Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	Y	K	D	E	N	G	V	N	E	P	S	R	R	R	L	L	K	V	I	G	A	L	A	L	A	G	S	C	P	V	A	H	A	Q	K	T	Q	S	A	P	G	T	L	S	P	D	A	R	N	E	K	Q	P	F	Y	G	E	H
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?																						?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	A	G	I	L	T	P	Q	Q	A	A	M	M	L	V	A	F	D	V	L	A	S	D	K	A	D	L	E	R	L	F	R	L	L	T	Q	R	F	A	F	L	T	Q	G	G	A	A	P	E	T	P	N	P	R	L	P	P	L	D	S
Secondary structure
SS confidence
Disorder																																											?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	I	L	G	G	Y	I	A	P	D	N	L	T	I	T	L	S	V	G	H	S	L	F	D	E	R	F	G	L	A	P	Q	M	P	K	K	L	Q	K	M	T	R	F	P	N	D	S	L	D	A	A	L	C	H	G	D	V	L	L	Q
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?																						?					?					?			?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	C	A	N	T	Q	D	T	V	I	H	A	L	R	D	I	I	K	H	T	P	D	L	L	S	V	R	W	K	R	E	G	F	I	S	D	H	A	A	R	S	K	G	K	E	T	P	I	N	L	L	G	F	K	D	G	T	A	N	P
Secondary structure
SS confidence
Disorder																																					?	?	?	?	?	?	?	?	?	?	?	?	?										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		D	S	Q	N	D	K	L	M	Q	K	V	V	W	V	T	A	D	Q	Q	E	P	A	W	T	I	G	G	S	Y	Q	A	V	R	L	I	Q	F	R	V	E	F	W	D	R	T	P	L	K	E	Q	Q	T	I	F	G	R	D	K	Q	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?														?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		G	A	P	L	G	M	Q	H	E	H	D	V	P	D	Y	A	S	D	P	E	G	K	V	I	A	L	D	S	H	I	R	L	A	N	P	R	T	A	E	S	E	S	S	L	M	L	R	R	G	Y	S	Y	S	L	G	V	T	N	S	G
Secondary structure
SS confidence
Disorder			?			?	?	?	?											?															?	?	?	?	?	?	?	?	?	?											?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		Q	L	D	M	G	L	L	F	V	C	Y	Q	H	D	L	E	K	G	F	L	T	V	Q	K	R	L	N	G	E	A	L	E	E	Y	V	K	P	I	G	G	G	Y	F	F	A	L	P	G	V	K	D	A	N	D	Y	F	G	S	A	L
Secondary structure
SS confidence
Disorder		?																																																				?
Disorder confidence
		.	.	.
Sequence		L	R	V
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2wx6 chain B Region: 48 - 423 Aligned: 368 Modelled: 376 Confidence: 100.0% Identity: 100% PDB header:oxidoreductase Chain: B: PDB Molecule:peroxidase ycdb; PDBTitle: x-ray crystallographic structure of e. coli apo-efeb Phyre2 PDB 2iiz chain A domain 1 Region: 59 - 415 Aligned: 296 Modelled: 316 Confidence: 100.0% Identity: 24% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Dyp-type peroxidase-like Phyre2 PDB 2gvk chain A domain 1 Region: 56 - 407 Aligned: 292 Modelled: 315 Confidence: 100.0% Identity: 20% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Dyp-type peroxidase-like Phyre2 PDB 3qns chain A Region: 60 - 407 Aligned: 290 Modelled: 302 Confidence: 100.0% Identity: 23% PDB header:oxidoreductase Chain: A: PDB Molecule:dyp peroxidase; PDBTitle: dypb from rhodococcus jostii rha1, crystal form 2 Phyre2 PDB 2d3q chain A domain 1 Region: 57 - 418 Aligned: 332 Modelled: 341 Confidence: 100.0% Identity: 25% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Dyp-type peroxidase-like Phyre2 PDB 2e76 chain D Region: 8 - 63 Aligned: 56 Modelled: 56 Confidence: 89.5% Identity: 11% PDB header:photosynthesis Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus Phyre2 PDB 3nn4 chain C Region: 172 - 403 Aligned: 160 Modelled: 181 Confidence: 73.8% Identity: 19% PDB header:oxidoreductase Chain: C: PDB Molecule:chlorite dismutase; PDBTitle: structure of chlorite dismutase from candidatus nitrospira defluvii2 r173k mutant Phyre2 PDB 1p84 chain E Region: 6 - 35 Aligned: 30 Modelled: 30 Confidence: 69.1% Identity: 10% PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: hdbt inhibited yeast cytochrome bc1 complex Phyre2 PDB 2fyn chain O Region: 13 - 63 Aligned: 51 Modelled: 51 Confidence: 69.1% Identity: 18% PDB header:oxidoreductase Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex Phyre2 PDB 2fyu chain E Region: 1 - 33 Aligned: 33 Modelled: 33 Confidence: 68.7% Identity: 12% PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit, PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor