Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP76007
DateThu Jan 5 12:17:17 GMT 2012
Unique Job IDc64e74c953cdb402

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1zcdA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:na(+)/h(+) antiporter 1;
PDBTitle: crystal structure of the na+/h+ antiporter nhaa
Confidence and coverage
Confidence: 99.9% Coverage: 59%
341 residues ( 59% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
528 residues ( 91%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MDATTIISLFILGSILVTSSILLSSFSSRLGIPILVIFLAIGMLAGVDGVGGIPFDNYPF
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Disorder  ?????











































??

?





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   .........70.........80.........90.........100.........110.........120
Sequence  AYMVSNLALAIILLDGGMRTQASSFRVALGPALSLATLGVLITSGLTGMMAAWLFNLDLI
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   .........130.........140.........150.........160.........170.........180
Sequence  EGLLIGAIVGSTDAAAVFSLLGGKGLNERVGSTLEIESGSNDPMAVFLTITLIAMIQHHE
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????
??


























??

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   .........190.........200.........210.........220.........230.........240
Sequence  SNISWMFIVDILQQFGLGIVIGLGGGYLLLQMINRIALPAGLYPLLALSGGILIFSLTTA
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   .........250.........260.........270.........280.........290.........300
Sequence  LEGSGILAVYLCGFLLGNRPIRNRYGILQNFDGLAWLAQIAMFLVLGLLVNPSDLLPIAI
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??








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   .........310.........320.........330.........340.........350.........360
Sequence  PALILSAWMIFFARPLSVFAGLLPFRGFNLRERVFISWVGLRGAVPIILAVFPMMAGLEN
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??????























??????

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   .........370.........380.........390.........400.........410.........420
Sequence  ARLFFNVAFFVVLVSLLLQGTSLSWAAKKAKVVVPPVGRPVSRVGLDIHPENPWEQFVYQ
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????????





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   .........430.........440.........450.........460.........470.........480
Sequence  LSADKWCVGAALRDLHMPKETRIAALFRDNQLLHPTGSTRLREGDVLCVIGRERDLPALG
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??


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?

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   .........490.........500.........510.........520.........530.........540
Sequence  KLFSQSPPVALDQRFFGDFILEASAKYADVALIYGLEDGREYRDKQQTLGEIVQQLLGAA
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???????????





?
















???????












?
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   .........550.........560.........570........
Sequence  PVVGDQVEFAGMIWTVAEKEDNEVLKIGVRVAEEEAES
Secondary structure 















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Disorder  ?
?



























???????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1zcd chain A

3D model

Region: 12 - 377
Aligned: 341
Modelled: 348
Confidence: 99.9%
Identity: 14%
PDB header:membrane protein
Chain: A: PDB Molecule:na(+)/h(+) antiporter 1;
PDBTitle: crystal structure of the na+/h+ antiporter nhaa

Phyre2

PDB 3jxo chain B

3D model

Region: 411 - 483
Aligned: 73
Modelled: 73
Confidence: 99.3%
Identity: 30%
PDB header:transport protein
Chain: B: PDB Molecule:trka-n domain protein;
PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima

Phyre2

PDB 1vct chain A domain 2

3D model

Region: 407 - 486
Aligned: 80
Modelled: 80
Confidence: 98.8%
Identity: 21%
Fold: TrkA C-terminal domain-like
Superfamily: TrkA C-terminal domain-like
Family: TrkA C-terminal domain-like

Phyre2

PDB 2bkn chain A

3D model

Region: 361 - 484
Aligned: 119
Modelled: 124
Confidence: 98.8%
Identity: 18%
PDB header:membrane protein
Chain: A: PDB Molecule:hypothetical protein ph0236;
PDBTitle: structure analysis of unknown function protein

Phyre2

PDB 2fy8 chain A domain 2

3D model

Region: 409 - 484
Aligned: 76
Modelled: 76
Confidence: 98.8%
Identity: 18%
Fold: TrkA C-terminal domain-like
Superfamily: TrkA C-terminal domain-like
Family: TrkA C-terminal domain-like

Phyre2

PDB 2fy8 chain A

3D model

Region: 396 - 485
Aligned: 90
Modelled: 90
Confidence: 98.5%
Identity: 18%
PDB header:transport protein
Chain: A: PDB Molecule:calcium-gated potassium channel mthk;
PDBTitle: crystal structure of mthk rck domain in its ligand-free gating-ring2 form

