%
Identity: 24%
PDB header:transferase
Chain: A: PDB Molecule:dimethyladenosine transferase, putative;
PDBTitle: crystal structure of a dimethyladenosine transferase from2 plasmodium falciparum

Phyre2

PDB 3fte chain A

3D model

Region: 21 - 267
Aligned: 232
Modelled: 247
Confidence: 100.0%
Identity: 35%
PDB header:transferase/rna
Chain: A: PDB Molecule:dimethyladenosine transferase;
PDBTitle: crystal structure of a. aeolicus ksga in complex with rna

Phyre2

PDB 1yub chain A

3D model

Region: 1 - 267
Aligned: 241
Modelled: 264
Confidence: 100.0%
Identity: 23%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: rRNA adenine dimethylase-like

Phyre2

PDB 1qam chain A

3D model

Region: 17 - 265
Aligned: 229
Modelled: 249
Confidence: 100.0%
Identity: 27%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: rRNA adenine dimethylase-like

Phyre2

PDB 1wy7 chain A domain 1

3D model

Region: 11 - 120
Aligned: 101
Modelled: 110
Confidence: 99.6%
Identity: 15%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Ta1320-like

Phyre2

PDB 2okc chain A domain 1

3D model

Region: 12 - 199
Aligned: 174
Modelled: 179
Confidence: 99.6%
Identity: 17%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: N-6 DNA Methylase-like

Phyre2

PDB 2ar0 chain A domain 1

3D model

Region: 12 - 199
Aligned: 176
Modelled: 188
Confidence: 99.6%
Identity: 16%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: N-6 DNA Methylase-like

Phyre2

PDB 1uwv chain A domain 2

3D model

Region: 13 - 196
Aligned: 168
Modelled: 177
Confidence: 99.6%
Identity: 11%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: (Uracil-5-)-methyltransferase

Phyre2

PDB 3lkd chain B

3D model

Region: 12 - 199
Aligned: 178
Modelled: 188
Confidence: 99.5%
Identity: 20%
PDB header:transferase
Chain: B: PDB Molecule:type i restriction-modification system
PDBTitle: crystal structure of the type i restriction-modification2 system methyltransferase subunit from streptococcus3 thermophilus, northeast structural genomics consortium4 target sur80

Phyre2

PDB 1vbf chain A

3D model

Region: 16 - 113
Aligned: 92
Modelled: 98
Confidence: 99.5%
Identity: 18%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Protein-L-isoaspartyl O-methyltransferase

Phyre2

PDB 3khk chain A

3D model

Region: 12 - 206
Aligned: 183
Modelled: 186
Confidence: 99.5%
Identity: 14%
PDB header:dna binding protein
Chain: A: PDB Molecule:type i restriction-modification system
PDBTitle: crystal structure of type-i restriction-modification system2 methylation subunit (mm_0429) from methanosarchina mazei.

Phyre2
1

c3uzuA_
2

d1qyra_
3

c3tqsB_
4

c3fuxB_
5

d1zq9a1
6

c3grrA_
7

c3fydA_
8

c1i4wA_
9

d1i4wa_
10

c2h1rA_
11

c3fteA_
12

d1yuba_
13

d1qama_
14

d1wy7a1
15

d2okca1
16

d2ar0a1
17

d1uwva2
18

c3lkdB_
19

d1vbfa_
20

c3khkA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3uzuA_



100.0 52 PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase a;
PDBTitle: the structure of the ribosomal rna small subunit methyltransferase a2 from burkholderia pseudomallei
2d1qyra_



100.0 100 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA adenine dimethylase-like
3c3tqsB_



100.0 48 PDB header:transferase
Chain: B: PDB Molecule:ribosomal rna small subunit methyltransferase a;
PDBTitle: structure of the dimethyladenosine transferase (ksga) from coxiella2 burnetii
4c3fuxB_



100.0 36 PDB header:transferase
Chain: B: PDB Molecule:dimethyladenosine transferase;
PDBTitle: t. thermophilus 16s rrna a1518 and a1519 methyltransferase (ksga) in2 complex with 5'-methylthioadenosine in space group p212121
5d1zq9a1



100.0 28 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA adenine dimethylase-like
6c3grrA_



100.0 30 PDB header:transferase
Chain: A: PDB Molecule:dimethyladenosine transferase;
PDBTitle: crystal structure of the complex between s-adenosyl homocysteine and2 methanocaldococcus jannaschi dim1.
7c3fydA_



100.0 30 PDB header:transferase
Chain: A: PDB Molecule:probable dimethyladenosine transferase;
PDBTitle: crystal structure of dim1 from the thermophilic archeon,2 methanocaldococcus jannaschi
8c1i4wA_



