Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	M	T	K	I	K	L	L	M	L	I	I	F	Y	L	I	I	S	A	S	A	H	A	A	G	G	I	A	L	G	A	T	R	I	I	Y	P	A	D	A	K	Q	T	A	V	W	I	R	N	S	H	T	N	E	R	F	L	V	N	S
Secondary structure
SS confidence
Disorder		?	?	?	?																		?	?	?	?	?				?									?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		W	I	E	N	S	S	G	V	K	E	K	S	F	I	I	T	P	P	L	F	V	S	E	P	K	S	E	N	T	L	R	I	I	Y	T	G	P	P	L	A	A	D	R	E	S	L	F	W	M	N	V	K	T	I	P	S	V	D	K	N
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?	?		?	?							?						?													?	?	?	?															?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	L	N	G	R	N	V	L	Q	L	A	I	L	S	R	M	K	L	F	L	R	P	I	Q	L	Q	E	L	P	A	E	A	P	D	T	L	K	F	S	R	S	G	N	Y	I	N	V	H	N	P	S	P	F	Y	V	T	L	V	N	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																			?	?	?	?					?									?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Sequence		Q	V	G	S	Q	K	L	G	N	A	M	A	A	P	R	V	N	S	Q	I	P	L	P	S	G	V	Q	G	K	L	K	F	Q	T	V	N	D	Y	G	S	V	T	P	V	R	E	V	N	L	N
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?	?	?	?							?					?		?																				?					?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1qun chain A Region: 26 - 230 Aligned: 199 Modelled: 205 Confidence: 100.0% Identity: 48% PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli Phyre2 PDB 1z9s chain A Region: 22 - 229 Aligned: 195 Modelled: 208 Confidence: 100.0% Identity: 32% PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex Phyre2 PDB 2co7 chain B Region: 21 - 229 Aligned: 196 Modelled: 209 Confidence: 100.0% Identity: 29% PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) Phyre2 PDB 1l4i chain A Region: 26 - 229 Aligned: 188 Modelled: 204 Confidence: 100.0% Identity: 45% PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae Phyre2 PDB 1qpx chain A Region: 26 - 224 Aligned: 184 Modelled: 199 Confidence: 100.0% Identity: 29% PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers Phyre2 PDB 3f6i chain B Region: 26 - 223 Aligned: 179 Modelled: 193 Confidence: 100.0% Identity: 27% PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee Phyre2 PDB 3q48 chain B Region: 28 - 227 Aligned: 177 Modelled: 183 Confidence: 100.0% Identity: 29% PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone Phyre2 PDB 3bwu chain C domain 1 Region: 26 - 146 Aligned: 115 Modelled: 121 Confidence: 100.0% Identity: 58% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 2co7 chain B domain 1 Region: 21 - 145 Aligned: 117 Modelled: 125 Confidence: 100.0% Identity: 32% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 2j2z chain A domain 1 Region: 26 - 149 Aligned: 120 Modelled: 124 Confidence: 100.0% Identity: 34% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 1p5v chain A domain 1 Region: 21 - 145 Aligned: 111 Modelled: 125 Confidence: 100.0% Identity: 38% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 1l4i chain A domain 1 Region: 26 - 145 Aligned: 111 Modelled: 120 Confidence: 100.0% Identity: 54% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 3bwu chain C domain 2 Region: 148 - 230 Aligned: 83 Modelled: 83 Confidence: 99.8% Identity: 35% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1p5v chain A domain 2 Region: 146 - 229 Aligned: 79 Modelled: 84 Confidence: 99.8% Identity: 23% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 2co7 chain B domain 2 Region: 146 - 229 Aligned: 79 Modelled: 84 Confidence: 99.8% Identity: 23% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1l4i chain A domain 2 Region: 148 - 229 Aligned: 75 Modelled: 82 Confidence: 99.7% Identity: 33% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 2j2z chain A domain 2 Region: 150 - 224 Aligned: 73 Modelled: 75 Confidence: 99.6% Identity: 23% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1m1s chain A Region: 24 - 123 Aligned: 91 Modelled: 99 Confidence: 97.2% Identity: 14% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 1grw chain A Region: 24 - 142 Aligned: 113 Modelled: 119 Confidence: 96.5% Identity: 19% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 1row chain A Region: 27 - 123 Aligned: 88 Modelled: 97 Confidence: 96.5% Identity: 14% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 1 c1qunA_ 2 c1z9sA_ 3 