Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP77199
DateThu Jan 5 12:26:15 GMT 2012
Unique Job IDcc96b6951013575a

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3sljA_
Top template information
PDB header:protein transport
Chain: A: PDB Molecule:serine protease espp;
PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant
Confidence and coverage
Confidence:100.0% Coverage: 30%
291 residues ( 30% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
808 residues ( 83%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MHSWKKKLVVSQLALACTLAITSQANAANYDTWTYIDNPVTALDWDHMDKAGTVDGNYVN
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   .........70.........80.........90.........100.........110.........120
Sequence  YSGFVYYNNTNGDFDQSFNGDTVNGTISTYYLNHDYADSTANQLDISNSVIHGSITSMLP
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   .........130.........140.........150.........160.........170.........180
Sequence  GGYYDRFDADGNNLGGYDFYTDAVVDTHWRDGDVFTLNIANTTIDDDYEALYFTDSYKDG
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   .........190.........200.........210.........220.........230.........240
Sequence  DVTKHTNETFDTSEGVAVNLDVESNINISNNSRVAGIALSQGNTYNETYTTESHTWDNNI
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   .........250.........260.........270.........280.........290.........300
Sequence  SVKDSTVTSGSNYILDSNTYGKTGHFGNSDEPSDYAGPGDVAMSFTASGSDYAMKNNVFL
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   .........310.........320.........330.........340.........350.........360
Sequence  SNSTLMGDVAFTSTWNSNFDPNGHDSNGDGVKDTNGGWTDDSLNVDELNLTLDNGSKWVG
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   .........370.........380.........390.........400.........410.........420
Sequence  QAIYNVAETSAMYDVATNSLTPDATYENNDWKRVVDDKVFQSGVFNVALNNGSEWDTTGR
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   .........430.........440.........450.........460.........470.........480
Sequence  SIVDTLTVNNGSQVNVSESKLTSDTIDLTNGSSLNIGEDGYVDTDHLTINSYSTVALTES
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   .........490.........500.........510.........520.........530.........540
Sequence  TGWGADYNLYANTITVTNGGVLDVNVDQFDTEAFRTDKLELTSGNIADHNGNVVSGVFDI
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   .........550.........560.........570.........580.........590.........600
Sequence  HSSDYVLNADLVNDRTWDTSKSNYGYGIVAMNSDGHLTINGNGDVDNGTELDNSSVDNVV
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   .........610.........620.........630.........640.........650.........660
Sequence  AATGNYKVRIDNATGAGAIADYKDKEIIYVNDVNSNATFSAANKADLGAYTYQAEQRGNT
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   .........670.........680.........690.........700.........710.........720
Sequence  VVLQQMELTDYANMALSIPSANTNIWNLEQDTVGTRLTNSRHGLADNGGAWVSYFGGNFN
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   .........730.........740.........750.........760.........770.........780
Sequence  GDNGTINYDQDVNGIMVGVDTKIDGNNAKWIVGAAAGFAKGDMNDRSGQVDQDSQTAYIY
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   .........790.........800.........810.........820.........830.........840
Sequence  SSAHFANNVFVDGSLSYSHFNNDLSATMSNGTYVDGSTNSDAWGFGLKAGYDFKLGDAGY
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   .........850.........860.........870.........880.........890.........900
Sequence  VTPYGSVSGLFQSGDDYQLSNDMKVDGQSYDSMRYELGVDAGYTFTYSEDQALTPYFKLA
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   .........910.........920.........930.........940.........950.........960
Sequence  YVYDDSNNDNDVNGDSIDNGTEGSAVRVGLGTQFSFTKNFSAYTDANYLGGGDVDQDWSA
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   ........
Sequence  NVGVKYTW
Secondary structure 
SS confidence 







Disorder 






?
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3slj chain A

3D model

Region: 671 - 968
Aligned: 291
Modelled: 298
Confidence: 100.0%
Identity: 20%
PDB header:protein transport
Chain: A: PDB Molecule:serine protease espp;
PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant

Phyre2

PDB 3aeh chain B

3D model

Region: 671 - 968
Aligned: 267
Modelled: 286
Confidence: 100.0%
Identity: 19%
PDB header:hydrolase
Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter;
PDBTitle: integral membrane domain of autotransporter hbp

Phyre2

PDB 3qq2 chain C

3D model

Region: 706 - 968
Aligned: 248
Modelled: 263
Confidence: 100.0%
Identity: 22%
PDB header:membrane protein/protein transport
Chain: C: PDB Molecule:brka autotransporter;
PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka

Phyre2

PDB 2qom chain B

3D model

Region: 693 - 968
Aligned: 261
Modelled: 275
Confidence: 100.0%
Identity: 21%
PDB header:hydrolase
Chain: B: PDB Molecule:serine protease espp;
PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain.