100.0 14 PDB header:transcription
Chain: A: PDB Molecule:mitochondrial replication protein mtf1;
PDBTitle: the crystal structure of the transcription factor sc-mttfb2 offers intriguing insights into mitochondrial transcription
9d1i4wa_



100.0 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA adenine dimethylase-like
10c2h1rA_



100.0 24 PDB header:transferase
Chain: A: PDB Molecule:dimethyladenosine transferase, putative;
PDBTitle: crystal structure of a dimethyladenosine transferase from2 plasmodium falciparum
11c3fteA_



100.0 35 PDB header:transferase/rna
Chain: A: PDB Molecule:dimethyladenosine transferase;
PDBTitle: crystal structure of a. aeolicus ksga in complex with rna
12d1yuba_



100.0 23 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA adenine dimethylase-like
13d1qama_



100.0 27 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA adenine dimethylase-like
14d1wy7a1



99.6 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Ta1320-like
15d2okca1



99.6 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:N-6 DNA Methylase-like
16d2ar0a1



99.6 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:N-6 DNA Methylase-like
17d1uwva2



99.6 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:(Uracil-5-)-methyltransferase
18c3lkdB_



99.5 20 PDB header:transferase
Chain: B: PDB Molecule:type i restriction-modification system
PDBTitle: crystal structure of the type i restriction-modification2 system methyltransferase subunit from streptococcus3 thermophilus, northeast structural genomics consortium4 target sur80
19d1vbfa_



99.5 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase
20c3khkA_



99.5 14 PDB header:dna binding protein
Chain: A: PDB Molecule:type i restriction-modification system
PDBTitle: crystal structure of type-i restriction-modification system2 methylation subunit (mm_0429) from methanosarchina mazei.
21d1m6ya2



not modelled 99.5 9 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:MraW-like putative methyltransferases
22c1uwvA_



not modelled 99.5 11 PDB header:transferase
Chain: A: PDB Molecule:23s rrna (uracil-5-)-methyltransferase ruma;
PDBTitle: crystal structure of ruma, the iron-sulfur cluster2 containing e. coli 23s ribosomal rna 5-methyluridine3 methyltransferase
23c2ozvA_



not modelled 99.4 13 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein atu0636;
PDBTitle: crystal structure of a predicted o-methyltransferase, protein atu6362 from agrobacterium tumefaciens.
24c3gdhC_



not modelled 99.4 15 PDB header:transferase
Chain: C: PDB Molecule:trimethylguanosine synthase homolog;
PDBTitle: methyltransferase domain of human trimethylguanosine2 synthase 1 (tgs1) bound to m7gtp and adenosyl-homocysteine3 (active form)
25d2f8la1



not modelled 99.4 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:N-6 DNA Methylase-like
26c2yxdA_



not modelled 99.4 11 PDB header:transferase
Chain: A: PDB Molecule:probable cobalt-precorrin-6y c(15)-methyltransferase
PDBTitle: crystal structure of cobalamin biosynthesis precorrin 8w decarboxylase2 (cbit)
27c3egiA_



not modelled 99.4 15 PDB header:transferase
Chain: A: PDB Molecule:trimethylguanosine synthase homolog;
PDBTitle: methyltransferase domain of human trimethylguanosine2 synthase tgs1 bound to m7gpppa (inactive form)
28d1nv8a_



not modelled 99.4 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:N5-glutamine methyltransferase, HemK
29d1ne2a_



not modelled 99.4 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Ta1320-like
30c1aqjB_



not modelled 99.4 16 PDB header:methyltransferase
Chain: B: PDB Molecule:adenine-n6-dna-methyltransferase taqi;
PDBTitle: structure of adenine-n6-dna-methyltransferase taqi
31d2fpoa1



not modelled 99.4 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:YhhF-like
32d1dusa_



not modelled 99.4 10 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Hypothetical protein MJ0882
33c3lbfC_



not modelled 99.3 11 PDB header:transferase
Chain: C: PDB Molecule:protein-l-isoaspartate o-methyltransferase;
PDBTitle: crystal structure of protein l-isoaspartyl methyltransferase from2 escherichia coli
34c1g38A_



not modelled 99.3 18 PDB header:transferase/dna
Chain: A: PDB Molecule:modification methylase taqi;
PDBTitle: adenine-specific methyltransferase m. taq i/dna complex
35c3ku1E_



not modelled 99.3 10 PDB header:transferase
Chain: E: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of streptococcus pneumoniae sp1610, a2 putative trna (m1a22) methyltransferase, in complex with s-3 adenosyl-l-methionine
36d1wg8a2