Phyre2 PDB 2pq4 chain B Region: 13 - 40 Aligned: 28 Modelled: 28 Confidence: 53.6% Identity: 21% PDB header:chaperone/oxidoreductase Chain: B: PDB Molecule:periplasmic nitrate reductase precursor; PDBTitle: nmr solution structure of napd in complex with napa1-352 signal peptide Phyre2 PDB 2vxh chain F Region: 172 - 386 Aligned: 145 Modelled: 161 Confidence: 47.4% Identity: 17% PDB header:oxidoreductase Chain: F: PDB Molecule:chlorite dismutase; PDBTitle: the crystal structure of chlorite dismutase: a detox enzyme2 producing molecular oxygen Phyre2 PDB 1t0t chain V Region: 175 - 212 Aligned: 38 Modelled: 38 Confidence: 36.3% Identity: 21% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Chlorite dismutase-like Phyre2 PDB 2hpg chain B Region: 231 - 293 Aligned: 56 Modelled: 63 Confidence: 33.4% Identity: 13% PDB header:ligand binding protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding PDBTitle: the crystal structure of a thermophilic trap periplasmic2 binding protein Phyre2 PDB 3b0v chain D Region: 177 - 206 Aligned: 30 Modelled: 30 Confidence: 33.3% Identity: 17% PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Phyre2 PDB 2hzk chain B Region: 232 - 293 Aligned: 58 Modelled: 62 Confidence: 25.0% Identity: 14% PDB header:ligand binding, transport protein Chain: B: PDB Molecule:trap-t family sorbitol/mannitol transporter, periplasmic PDBTitle: crystal structures of a sodium-alpha-keto acid binding subunit from a2 trap transporter in its open form Phyre2 PDB 3b50 chain A Region: 232 - 293 Aligned: 55 Modelled: 62 Confidence: 24.3% Identity: 16% PDB header:transport protein Chain: A: PDB Molecule:sialic acid-binding periplasmic protein siap; PDBTitle: structure of h. influenzae sialic acid binding protein2 bound to neu5ac. Phyre2 PDB 2pfy chain A Region: 232 - 293 Aligned: 55 Modelled: 62 Confidence: 24.1% Identity: 15% PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp7, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid Phyre2 PDB 3gyy chain C Region: 232 - 293 Aligned: 55 Modelled: 62 Confidence: 18.1% Identity: 18% PDB header:transport protein Chain: C: PDB Molecule:periplasmic substrate binding protein; PDBTitle: the ectoine binding protein of the teaabc trap transporter teaa in the2 apo-state Phyre2 PDB 1vdh chain A Region: 175 - 209 Aligned: 35 Modelled: 35 Confidence: 18.0% Identity: 14% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Chlorite dismutase-like Phyre2 1 c2wx6B_ 2 d2iiza1 3 d2gvka1 4 c3qnsA_ 5 d2d3qa1 6 c2e76D_ 7 c3nn4C_ 8 c1p84E_ 9 c2fynO_ 10 c2fyuE_ 11 c2pq4B_ 12 c2vxhF_ 13 d1t0tv_ 14 c2hpgB_ 15 c3b0vD_ 16 c2hzkB_ 17 c3b50A_ 18 c2pfyA_ 19 c3gyyC_ 20 d1vdha_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2wx6B_ 100.0 100 PDB header:oxidoreductase Chain: B: PDB Molecule:peroxidase ycdb; PDBTitle: x-ray crystallographic structure of e. coli apo-efeb 2 d2iiza1 100.0 24 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Dyp-type peroxidase-like 3 d2gvka1 100.0 20 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Dyp-type peroxidase-like 4 c3qnsA_ 100.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:dyp peroxidase; PDBTitle: dypb from rhodococcus jostii rha1, crystal form 2 5 d2d3qa1 100.0 25 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Dyp-type peroxidase-like 6 c2e76D_ 89.5 11 PDB header:photosynthesis Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 7 c3nn4C_ 73.8 19 PDB header:oxidoreductase Chain: C: PDB Molecule:chlorite dismutase; PDBTitle: structure of chlorite dismutase from candidatus nitrospira defluvii2 r173k mutant 8 c1p84E_ 69.1 10 PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 9 c2fynO_ 69.1 18 PDB header:oxidoreductase Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex 10 c2fyuE_ 68.7 12 PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit, PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor 11 c2pq4B_ 53.6 21 PDB header:chaperone/oxidoreductase Chain: B: PDB Molecule:periplasmic nitrate