c2co7B_ 4 c1l4iA_ 5 c1qpxA_ 6 c3f6iB_ 7 c3q48B_ 8 d3bwuc1 9 d2co7b1 10 d2j2za1 11 d1p5va1 12 d1l4ia1 13 d3bwuc2 14 d1p5va2 15 d2co7b2 16 d1l4ia2 17 d2j2za2 18 d1m1sa_ 19 d1grwa_ 20 d1rowa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1qunA_ 100.0 48 PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli 2 c1z9sA_ 100.0 32 PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex 3 c2co7B_ 100.0 29 PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) 4 c1l4iA_ 100.0 45 PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae 5 c1qpxA_ 100.0 29 PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers 6 c3f6iB_ 100.0 27 PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee 7 c3q48B_ 100.0 29 PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone 8 d3bwuc1 100.0 58 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 9 d2co7b1 100.0 32 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 10 d2j2za1 100.0 34 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 11 d1p5va1 100.0 38 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 12 d1l4ia1 100.0 54 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 13 d3bwuc2 99.8 35 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 14 d1p5va2 99.8 23 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 15 d2co7b2 99.8 23 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 16 d1l4ia2 99.7 33 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 17 d2j2za2 99.6 23 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 18 d1m1sa_ 97.2 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 19 d1grwa_ 96.5 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 20 d1rowa_ 96.5 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 21 c2qsvA_ not modelled 95.4 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83 22 d1mspa_ not modelled 95.2 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 23 c2e6jA_ not modelled 94.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydin protein; PDBTitle: solution structure of the c-terminal papd-like domain from2 human hydin protein 24 c1z9oB_ not modelled 93.2 15 PDB header:protein binding/lipid binding protein Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif 25 c3o0lB_ not modelled 92.9 7 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution 26 c3qisA_ not modelled 91.8 12 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: recognition of the f&h motif by the lowe syndrome protein ocrl 27 c3qbtH_ not modelled 90.5 12 PDB header:protein transport/hydrolase Chain: H: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: crystal structure of ocrl1 540-678 in complex with rab8a:gppnhp 28 c2ys4A_ not modelled 88.0 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydrocephalus-inducing protein homolog; PDBTitle: solution structure of the n-terminal papd-like domain of2 hydin protein from human 29 d2vzsa2 not modelled 82.1 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 30 d1wica_ not modelled 78.1 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 31 c3ginB_ not modelled 71.9 11 PDB header:metal binding protein Chain: B: PDB Molecule:sodium/calcium exchanger 1; PDBTitle: crystal structure of e454k-cbd1 32 d1ufga_ not modelled 71.8 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 33 d2dpka1 not modelled 69.4 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:CalX-like Family:CalX-beta domain 34 d4ubpb_ not modelled 68.0 22 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 35 d1ejxb_ not modelled 65.7 14 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 36 d1kyaa2 not modelled 63.5 6 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 37 d1aoza2 not modelled 63.0 26 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 38 d1e9ya1 not modelled 62.1 21 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 39 d1hfua2 not modelled 60.3 10 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 40 c2lllA_ not modelled 55.9 18 PDB header:structural protein Chain: A: PDB Molecule:lamin-b2; PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a 41 c3h6aB_ not modelled 54.1 8 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-4; PDBTitle: structure of the calx-beta domain of integrin beta42 