Phyre2

PDB 1uyn chain X

3D model

Region: 677 - 968
Aligned: 274
Modelled: 292
Confidence: 100.0%
Identity: 15%
Fold: Transmembrane beta-barrels
Superfamily: Autotransporter
Family: Autotransporter

Phyre2

PDB 3kvn chain A

3D model

Region: 671 - 968
Aligned: 291
Modelled: 298
Confidence: 100.0%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:esterase esta;
PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa

Phyre2

PDB 1g90 chain A

3D model

Region: 786 - 968
Aligned: 160
Modelled: 183
Confidence: 99.3%
Identity: 18%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 2k0l chain A

3D model

Region: 785 - 968
Aligned: 169
Modelled: 184
Confidence: 99.3%
Identity: 16%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.

Phyre2

PDB 1qjp chain A

3D model

Region: 786 - 968
Aligned: 133
Modelled: 151
Confidence: 99.2%
Identity: 16%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 1p4t chain A

3D model

Region: 784 - 968
Aligned: 150
Modelled: 172
Confidence: 99.1%
Identity: 19%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 2x27 chain X

3D model

Region: 784 - 968
Aligned: 177
Modelled: 185
Confidence: 99.1%
Identity: 15%
PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein oprg;
PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa

Phyre2

PDB 2jmm chain A

3D model

Region: 786 - 968
Aligned: 145
Modelled: 166
Confidence: 99.1%
Identity: 17%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein

Phyre2

PDB 3qra chain A

3D model

Region: 753 - 968
Aligned: 147
Modelled: 158
Confidence: 99.1%
Identity: 18%
PDB header:cell invasion
Chain: A: PDB Molecule:attachment invasion locus protein;
PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis

Phyre2

PDB 3nb3 chain C

3D model

Region: 786 - 968
Aligned: 133
Modelled: 147
Confidence: 99.0%
Identity: 17%
PDB header:virus
Chain: C: PDB Molecule:outer membrane protein a;
PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components

Phyre2

PDB 2iwv chain D

3D model

Region: 714 - 968
Aligned: 226
Modelled: 246
Confidence: 99.0%
Identity: 17%
PDB header:ion channel
Chain: D: PDB Molecule:outer membrane protein g;
PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation

Phyre2

PDB 2f1t chain B

3D model

Region: 785 - 968
Aligned: 162
Modelled: 184
Confidence: 98.9%
Identity: 13%
PDB header:membrane protein
Chain: B: PDB Molecule:outer membrane protein w;
PDBTitle: outer membrane protein ompw

Phyre2

PDB 1qj8 chain A

3D model

Region: 821 - 968
Aligned: 130
Modelled: 148
Confidence: 98.7%
Identity: 17%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 2x4m chain D

3D model

Region: 821 - 968
Aligned: 145
Modelled: 148
Confidence: 98.5%
Identity: 20%
PDB header:hydrolase
Chain: D: PDB Molecule:coagulase/fibrinolysin;
PDBTitle: yersinia pestis plasminogen activator pla

Phyre2

PDB 2wjq chain A

3D model

Region: 769 - 968
Aligned: 151
Modelled: 160
Confidence: 98.5%
Identity: 16%
PDB header:transport protein
Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel
PDBTitle: nanc porin structure in hexagonal crystal form.

Phyre2

PDB 2lhf chain A

3D model

Region: 844 - 968
Aligned: 121
Modelled: 125
Confidence: 98.2%
Identity: 16%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein h1;
PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles

Phyre2

PDB 3ml3 chain A

3D model

Region: 523 - 667
Aligned: 143
Modelled: 143
Confidence: 96.2%
Identity: 17%
PDB header:protein transport
Chain: A: PDB Molecule:outer membrane protein icsa autotransporter;
PDBTitle: crystal structure of the icsa autochaperone region

Phyre2

PDB 1dab chain A

3D model

Region: 161 - 670
Aligned: 510
Modelled: 510
Confidence: 92.9%
Identity: 10%
Fold: Single-stranded right-handed beta-helix
Superfamily: Pectin lyase-like
Family: Virulence factor P.69 pertactin

Phyre2
1

c3sljA_
2

c3aehB_
3

c3qq2C_
4

c2qomB_
5

d1uynx_
6

c3kvnA_
7

d1g90a_
8

c2k0lA_
9

d1qjpa_
10

d1p4ta_
11

c2x27X_
12

c2jmmA_
13

c3qraA_
14

c3nb3C_
15

c2iwvD_
16

c2f1tB_
17

d1qj8a_
18

c2x4mD_
19

c2wjqA_
20

c2lhfA_
21



22



23



24



25



26



27



28



29

c3ml3A_
30



31



32



33



34



35

d1daba_
36



37



38



39



40



41



42



43



44



45



46



47



48



49



50



51



52



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3sljA_



100.0 20 PDB header:protein transport
Chain: A: PDB Molecule:serine protease espp;
PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant
2c3aehB_