reductase precursor; PDBTitle: nmr solution structure of napd in complex with napa1-352 signal peptide 12 c2vxhF_ 47.4 17 PDB header:oxidoreductase Chain: F: PDB Molecule:chlorite dismutase; PDBTitle: the crystal structure of chlorite dismutase: a detox enzyme2 producing molecular oxygen 13 d1t0tv_ 36.3 21 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Chlorite dismutase-like 14 c2hpgB_ 33.4 13 PDB header:ligand binding protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding PDBTitle: the crystal structure of a thermophilic trap periplasmic2 binding protein 15 c3b0vD_ 33.3 17 PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna 16 c2hzkB_ 25.0 14 PDB header:ligand binding, transport protein Chain: B: PDB Molecule:trap-t family sorbitol/mannitol transporter, periplasmic PDBTitle: crystal structures of a sodium-alpha-keto acid binding subunit from a2 trap transporter in its open form 17 c3b50A_ 24.3 16 PDB header:transport protein Chain: A: PDB Molecule:sialic acid-binding periplasmic protein siap; PDBTitle: structure of h. influenzae sialic acid binding protein2 bound to neu5ac. 18 c2pfyA_ 24.1 15 PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp7, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid 19 c3gyyC_ 18.1 18 PDB header:transport protein Chain: C: PDB Molecule:periplasmic substrate binding protein; PDBTitle: the ectoine binding protein of the teaabc trap transporter teaa in the2 apo-state 20 d1vdha_ 18.0 14 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Chlorite dismutase-like 21 c3fxbB_ not modelled 17.3 16 PDB header:transport protein Chain: B: PDB Molecule:trap dicarboxylate transporter, dctp subunit; PDBTitle: crystal structure of the ectoine-binding protein ueha 22 d1vjja1 not modelled 15.5 35 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Transglutaminase N-terminal domain 23 d1g0da1 not modelled 15.3 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Transglutaminase N-terminal domain 24 c3njqB_ not modelled 14.8 25 PDB header:viral protein/inhibitor Chain: B: PDB Molecule:orf 17; PDBTitle: crystal structure of kaposi's sarcoma-associated herpesvirus protease2 in complex with dimer disruptor 25 d1kfia4 not modelled 14.8 33 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 26 d2q3za1 not modelled 14.6 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Transglutaminase N-terminal domain 27 d3pmga4 not modelled 14.1 24 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 28 c2r8kB_ not modelled 12.9 6 PDB header:replication, transferase/dna Chain: B: PDB Molecule:dna polymerase eta; PDBTitle: structure of the eukaryotic dna polymerase eta in complex with 1,2-2 d(gpg)-cisplatin containing dna 29 d1nmla2 not modelled 12.9 33 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 30 d1ex0a1 not modelled 12.6 23 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Transglutaminase N-terminal domain 31 d1jiha2 not modelled 12.1 6 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 32 c2pfzA_ not modelled 11.9 11 PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp6, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid 33 d1uoua3 not modelled 11.8 11 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 34 c1jihA_ not modelled 11.7 6 PDB header:translation Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: yeast dna polymerase eta 35 d2pbka1 not modelled 11.7 25 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 36 c3hq7A_ not modelled 11.6 23 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: ccpa from g. sulfurreducens, g94k/k97q/r100i variant 37 c1yqmA_ not modelled 11.3 17 PDB header:hydrolase/dna Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: catalytically inactive human 8-oxoguanine glycosylase2 crosslinked to 7-deazaguanine containing dna 38 c2x29A_ not modelled 11.0 25 PDB header:cell adhesion Chain: A: PDB Molecule:tumor necrosis factor ligand superfamily member PDBTitle: crystal structure of human4-1bb ligand ectodomain 39 