PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3bt7A_

Fold library id	PDB Header	Molecule	Title
c3bt7A_	PDB header: transferase/rna	Chain: A: PDB Molecule: trna (uracil-5-)-methyltransferase;	PDBTitle: structure of e. coli 5-methyluridine methyltransferase trma2 in complex with 19 nucleotide t-arm analogue

Links to external resources
Added to library: Tue Mar 16 13:56:24 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G S H M T P E H L P T E Q Y E A Q L A E K V V R L Q S M M A P F S D L V P E V F R S P V S H Y R M R A E F R I W H D G D D L Y H I I F D Q Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
G G G T T T
S S S
B S T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T K S R I R V D S F P A A S E L I N Q L M T A M I A G V R N N P V L R H K L F Q I D Y L T T L S N Q A V V S L L Y H K K L D D E W R Q E A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
T T B
T T
T T
T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A L R D A L R A Q N L N V H L I G R A T K T K I E L D Q D Y I D E R L P V A G K E M I Y R Q V E N S F T Q P N A A M N I Q M L E W A L D V T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T T S S
S
B T T B
T T S
S B T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence K G S K G D L L E L Y C G N G N F S L A L A R N F D R V L A T E I A K P S V A A A Q Y N I A A N H I D N V Q I I R M A A E E F T Q A M N G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
T T S G G G S S
T T
S
S S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence R E F N R L Q G I D L K S Y Q C E T I F V D P P R S G L D S E T E K M V Q A Y P R I L Y I S C N P E T L C K N L E T L S Q T H K V E R L A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T G G G S
G G G
T T
T T S S S

. . . . . . . . . 360 . . . . . . . . .

Sequence F D Q F P Y T H H M Q C G V L L T A K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	S	H	M	T	P	E	H	L	P	T	E	Q	Y	E	A	Q	L	A	E	K	V	V	R	L	Q	S	M	M	A	P	F	S	D	L	V	P	E	V	F	R	S	P	V	S	H	Y	R	M	R	A	E	F	R	I	W	H	D	G	D	D	L	Y	H	I	I	F	D	Q	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S			G	G	G																	T	T	T												S	S	S		B	S										T	T									T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	K	S	R	I	R	V	D	S	F	P	A	A	S	E	L	I	N	Q	L	M	T	A	M	I	A	G	V	R	N	N	P	V	L	R	H	K	L	F	Q	I	D	Y	L	T	T	L	S	N	Q	A	V	V	S	L	L	Y	H	K	K	L	D	D	E	W	R	Q	E	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T							S			T	T	B																T	T						T	T										T	T										S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	L	R	D	A	L	R	A	Q	N	L	N	V	H	L	I	G	R	A	T	K	T	K	I	E	L	D	Q	D	Y	I	D	E	R	L	P	V	A	G	K	E	M	I	Y	R	Q	V	E	N	S	F	T	Q	P	N	A	A	M	N	I	Q	M	L	E	W	A	L	D	V	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T										T	T					S	S		S								B	T	T	B								T	T	S				S	B															T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	K	G	S	K	G	D	L	L	E	L	Y	C	G	N	G	N	F	S	L	A	L	A	R	N	F	D	R	V	L	A	T	E	I	A	K	P	S	V	A	A	A	Q	Y	N	I	A	A	N	H	I	D	N	V	Q	I	I	R	M	A	A	E	E	F	T	Q	A	M	N	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T			S						S		T	T	S							G	G	G	S	S																						T	T			S								S								S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	R	E	F	N	R	L	Q	G	I	D	L	K	S	Y	Q	C	E	T	I	F	V	D	P	P	R	S	G	L	D	S	E	T	E	K	M	V	Q	A	Y	P	R	I	L	Y	I	S	C	N	P	E	T	L	C	K	N	L	E	T	L	S	Q	T	H	K	V	E	R	L	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	G	G	G	S		G	G	G												T	T											T	T	S	S							S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Sequence	F	D	Q	F	P	Y	T	H	H	M	Q	C	G	V	L	L	T	A	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	T	T	S	S