not modelled 99.3 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:MraW-like putative methyltransferases
37c3lecA_



not modelled 99.3 10 PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:nadb-rossmann superfamily protein;
PDBTitle: the crystal structure of a protein in the nadb-rossmann2 superfamily from streptococcus agalactiae to 1.8a
38c3gnlB_



not modelled 99.3 9 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein, duf633, lmof2365_1472;
PDBTitle: structure of uncharacterized protein (lmof2365_1472) from2 listeria monocytogenes serotype 4b
39d1l3ia_



not modelled 99.3 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Precorrin-6Y methyltransferase (CbiT)
40c1m6yA_



not modelled 99.3 8 PDB header:transferase
Chain: A: PDB Molecule:s-adenosyl-methyltransferase mraw;
PDBTitle: crystal structure analysis of tm0872, a putative sam-2 dependent methyltransferase, complexed with sah
41c3e05B_



not modelled 99.3 14 PDB header:transferase
Chain: B: PDB Molecule:precorrin-6y c5,15-methyltransferase (decarboxylating);
PDBTitle: crystal structure of precorrin-6y c5,15-methyltransferase from2 geobacter metallireducens gs-15
42c2yxeB_



not modelled 99.3 16 PDB header:transferase
Chain: B: PDB Molecule:protein-l-isoaspartate o-methyltransferase;
PDBTitle: crystal structure of l-isoaspartyl protein carboxyl methyltranferase
43c3bt7A_



not modelled 99.3 16 PDB header:transferase/rna
Chain: A: PDB Molecule:trna (uracil-5-)-methyltransferase;
PDBTitle: structure of e. coli 5-methyluridine methyltransferase trma2 in complex with 19 nucleotide t-arm analogue
44d2fhpa1



not modelled 99.3 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:YhhF-like
45c2pbfA_



not modelled 99.3 16 PDB header:transferase
Chain: A: PDB Molecule:protein-l-isoaspartate o-methyltransferase beta-aspartate
PDBTitle: crystal structure of a putative protein-l-isoaspartate o-2 methyltransferase beta-aspartate methyltransferase (pcmt) from3 plasmodium falciparum in complex with s-adenosyl-l-homocysteine
46c3njrB_



not modelled 99.3 17 PDB header:transferase
Chain: B: PDB Molecule:precorrin-6y methylase;
PDBTitle: crystal structure of c-terminal domain of precorrin-6y c5,15-2 methyltransferase from rhodobacter capsulatus
47c3evzA_



not modelled 99.3 18 PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: crystal strucure of methyltransferase from pyrococcus furiosus
48d1o54a_



not modelled 99.2 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
49c1dl5A_



not modelled 99.2 12 PDB header:transferase
Chain: A: PDB Molecule:protein-l-isoaspartate o-methyltransferase;
PDBTitle: protein-l-isoaspartate o-methyltransferase
50c2yvlB_



not modelled 99.2 19 PDB header:transferase
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of trna (m1a58) methyltransferase trmi from aquifex2 aeolicus
51c3mtiA_



not modelled 99.2 6 PDB header:transferase
Chain: A: PDB Molecule:rrna methylase;
PDBTitle: the crystal structure of a rrna methylase from streptococcus2 thermophilus to 1.95a
52c3mb5A_



not modelled 99.2 23 PDB header:transferase
Chain: A: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of p. abyssi trna m1a58 methyltransferase in complex2 with s-adenosyl-l-methionine
53c3lpmA_



not modelled 99.2 12 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of putative methyltransferase small domain protein2 from listeria monocytogenes
54d1jg1a_



not modelled 99.2 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase
55c3ujcA_



not modelled 99.2 19 PDB header:transferase
Chain: A: PDB Molecule:phosphoethanolamine n-methyltransferase;
PDBTitle: phosphoethanolamine methyltransferase mutant (h132a) from plasmodium2 falciparum in complex with phosphocholine
56c3g5tA_



not modelled 99.2 12 PDB header:transferase
Chain: A: PDB Molecule:trans-aconitate 3-methyltransferase;
PDBTitle: crystal structure of trans-aconitate 3-methyltransferase2 from yeast
57d1dl5a1



not modelled 99.2 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase
58c1wg8B_



not modelled 99.2 16 PDB header:transferase
Chain: B: PDB Molecule:predicted s-adenosylmethionine-dependent
PDBTitle: crystal structure of a predicted s-adenosylmethionine-2 dependent methyltransferase tt1512 from thermus3 thermophilus hb8.
59d1i1na_



not modelled 99.2 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase
60c1wxwA_