c2aq4A_ not modelled 10.8 23 PDB header:transferase Chain: A: PDB Molecule:dna repair protein rev1; PDBTitle: ternary complex of the catalytic core of rev1 with dna and dctp. 40 c2oh2B_ not modelled 10.5 9 PDB header:transferase/dna Chain: B: PDB Molecule:dna polymerase kappa; PDBTitle: ternary complex of human dna polymerase 41 d1tdja3 not modelled 9.4 27 Fold:Ferredoxin-like Superfamily:ACT-like Family:Allosteric threonine deaminase C-terminal domain 42 d1na6a1 not modelled 9.4 40 Fold:DNA-binding pseudobarrel domain Superfamily:DNA-binding pseudobarrel domain Family:Type II restriction endonuclease effector domain 43 c3eq1A_ not modelled 9.0 25 PDB header:transferase Chain: A: PDB Molecule:porphobilinogen deaminase; PDBTitle: the crystal structure of human porphobilinogen deaminase at2 2.8a resolution 44 d1at3a_ not modelled 8.4 19 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 45 d2i09a2 not modelled 7.9 21 Fold:DeoB insert domain-like Superfamily:DeoB insert domain-like Family:DeoB insert domain-like 46 c3gqcB_ not modelled 7.8 9 PDB header:transferase/dna Chain: B: PDB Molecule:dna repair protein rev1; PDBTitle: structure of human rev1-dna-dntp ternary complex 47 c2p5xB_ not modelled 7.8 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:n-acetylserotonin o-methyltransferase-like protein; PDBTitle: crystal structure of maf domain of human n-acetylserotonin o-2 methyltransferase-like protein 48 c3ps9A_ not modelled 7.7 23 PDB header:transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of mnmc from e. coli 49 d1o6ea_ not modelled 7.2 16 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 50 c3mr2A_ not modelled 7.1 6 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: human dna polymerase eta in complex with normal dna and incoming2 nucleotide (nrm) 51 c2vfyA_ not modelled 6.9 20 PDB header:hydrolase Chain: A: PDB Molecule:akap18 delta; PDBTitle: akap18 delta central domain 52 c1nmlA_ not modelled 6.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:di-haem cytochrome c peroxidase; PDBTitle: di-haemic cytochrome c peroxidase from pseudomonas nautica 617, form2 in (ph 4.0) 53 c2c1uB_ not modelled 6.8 23 PDB header:oxidoreductase Chain: B: PDB Molecule:di-haem cytochrome c peroxidase; PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from paracoccus pantotrophus - oxidised form 54 d1eb7a2 not modelled 6.7 16 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 55 c3pt1A_ not modelled 6.7 11 PDB header:hydrolase Chain: A: PDB Molecule:upf0364 protein ymr027w; PDBTitle: structure of duf89 from saccharomyces cerevisiae co-crystallized with2 f6p. 56 c2e1aD_ not modelled 6.6 11 PDB header:transcription Chain: D: PDB Molecule:75aa long hypothetical regulatory protein asnc; PDBTitle: crystal structure of ffrp-dm1 57 c1ko9A_ not modelled 5.8 16 PDB header:hydrolase Chain: A: PDB Molecule:8-oxoguanine dna glycosylase; PDBTitle: native structure of the human 8-oxoguanine dna glycosylase2 hogg1 58 c2qdrA_ not modelled 5.7 12 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative dioxygenase (npun_f5605) from nostoc2 punctiforme pcc 73102 at 2.60 a resolution 59 c3dtzB_ not modelled 5.7 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative chlorite dismutase ta0507; PDBTitle: crystal structure of putative chlorite dismutase ta0507 60 c1cq0A_ not modelled 5.6 78 PDB header:de novo protein Chain: A: PDB Molecule:protein (new hypothalamic neuropeptide/orexin- PDBTitle: solution structure of a human hypocretin-2/orexin-2 b'solution structure of a human hypocretin-2/orexin-b ' 61 d1iega_ not modelled 5.6 20 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 62 d2cg4a2 not modelled 5.5 17 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 63 c1t94B_ not modelled 5.3 9 PDB header:replication Chain: B: PDB Molecule:polymerase (dna directed) kappa; PDBTitle: crystal structure of the catalytic core of human dna2 polymerase kappa

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0