crystallized in the presence of calcium 42 d1ifra_ not modelled 53.9 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 43 d2q9oa2 not modelled 53.3 23 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 44 c3jt0B_ not modelled 52.8 11 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of the c-terminal fragment (426-558)2 lamin-b1 from homo sapiens, northeast structural genomics3 consortium target hr5546a 45 c1e9zA_ not modelled 50.6 21 PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease 46 d1k3ra1 not modelled 50.4 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Hypothetical protein MTH1 (MT0001), insert domain 47 c2je8B_ not modelled 50.2 7 PDB header:hydrolase Chain: B: PDB Molecule:beta-mannosidase; PDBTitle: structure of a beta-mannosidase from bacteroides2 thetaiotaomicron 48 d1v10a2 not modelled 48.6 10 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 49 c2qvkA_ not modelled 47.4 10 PDB header:metal binding protein Chain: A: PDB Molecule:sodium/calcium exchanger 1; PDBTitle: the second ca2+-binding domain of the na+-ca2+ exchanger is2 essential for regulation: crystal structures and3 mutational analysis 50 c3qgaD_ not modelled 46.2 17 PDB header:hydrolase Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae 51 c3eujB_ not modelled 44.9 15 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, symmetric dimer 52 d1e42a1 not modelled 44.7 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Clathrin adaptor appendage domain Family:Alpha-adaptin ear subdomain-like 53 c3e9uA_ not modelled 40.5 12 PDB header:membrane protein Chain: A: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of calx cbd2 domain 54 c3rb7E_ not modelled 37.4 12 PDB header:metal binding protein Chain: E: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of cbd12 from calx1.2 55 c3ac0B_ not modelled 33.0 13 PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose 56 c1yycA_ not modelled 31.9 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative late embryogenesis abundant protein; PDBTitle: solution structure of a putative late embryogenesis2 abundant (lea) protein at2g46140.1 57 d1gyca2 not modelled 30.3 3 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 58 d1ivta_ not modelled 27.5 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 59 d1xo8a_ not modelled 23.7 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:LEA14-like Family:LEA14-like 60 c2vzvB_ not modelled 22.5 20 PDB header:hydrolase Chain: B: PDB Molecule:exo-beta-d-glucosaminidase; PDBTitle: substrate complex of amycolatopsis orientalis exo-2 chitosanase csxa e541a with chitosan 61 c3butA_ not modelled 21.3 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein af_0446; PDBTitle: crystal structure of protein af_0446 from archaeoglobus fulgidus 62 c1a65A_ not modelled 21.1 9 PDB header:oxidoreductase Chain: A: PDB Molecule:laccase; PDBTitle: type-2 cu-depleted laccase from coprinus cinereus 63 d1hmja_ not modelled 20.9 26 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 64 c2x41A_ not modelled 20.7 9 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose 65 c2l02B_ not modelled 19.4 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375 66 d1w8oa1 not modelled 16.3 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 67 d1r7aa1 not modelled 15.9 13 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 68 c3ppsD_ not modelled 15.7 21 PDB header:oxidoreductase Chain: D: PDB Molecule:laccase; PDBTitle: crystal structure of an ascomycete fungal laccase from thielavia2 arenaria 69 c1asqB_ not modelled 15.4 27 PDB header:oxidoreductase Chain: B: PDB Molecule:ascorbate oxidase; PDBTitle: x-ray structures and mechanistic implications of three functional2 derivatives of ascorbate oxidase from zucchini: reduced-, peroxide-,3 and azide-forms 70 c2q9oA_ not modelled 15.4 25 PDB header:oxidoreductase Chain: A: PDB Molecule:laccase-1; PDBTitle: near-atomic resolution structure of a melanocarpus albomyces laccase 71 d2fwua1 not modelled 14.6 8 Fold:Immunoglobulin-like beta-sandwich Superfamily:CalX-like Family:CalX-beta domain 72 c1v10A_ not modelled 14.6 9 PDB header:oxidase Chain: A: PDB Molecule:laccase; PDBTitle: structure of rigidoporus