Phyre2

PDB 1lnq chain C

3D model

Region: 396 - 485
Aligned: 90
Modelled: 90
Confidence: 98.5%
Identity: 18%
PDB header:metal transport
Chain: C: PDB Molecule:potassium channel related protein;
PDBTitle: crystal structure of mthk at 3.3 a

Phyre2

PDB 3l4b chain G

3D model

Region: 418 - 483
Aligned: 65
Modelled: 66
Confidence: 98.2%
Identity: 32%
PDB header:transport protein
Chain: G: PDB Molecule:trka k+ channel protien tm1088b;
PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima

Phyre2

PDB 3ded chain A domain 1

3D model

Region: 497 - 570
Aligned: 74
Modelled: 74
Confidence: 97.9%
Identity: 23%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2

PDB 2o1r chain A domain 1

3D model

Region: 493 - 570
Aligned: 75
Modelled: 78
Confidence: 97.8%
Identity: 24%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2

PDB 2pli chain A domain 1

3D model

Region: 497 - 570
Aligned: 71
Modelled: 71
Confidence: 97.8%
Identity: 25%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2

PDB 2p13 chain A domain 1

3D model

Region: 488 - 570
Aligned: 82
Modelled: 83
Confidence: 97.7%
Identity: 18%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2

PDB 3llb chain A

3D model

Region: 497 - 570
Aligned: 71
Modelled: 74
Confidence: 97.7%
Identity: 23%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of the protein pa3983 with unknown2 function from pseudomonas aeruginosa pao1

Phyre2

PDB 3ded chain B

3D model

Region: 497 - 570
Aligned: 72
Modelled: 74
Confidence: 97.6%
Identity: 25%
PDB header:membrane protein
Chain: B: PDB Molecule:probable hemolysin;
PDBTitle: c-terminal domain of probable hemolysin from chromobacterium violaceum

Phyre2

PDB 2o3g chain A domain 1

3D model

Region: 499 - 572
Aligned: 73
Modelled: 74
Confidence: 97.6%
Identity: 23%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2

PDB 2pls chain A domain 1

3D model

Region: 497 - 567
Aligned: 71
Modelled: 71
Confidence: 97.4%
Identity: 23%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2

PDB 2nqw chain A domain 1

3D model

Region: 497 - 573
Aligned: 77
Modelled: 77
Confidence: 97.4%
Identity: 21%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2

PDB 2oai chain A domain 1

3D model

Region: 497 - 571
Aligned: 68
Modelled: 75
Confidence: 97.3%
Identity: 18%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2

PDB 2rk5 chain A domain 1

3D model

Region: 497 - 571
Aligned: 72
Modelled: 75
Confidence: 97.2%
Identity: 15%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2

PDB 2r2z chain A domain 1

3D model

Region: 497 - 567
Aligned: 68
Modelled: 71
Confidence: 97.1%
Identity: 15%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2
1

c1zcdA_
2

c3jxoB_
3

d1vcta2
4

c2bknA_
5

d2fy8a2
6

c2fy8A_
7

c1lnqC_
8

c3l4bG_
9

d3deda1
10

d2o1ra1
11

d2plia1
12

d2p13a1
13

c3llbA_
14

c3dedB_
15

d2o3ga1
16

d2plsa1
17

d2nqwa1
18

d2oaia1
19

d2rk5a1
20

d2r2za1
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1zcdA_



99.9 14 PDB header:membrane protein
Chain: A: PDB Molecule:na(+)/h(+) antiporter 1;
PDBTitle: crystal structure of the na+/h+ antiporter nhaa
2c3jxoB_



99.3 30 PDB header:transport protein
Chain: B: PDB Molecule:trka-n domain protein;
PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima
3d1vcta2



98.8 21 Fold:TrkA C-terminal domain-like
Superfamily:TrkA C-terminal domain-like
Family:TrkA C-terminal domain-like
4c2bknA_



98.8 18 PDB header:membrane protein
Chain: A: PDB Molecule:hypothetical protein ph0236;
PDBTitle: structure analysis of unknown function protein
5d2fy8a2



98.8 18 Fold:TrkA C-terminal domain-like
Superfamily:TrkA C-terminal domain-like
Family:TrkA C-terminal domain-like
6c2fy8A_