100.0 19 PDB header:hydrolase
Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter;
PDBTitle: integral membrane domain of autotransporter hbp
3c3qq2C_



100.0 22 PDB header:membrane protein/protein transport
Chain: C: PDB Molecule:brka autotransporter;
PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka
4c2qomB_



100.0 21 PDB header:hydrolase
Chain: B: PDB Molecule:serine protease espp;
PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain.
5d1uynx_



100.0 15 Fold:Transmembrane beta-barrels
Superfamily:Autotransporter
Family:Autotransporter
6c3kvnA_



100.0 18 PDB header:hydrolase
Chain: A: PDB Molecule:esterase esta;
PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa
7d1g90a_



99.3 18 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
8c2k0lA_



99.3 16 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.
9d1qjpa_



99.2 16 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
10d1p4ta_



99.1 19 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
11c2x27X_



99.1 15 PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein oprg;
PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa
12c2jmmA_



99.1 17 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein
13c3qraA_



99.1 18 PDB header:cell invasion
Chain: A: PDB Molecule:attachment invasion locus protein;
PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis
14c3nb3C_



99.0 17 PDB header:virus
Chain: C: PDB Molecule:outer membrane protein a;
PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components
15c2iwvD_



99.0 17 PDB header:ion channel
Chain: D: PDB Molecule:outer membrane protein g;
PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation
16c2f1tB_



98.9 13 PDB header:membrane protein
Chain: B: PDB Molecule:outer membrane protein w;
PDBTitle: outer membrane protein ompw
17d1qj8a_



98.7 17 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
18c2x4mD_



98.5 20 PDB header:hydrolase
Chain: D: PDB Molecule:coagulase/fibrinolysin;
PDBTitle: yersinia pestis plasminogen activator pla
19c2wjqA_



98.5 16 PDB header:transport protein
Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel
PDBTitle: nanc porin structure in hexagonal crystal form.
20c2lhfA_



98.2 16 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein h1;
PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles
21d1i78a_



not modelled 98.1 20 Fold:Transmembrane beta-barrels
Superfamily:OMPT-like
Family:Outer membrane protease OMPT
22d1t16a_



not modelled 97.3 13 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Outer membrane protein transport protein
23c3brzA_



not modelled 97.0 15 PDB header:transport protein
Chain: A: PDB Molecule:todx;
PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx
24d2vdfa1



not modelled 96.8 18 Fold:Transmembrane beta-barrels
Superfamily:OMPT-like
Family:Outer membrane adhesin/invasin OpcA
25d3prna_



not modelled 96.7 18 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
26c3dwoX_



not modelled 96.6 10 PDB header:membrane protein
Chain: X: PDB Molecule:probable outer membrane protein;
PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue
27d2pora_



not modelled 96.6 15 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
28c2iahA_



not modelled 96.5 13 PDB header:membrane protein
Chain: A: PDB Molecule:ferripyoverdine receptor;
PDBTitle: crystal structure of the ferripyoverdine receptor of the outer2 membrane of pseudomonas aeruginosa bound to ferripyoverdine.
29c3ml3A_



96.2 17 PDB header:protein transport
Chain: A: PDB Molecule:outer membrane protein icsa autotransporter;
PDBTitle: crystal structure of the icsa autochaperone region
30c3bryB_



not modelled 95.7 13 PDB header:transport protein
Chain: B: PDB Molecule:tbux;
PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux
31c3a2rX_



not modelled 95.1 13 PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein ii;
PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis
32c1xkhC_



not modelled 93.3 11 PDB header:membrane protein
Chain: C: PDB Molecule:ferripyoverdine receptor;
PDBTitle: pyoverdine outer membrane receptor fpva from pseudomonas aeruginosa2 pao1 bound to pyoverdine
33c2hdiA_



not modelled 93.1 17 PDB header:protein transport,antimicrobial protein
Chain: A: PDB Molecule:colicin i receptor;
PDBTitle: crystal structure of the colicin i receptor cir from e.coli in complex2 with receptor binding domain of colicin ia.
34d1osma_



not modelled 93.1 26 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
35d1daba_