not modelled 99.2 9 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ttha1280;
PDBTitle: crystal structure of tt1595, a putative sam-dependent2 methyltransferase from thermus thermophillus hb8
61d2esra1



not modelled 99.2 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:YhhF-like
62c2pjdA_



not modelled 99.2 15 PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase c;
PDBTitle: crystal structure of 16s rrna methyltransferase rsmc
63c3p9nA_



not modelled 99.2 19 PDB header:transferase
Chain: A: PDB Molecule:possible methyltransferase (methylase);
PDBTitle: rv2966c of m. tuberculosis is a rsmd-like methyltransferase
64c2fk8A_



not modelled 99.2 16 PDB header:transferase
Chain: A: PDB Molecule:methoxy mycolic acid synthase 4;
PDBTitle: crystal structure of hma (mmaa4) from mycobacterium tuberculosis2 complexed with s-adenosylmethionine
65d1r18a_



not modelled 99.2 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase
66c3eeyJ_



not modelled 99.1 11 PDB header:transferase
Chain: J: PDB Molecule:putative rrna methylase;
PDBTitle: crystal structure of putative rrna-methylase from clostridium2 thermocellum
67d1yb2a1



not modelled 99.1 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
68c1yb2A_



not modelled 99.1 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ta0852;
PDBTitle: structure of a putative methyltransferase from thermoplasma2 acidophilum.
69c2esrB_



not modelled 99.1 17 PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: conserved hypothetical protein- streptococcus pyogenes
70c3bgdB_



not modelled 99.1 11 PDB header:transferase
Chain: B: PDB Molecule:thiopurine s-methyltransferase;
PDBTitle: thiopurine s-methyltransferase
71d1vl5a_



not modelled 99.1 5 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:UbiE/COQ5-like
72d1i9ga_



not modelled 99.1 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
73c1vl5B_



not modelled 99.1 5 PDB header:transferase
Chain: B: PDB Molecule:unknown conserved protein bh2331;
PDBTitle: crystal structure of a putative methyltransferase (bh2331) from2 bacillus halodurans c-125 at 1.95 a resolution
74d2h00a1



not modelled 99.1 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Methyltransferase 10 domain
75d2b3ta1



not modelled 99.1 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:N5-glutamine methyltransferase, HemK
76c2pwyB_



not modelled 99.1 16 PDB header:transferase
Chain: B: PDB Molecule:trna (adenine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of a m1a58 trna methyltransferase
77c3a27A_



not modelled 99.1 13 PDB header:transferase
Chain: A: PDB Molecule:uncharacterized protein mj1557;
PDBTitle: crystal structure of m. jannaschii tyw2 in complex with2 adomet
78c3dmgA_



not modelled 99.1 19 PDB header:transferase
Chain: A: PDB Molecule:probable ribosomal rna small subunit methyltransferase;
PDBTitle: t. thermophilus 16s rrna n2 g1207 methyltransferase (rsmc) in complex2 with adohcy
79c3lduA_



not modelled 99.1 11 PDB header:transferase
Chain: A: PDB Molecule:putative methylase;
PDBTitle: the crystal structure of a possible methylase from2 clostridium difficile 630.
80c3c0kB_



not modelled 99.1 6 PDB header:transferase
Chain: B: PDB Molecule:upf0064 protein yccw;
PDBTitle: crystal structure of a ribosomal rna methyltranferase
81c3ofkA_



not modelled 99.1 15 PDB header:transferase
Chain: A: PDB Molecule:nodulation protein s;
PDBTitle: crystal structure of n-methyltransferase nods from bradyrhizobium2 japonicum wm9 in complex with s-adenosyl-l-homocysteine (sah)
82c3a26A_



not modelled 99.1 14 PDB header:transferase
Chain: A: PDB Molecule:uncharacterized protein ph0793;
PDBTitle: crystal structure of p. horikoshii tyw2 in complex with2 mesado
83c2yx1A_



not modelled 99.1 12 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein mj0883;
PDBTitle: crystal structure of m.jannaschii trna m1g37 methyltransferase
84d2as0a2



not modelled 99.1 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:hypothetical RNA methyltransferase
85d1xxla_



not modelled 99.1 5 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:UbiE/COQ5-like
86d2nxca1



not modelled 99.1 9 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Ribosomal protein L11 methyltransferase PrmA
87d2ifta1



not modelled 99.1 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:YhhF-like
88c2ipxA_



not modelled 99.1 10 PDB header:transferase
Chain: A: PDB Molecule:rrna 2'-o-methyltransferase fibrillarin;
PDBTitle: human fibrillarin
89d1wxxa2



not modelled 99.1 10 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:hypothetical RNA methyltransferase
90d2fk8a1