98.5 18 PDB header:transport protein
Chain: A: PDB Molecule:calcium-gated potassium channel mthk;
PDBTitle: crystal structure of mthk rck domain in its ligand-free gating-ring2 form
7c1lnqC_



98.5 18 PDB header:metal transport
Chain: C: PDB Molecule:potassium channel related protein;
PDBTitle: crystal structure of mthk at 3.3 a
8c3l4bG_



98.2 32 PDB header:transport protein
Chain: G: PDB Molecule:trka k+ channel protien tm1088b;
PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima
9d3deda1



97.9 23 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
10d2o1ra1



97.8 24 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
11d2plia1



97.8 25 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
12d2p13a1



97.7 18 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
13c3llbA_



97.7 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of the protein pa3983 with unknown2 function from pseudomonas aeruginosa pao1
14c3dedB_



97.6 25 PDB header:membrane protein
Chain: B: PDB Molecule:probable hemolysin;
PDBTitle: c-terminal domain of probable hemolysin from chromobacterium violaceum
15d2o3ga1



97.6 23 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
16d2plsa1



97.4 23 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
17d2nqwa1



97.4 21 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
18d2oaia1



97.3 18 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
19d2rk5a1



97.2 15 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
20d2r2za1



97.1 15 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
21c3mt5A_



not modelled 96.8 11 PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:potassium large conductance calcium-activated channel,
PDBTitle: crystal structure of the human bk gating apparatus
22d2p3ha1



not modelled 96.0 18 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
23c3u6nC_



not modelled 95.4 10 PDB header:transport protein
Chain: C: PDB Molecule:high-conductance ca2+-activated k+ channel protein;
PDBTitle: open structure of the bk channel gating ring
24d2p4pa1



not modelled 93.8 9 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
25c3eywA_



not modelled 92.3 11 PDB header:transport protein
Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux
PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff
26c2l0eA_



not modelled 88.8 27 PDB header:membrane protein
Chain: A: PDB Molecule:sodium/hydrogen exchanger 1;
PDBTitle: structural and functional analysis of tm vi of the nhe1 isoform of the2 na+/h+ exchanger
27d1lssa_



not modelled 88.2 15 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Potassium channel NAD-binding domain
28c2g1uA_



not modelled 78.4 19 PDB header:transport protein
Chain: A: PDB Molecule:hypothetical protein tm1088a;
PDBTitle: crystal structure of a putative transport protein (tm1088a) from2 thermotoga maritima at 1.50 a resolution
29c3llvA_



not modelled 78.2 16 PDB header:nad(p) binding protein
Chain: A: PDB Molecule:exopolyphosphatase-related protein;
PDBTitle: the crystal structure of the nad(p)-binding domain of an2 exopolyphosphatase-related protein from archaeoglobus fulgidus to3 1.7a
30c3fwzA_



not modelled 74.4 10 PDB header:membrane protein
Chain: A: PDB Molecule:inner membrane protein ybal;
PDBTitle: crystal structure of trka-n domain of inner membrane protein ybal from2 escherichia coli
31d1id1a_



not modelled 65.7 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Potassium channel NAD-binding domain
32c2kbvA_



not modelled 53.0 35 PDB header:membrane protein
Chain: A: PDB Molecule:sodium/hydrogen exchanger 1;
PDBTitle: structural and functional analysis of tm xi of the nhe12 isoform of the na+/h+ exchanger
33c2khaA_



not modelled 48.2 12 PDB header:sugar binding protein
Chain: A: PDB Molecule:beta-1,3-glucan-binding protein;
PDBTitle: solution structure of a pathogen recognition domain from a2 lepidopteran insect, plodia interpunctella
34c3ie4A_



not modelled 47.2 16 PDB header:immune system
Chain: A: PDB Molecule:gram-negative binding protein 3;
PDBTitle: b-glucan binding domain of drosophila gnbp3 defines a novel2 family of pattern recognition receptor
35c2rqeA_



not modelled 44.9 12 PDB header:sugar binding protein
Chain: A: PDB Molecule:beta-1,3-glucan-binding protein;
PDBTitle: solution structure of the silkworm bgrp/gnbp3 n-terminal2 domain reveals the mechanism for b-1,3-glucan specific3 recognition
36d2fy8a1