92.9 10 Fold:Single-stranded right-handed beta-helix
Superfamily:Pectin lyase-like
Family:Virulence factor P.69 pertactin
36d2zfga1



not modelled 92.5 16 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
37c3nsgA_



not modelled 91.6 13 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein f;
PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi
38d2fgqx1



not modelled 91.2 14 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
39c2grxB_



not modelled 91.1 11 PDB header:metal transport
Chain: B: PDB Molecule:ferrichrome-iron receptor;
PDBTitle: crystal structure of tonb in complex with fhua, e. coli2 outer membrane receptor for ferrichrome
40d1by5a_



not modelled 86.0 14 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Ligand-gated protein channel
41d1phoa_



not modelled 85.0 18 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
42c3qlbA_



not modelled 83.4 13 PDB header:metal transport
Chain: A: PDB Molecule:enantio-pyochelin receptor;
PDBTitle: enantiopyochelin outer membrane tonb-dependent transporter from2 pseudomonas fluorescens bound to the ferri-enantiopyochelin
43c2ervA_



not modelled 81.3 13 PDB header:membrane protein
Chain: A: PDB Molecule:hypothetical protein paer03002360;
PDBTitle: crystal structure of the outer membrane enzyme pagl
44c1xkwA_



not modelled 79.6 10 PDB header:membrane protein
Chain: A: PDB Molecule:fe(iii)-pyochelin receptor;
PDBTitle: pyochelin outer membrane receptor fpta from pseudomonas2 aeruginosa
45c1po3A_



not modelled 50.1 10 PDB header:membrane protein
Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca
PDBTitle: crystal structure of ferric citrate transporter feca in2 complex with ferric citrate
46d1kmoa_



not modelled 40.5 11 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Ligand-gated protein channel
47d2gr8a1



not modelled 38.9 16 Fold:Pili subunits
Superfamily:Pili subunits
Family:YadA C-terminal domain-like
48d2gufa1



not modelled 38.8 13 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Ligand-gated protein channel
49c2gr7C_



not modelled 35.4 16 PDB header:membrane protein
Chain: C: PDB Molecule:adhesin;
PDBTitle: hia 992-1098
50d2gr7a1



not modelled 35.4 16 Fold:Pili subunits
Superfamily:Pili subunits
Family:YadA C-terminal domain-like
51c3emoA_



not modelled 17.6 14 PDB header:membrane protein/cell adhesion
Chain: A: PDB Molecule:hia (adhesin);
PDBTitle: crystal structure of transmembrane hia 973-1098
52c2o4vA_



not modelled 17.5 15 PDB header:membrane protein
Chain: A: PDB Molecule:porin p;
PDBTitle: an arginine ladder in oprp mediates phosphate specific transfer across2 the outer membrane
53c1qd6C_



not modelled 13.4 22 PDB header:membrane protein
Chain: C: PDB Molecule:protein (outer membrane phospholipase (ompla));
PDBTitle: outer membrane phospholipase a from escherichia coli
54c3fhhA_



not modelled 13.0 7 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane heme receptor shua;
PDBTitle: crystal structure of the heme/hemoglobin outer membrane2 transporter shua from shigella dysenteriae
55d2f0ca1



not modelled 12.8 29 Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Lactophage receptor-binding protein head domain
56c2y0hA_



not modelled 12.7 13 PDB header:transport protein
Chain: A: PDB Molecule:probable porin;
PDBTitle: crystal structure of pseudomonas aeruginosa opdl
57c3syjA_



not modelled 10.2 10 PDB header:cell adhesion
Chain: A: PDB Molecule:adhesion and penetration protein autotransporter;
PDBTitle: crystal structure of the haemophilus influenzae hap adhesin
58c3rbhC_



not modelled 10.0 12 PDB header:transport protein
Chain: C: PDB Molecule:alginate production protein alge;
PDBTitle: structure of alginate export protein alge from pseudomonas aeruginosa
59d1nrja_



not modelled 8.1 33 Fold:Profilin-like
Superfamily:SNARE-like
Family:SRP alpha N-terminal domain-like
60d1g5aa1



not modelled 7.8 27 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
61c3jtyB_



not modelled 7.2 8 PDB header:transport protein
Chain: B: PDB Molecule:benf-like porin;
PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5
62c3cslB_



not modelled 6.6 9 PDB header:membrane protein/heme binding protein
Chain: B: PDB Molecule:hasr protein;
PDBTitle: structure of the serratia marcescens hemophore receptor hasr in2 complex with its hemophore hasa and heme
63d1fepa_



not modelled 6.5 14 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Ligand-gated protein channel
64c3dzmB_



not modelled 5.5 19 PDB header:unknown function
Chain: B: PDB Molecule:hypothetical conserved protein;
PDBTitle: crystal structure of a major outer membrane protein from thermus2 thermophilus hb27

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0