lignosus laccase from hemihedrally2 twinned crystals 73 c1wkwB_ not modelled 14.0 67 PDB header:translation/protein binding Chain: B: PDB Molecule:eukaryotic translation initiation factor 4e PDBTitle: crystal structure of the ternary complex of eif4e-m7gpppa-2 4ebp1 peptide 74 c1gycA_ not modelled 12.1 3 PDB header:oxidoreductase Chain: A: PDB Molecule:laccase 2; PDBTitle: crystal structure determination at room temperature of a2 laccase from trametes versicolor in its oxidised form3 containing a full complement of copper ions 75 c3of6D_ not modelled 12.0 12 PDB header:immune system Chain: D: PDB Molecule:pre t-cell antigen receptor alpha; PDBTitle: human pre-t cell receptor crystal structure 76 d1yq2a1 not modelled 11.6 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 77 c3e9tD_ not modelled 11.5 11 PDB header:membrane protein Chain: D: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of apo-form calx cbd1 domain 78 c2f7fA_ not modelled 11.5 16 PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase, putative; PDBTitle: crystal structure of enterococcus faecalis putative nicotinate2 phosphoribosyltransferase, new york structural genomics consortium 79 c1e42A_ not modelled 11.0 16 PDB header:endocytosis Chain: A: PDB Molecule:ap-2 complex subunit beta; PDBTitle: beta2-adaptin appendage domain, from clathrin adaptor ap2 80 d1eu3a1 not modelled 10.6 24 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 81 c3pe9D_ not modelled 10.3 16 PDB header:unknown function Chain: D: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 82 c2vqiA_ not modelled 9.9 19 PDB header:transport Chain: A: PDB Molecule:outer membrane usher protein papc; PDBTitle: structure of the p pilus usher (papc) translocation pore 83 d1jz8a2 not modelled 9.5 25 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 84 c3k6sB_ not modelled 9.4 11 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-2; PDBTitle: structure of integrin alphaxbeta2 ectodomain 85 c2pheC_ not modelled 9.2 33 PDB header:transcription Chain: C: PDB Molecule:alpha trans-inducing protein; PDBTitle: model for vp16 binding to pc4 86 c2phgB_ not modelled 9.1 33 PDB header:transcription Chain: B: PDB Molecule:alpha trans-inducing protein; PDBTitle: model for vp16 binding to tfiib 87 c2aenH_ not modelled 7.9 10 PDB header:viral protein Chain: H: PDB Molecule:outer capsid protein vp4, vp8* core; PDBTitle: crystal structure of the rotavirus strain ds-1 vp8* core 88 c2r2yA_ not modelled 7.6 20 PDB header:protein binding Chain: A: PDB Molecule:protein adrm1; PDBTitle: crystal structure of the proteasomal rpn13 pru-domain 89 c2z59A_ not modelled 7.6 20 PDB header:protein transport Chain: A: PDB Molecule:protein adrm1; PDBTitle: complex structures of mouse rpn13 (22-130aa) and ubiquitin 90 c2dv6F_ not modelled 7.2 10 PDB header:oxidoreductase Chain: F: PDB Molecule:nitrite reductase; PDBTitle: crystal structure of nitrite reductase from hyphomicrobium2 denitrificans 91 c2z4dA_ not modelled 6.7 17 PDB header:nuclear protein Chain: A: PDB Molecule:26s proteasome regulatory subunit rpn13; PDBTitle: nmr structures of yeast proteasome component rpn13 92 c3g7mA_ not modelled 6.2 18 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:xylanase inhibitor tl-xi; PDBTitle: structure of the thaumatin-like xylanase inhibitor tlxi 93 c2kr0A_ not modelled 6.1 20 PDB header:protein binding Chain: A: PDB Molecule:proteasomal ubiquitin receptor adrm1; PDBTitle: a proteasome protein 94 d1t4za_ not modelled 6.0 29 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:KaiB-like 95 c1u8cB_ not modelled 6.0 13 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: a novel adaptation of the integrin psi domain revealed from its2 crystal structure 96 d1lm8v_ not modelled 5.9 21 Fold:Prealbumin-like Superfamily:VHL Family:VHL 97 d1kqra_ not modelled 5.9 9 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:vp4 sialic acid binding domain 98 c1kriA_ not modelled 5.9 9 PDB header:viral protein Chain: A: PDB Molecule:vp4; PDBTitle: nmr solution structures of the rhesus rotavirus vp4 sialic2 acid binding domain without ligand 99 d2plta_ not modelled 5.7 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0