PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2hpgB_

Fold library id	PDB Header	Molecule	Title
c2hpgB_	PDB header: ligand binding protein	Chain: B: PDB Molecule: abc transporter, periplasmic substrate-binding	PDBTitle: the crystal structure of a thermophilic trap periplasmic2 binding protein

Links to external resources
Added to library: Tue Mar 16 14:08:12 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence F G A K Y T L R F G H V L A P G E P Y H Q A F L K W A K A V E E K T N G D V R I E V F P S S Q L G V E E D I I E Q I R X G A P V G W N T D S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S T T T T S
T T T T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A R L G X Y V K D I G V X N L A Y F I D F X G A K T P E E A I E V L K K I K Q S P T X Q K W L K E L E Q R F G I K V L S F Y W V Q G Y R H F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S G G G G G G G S T T T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V T N K P I R K P E D L N G L R I R T P G A P A W Q E S I R S L G A I P V A V N F G E I Y T A V Q T R A V D G A E L T Y A N V Y N G G L Y E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S G G G G T T
S S T
G G G T T S
S
T T G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence V L K Y X S E T G H F L L I N F E I V S A D W F N S L P K E Y Q K I I E E E X D K A G I E V S L K I X K E L E E E Y K Q K C I E K G X A V I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
T T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . .

Sequence P A S E I D K E A F X E K A K Q A Y K N L G L E N A L N Q L I K E V K G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	F	G	A	K	Y	T	L	R	F	G	H	V	L	A	P	G	E	P	Y	H	Q	A	F	L	K	W	A	K	A	V	E	E	K	T	N	G	D	V	R	I	E	V	F	P	S	S	Q	L	G	V	E	E	D	I	I	E	Q	I	R	X	G	A	P	V	G	W	N	T	D	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S											T	T	S	T																T	T	T	S											T	T	T										T	T		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	R	L	G	X	Y	V	K	D	I	G	V	X	N	L	A	Y	F	I	D	F	X	G	A	K	T	P	E	E	A	I	E	V	L	K	K	I	K	Q	S	P	T	X	Q	K	W	L	K	E	L	E	Q	R	F	G	I	K	V	L	S	F	Y	W	V	Q	G	Y	R	H	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T	S	G	G	G	G	G	G	G	S	T	T					T	T			S														S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	T	N	K	P	I	R	K	P	E	D	L	N	G	L	R	I	R	T	P	G	A	P	A	W	Q	E	S	I	R	S	L	G	A	I	P	V	A	V	N	F	G	E	I	Y	T	A	V	Q	T	R	A	V	D	G	A	E	L	T	Y	A	N	V	Y	N	G	G	L	Y	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S				S	G	G	G	G	T	T							S	S											T								G	G	G							T	T	S		S												T	T	G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	V	L	K	Y	X	S	E	T	G	H	F	L	L	I	N	F	E	I	V	S	A	D	W	F	N	S	L	P	K	E	Y	Q	K	I	I	E	E	E	X	D	K	A	G	I	E	V	S	L	K	I	X	K	E	L	E	E	E	Y	K	Q	K	C	I	E	K	G	X	A	V	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																										S																										T												T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Sequence	P	A	S	E	I	D	K	E	A	F	X	E	K	A	K	Q	A	Y	K	N	L	G	L	E	N	A	L	N	Q	L	I	K	E	V	K	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G	S																T	T