not modelled 43.5 17 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Potassium channel NAD-binding domain
37d2c5aa1



not modelled 41.9 8 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
38d1tygb_



not modelled 38.4 14 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
39d1pjqa1



not modelled 36.2 12 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Siroheme synthase N-terminal domain-like
40c1tygG_



not modelled 35.6 15 PDB header:biosynthetic protein
Chain: G: PDB Molecule:yjbs;
PDBTitle: structure of the thiazole synthase/this complex
41c3nafA_



not modelled 35.6 12 PDB header:ion transport
Chain: A: PDB Molecule:calcium-activated potassium channel subunit alpha-1;
PDBTitle: structure of the intracellular gating ring from the human high-2 conductance ca2+ gated k+ channel (bk channel)
42d2hmva1



not modelled 35.1 9 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Potassium channel NAD-binding domain
43c3dqpA_



not modelled 29.4 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase ylbe;
PDBTitle: crystal structure of the oxidoreductase ylbe from2 lactococcus lactis, northeast structural genomics3 consortium target kr121.
44d1hdoa_



not modelled 29.1 11 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
45d1e5qa1



not modelled 28.5 4 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
46c2kl0A_



not modelled 25.5 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thiamin biosynthesis this;
PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325
47c3cwiA_



not modelled 21.1 15 PDB header:biosynthetic protein
Chain: A: PDB Molecule:thiamine-biosynthesis protein this;
PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137
48d1zud21



not modelled 19.5 21 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
49c3c85A_



not modelled 19.2 9 PDB header:transport protein
Chain: A: PDB Molecule:putative glutathione-regulated potassium-efflux system
PDBTitle: crystal structure of trka domain of putative glutathione-regulated2 potassium-efflux kefb from vibrio parahaemolyticus
50d1b0aa1



not modelled 18.8 9 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Aminoacid dehydrogenase-like, C-terminal domain
51d1x5qa1



not modelled 18.4 14 Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
52d1edza1



not modelled 17.1 14 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Aminoacid dehydrogenase-like, C-terminal domain
53d1g9oa_



not modelled 17.0 18 Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
54c3r6dA_



not modelled 16.9 8 PDB header:lyase, isomerase
Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase;
PDBTitle: crystal structure of nad-dependent epimerase/dehydratase from2 veillonella parvula dsm 2008 with cz-methylated lysine
55c3bpuA_



not modelled 16.1 19 PDB header:transferase
Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz domain-
PDBTitle: crystal structure of the 3rd pdz domain of human membrane associated2 guanylate kinase, c677s and c709s double mutant
56d1g7sa2



not modelled 15.6 14 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
57c3icpA_



not modelled 15.3 12 PDB header:isomerase
Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase;
PDBTitle: crystal structure of udp-galactose 4-epimerase
58c3l77A_



not modelled 15.3 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:short-chain alcohol dehydrogenase;
PDBTitle: x-ray structure alcohol dehydrogenase from archaeon thermococcus2 sibiricus complexed with 5-hydroxy-nadp
59c1edzA_



not modelled 15.0 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:5,10-methylenetetrahydrofolate dehydrogenase;
PDBTitle: structure of the nad-dependent 5,10-2 methylenetetrahydrofolate dehydrogenase from saccharomyces3 cerevisiae
60d2cu3a1



not modelled 14.5 26 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
61c3htrB_



not modelled 14.5 16 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized prc-barrel domain protein;
PDBTitle: crystal structure of prc-barrel domain protein from2 rhodopseudomonas palustris
62c3k8hA_



not modelled 14.2 14 PDB header:membrane protein
Chain: A: PDB Molecule:30klp;
PDBTitle: structure of crystal form i of tp0453
63c2vspA_



not modelled 14.1 15 PDB header:transport protein
Chain: A: PDB Molecule:pdz domain-containing protein 1;
PDBTitle: crystal structure of the fourth pdz domain of pdz domain-2 containing protein 1
64c3r3sD_



not modelled 13.2 8 PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase;
PDBTitle: structure of the ygha oxidoreductase from salmonella enterica
65c2pk3B_



not modelled 13.2 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:gdp-6-deoxy-d-lyxo-4-hexulose reductase;
PDBTitle: crystal structure of a gdp-4-keto-6-deoxy-d-mannose reductase
66c2x4gA_