not modelled 99.1 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
91c2vs1A_



not modelled 99.1 9 PDB header:transferase
Chain: A: PDB Molecule:uncharacterized rna methyltransferase pyrab10780;
PDBTitle: the crystal structure of pyrococcus abyssi trna (uracil-54,2 c5)-methyltransferase in complex with s-adenosyl-l-3 homocysteine
92c3k0bA_



not modelled 99.0 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:predicted n6-adenine-specific dna methylase;
PDBTitle: crystal structure of a predicted n6-adenine-specific dna methylase2 from listeria monocytogenes str. 4b f2365
93d1l1ea_



not modelled 99.0 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
94c3grzA_



not modelled 99.0 12 PDB header:transferase
Chain: A: PDB Molecule:ribosomal protein l11 methyltransferase;
PDBTitle: crystal structure of ribosomal protein l11 methylase from2 lactobacillus delbrueckii subsp. bulgaricus
95d2b25a1



not modelled 99.0 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
96d2frna1



not modelled 99.0 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Met-10+ protein-like
97c2b78A_



not modelled 99.0 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein smu.776;
PDBTitle: a putative sam-dependent methyltransferase from2 streptococcus mutans
98d1g8sa_



not modelled 99.0 9 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Fibrillarin homologue
99d1pjza_



not modelled 99.0 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Thiopurine S-methyltransferase
100c3egeA_



not modelled 99.0 16 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase from antibiotic biosynthesis
PDBTitle: crystal structure of putative methyltransferase from antibiotic2 biosynthesis pathway (yp_324569.1) from anabaena variabilis atcc3 29413 at 2.40 a resolution
101c2yr0A_



not modelled 99.0 16 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ttha0223;
PDBTitle: crystal structure of hypothetical methyltransferase ttha0223 from2 thermus thermophilus hb8
102c3bgvC_



not modelled 99.0 7 PDB header:transferase
Chain: C: PDB Molecule:mrna cap guanine-n7 methyltransferase;
PDBTitle: crystal structure of mrna cap guanine-n7 methyltransferase2 in complex with sah
103c3e7pA_



not modelled 99.0 15 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of of putative methyltransferase from bacteroides2 vulgatus atcc 8482
104c3ldgA_



not modelled 99.0 11 PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein smu.472;
PDBTitle: crystal structure of smu.472, a putative methyltransferase complexed2 with sah
105d1tpya_



not modelled 99.0 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
106c3b3jA_



not modelled 99.0 10 PDB header:transferase
Chain: A: PDB Molecule:histone-arginine methyltransferase carm1;
PDBTitle: the 2.55 a crystal structure of the apo catalytic domain of2 coactivator-associated arginine methyl transferase i(carm1:28-507,3 residues 28-146 and 479-507 not ordered)
107d1xvaa_



not modelled 99.0 9 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glycine N-methyltransferase
108d1kpia_



not modelled 99.0 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
109d1prya_



not modelled 99.0 9 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Fibrillarin homologue
110c3ccfB_



not modelled 99.0 16 PDB header:transferase
Chain: B: PDB Molecule:cyclopropane-fatty-acyl-phospholipid synthase;
PDBTitle: crystal structure of putative methyltransferase (yp_321342.1) from2 anabaena variabilis atcc 29413 at 1.90 a resolution
111d1ws6a1



not modelled 99.0 8 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:YhhF-like
112c2v7eB_



not modelled 99.0 10 PDB header:transferase
Chain: B: PDB Molecule:histone-arginine methyltransferase carm1;
PDBTitle: crystal structure of coactivator-associated arginine2 methyltransferase 1 (carm1), unliganded
113d2bzga1



not modelled 99.0 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Thiopurine S-methyltransferase
114c3q87B_



not modelled 99.0 11 PDB header:transferase activator/transferase
Chain: B: PDB Molecule:n6 adenine specific dna methylase;
PDBTitle: structure of eukaryotic translation termination complex2 methyltransferase mtq2-trm112
115c3m33B_



not modelled 99.0 9 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of a functionally unknown protein from2 deinococcus radiodurans r1
116c3m70A_



not modelled 99.0 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tellurite resistance protein tehb homolog;
PDBTitle: crystal structure of tehb from haemophilus influenzae
117c2as0A_



not modelled 99.0 14 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ph1915;
PDBTitle: crystal structure of ph1915 (apc 5817): a hypothetical rna2 methyltransferase
118d2igta1



not modelled 99.0 8 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:hypothetical RNA methyltransferase
119d1kpga_



not modelled 98.9 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
120d1wzna1



not modelled 98.9 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:CAC2371-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0