not modelled 13.1 9 PDB header:isomerase
Chain: A: PDB Molecule:nucleoside-diphosphate-sugar epimerase;
PDBTitle: crystal structure of pa4631, a nucleoside-diphosphate-sugar2 epimerase from pseudomonas aeruginosa
67d1yjma1



not modelled 13.1 36 Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
68d1tp5a1



not modelled 13.1 16 Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
69c2q1wC_



not modelled 12.9 5 PDB header:sugar binding protein
Chain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase;
PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+
70d2piea1



not modelled 12.8 19 Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
71d2i0ia1



not modelled 12.5 18 Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
72c1yj5C_



not modelled 12.3 38 PDB header:transferase
Chain: C: PDB Molecule:5' polynucleotide kinase-3' phosphatase fha domain;
PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme
73d1a4ia1



not modelled 12.3 15 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Aminoacid dehydrogenase-like, C-terminal domain
74d1wvga1



not modelled 12.1 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
75c3dhnA_



not modelled 11.9 19 PDB header:isomerase, lyase
Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase;
PDBTitle: crystal structure of the putative epimerase q89z24_bactn2 from bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr310.
76d2f1ka2



not modelled 11.8 10 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
77c3ctmH_



not modelled 11.5 8 PDB header:oxidoreductase
Chain: H: PDB Molecule:carbonyl reductase;
PDBTitle: crystal structure of a carbonyl reductase from candida2 parapsilosis with anti-prelog stereo-specificity
78c3h2sA_



not modelled 11.2 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative nadh-flavin reductase;
PDBTitle: crystal structure of the q03b84 protein from lactobacillus2 casei. northeast structural genomics consortium target3 lcr19.
79c2p5uC_



not modelled 11.0 8 PDB header:isomerase
Chain: C: PDB Molecule:udp-glucose 4-epimerase;
PDBTitle: crystal structure of thermus thermophilus hb8 udp-glucose 4-2 epimerase complex with nad
80c2nwqA_



not modelled 11.0 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable short-chain dehydrogenase;
PDBTitle: short chain dehydrogenase from pseudomonas aeruginosa
81d1rkxa_



not modelled 10.9 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
82c3ew7A_



not modelled 10.8 9 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lmo0794 protein;
PDBTitle: crystal structure of the lmo0794 protein from listeria2 monocytogenes. northeast structural genomics consortium3 target lmr162.
83d1be9a_



not modelled 10.8 16 Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
84d1hi9a_



not modelled 10.6 13 Fold:Dipeptide transport protein
Superfamily:Dipeptide transport protein
Family:Dipeptide transport protein
85c2jxoA_



not modelled 10.5 18 PDB header:protein binding
Chain: A: PDB Molecule:ezrin-radixin-moesin-binding phosphoprotein 50;
PDBTitle: structure of the second pdz domain of nherf-1
86d2brfa1



not modelled 10.4 32 Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
87d1dg6a_



not modelled 10.3 25 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
88c1dg6A_



not modelled 10.3 25 PDB header:apoptosis
Chain: A: PDB Molecule:apo2l/tnf-related apopotis inducing ligand (trail);
PDBTitle: crystal structure of apo2l/trail
89c3edmD_



not modelled 10.3 8 PDB header:oxidoreductase
Chain: D: PDB Molecule:short chain dehydrogenase;
PDBTitle: crystal structure of a short chain dehydrogenase from agrobacterium2 tumefaciens
90d2q8oa1



not modelled 10.3 20 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
91c3kt9A_



not modelled 10.3 23 PDB header:hydrolase
Chain: A: PDB Molecule:aprataxin;
PDBTitle: aprataxin fha domain
92c2qq5A_



not modelled 10.2 5 PDB header:oxidoreductase
Chain: A: PDB Molecule:dehydrogenase/reductase sdr family member 1;
PDBTitle: crystal structure of human sdr family member 1
93d1xu9a_



not modelled 10.1 6 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
94d2q1ma1



not modelled 9.9 26 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
95d1lgpa_



not modelled 9.8 17 Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
96c2q30C_



not modelled 9.8 13 PDB header:unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution
97c3iusB_



not modelled 9.6 16 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the structure of a functionally unknown conserved protein2 from silicibacter pomeroyi dss
98c3oh8A_



not modelled 9.5 17 PDB header:isomerase
Chain: A: PDB Molecule:nucleoside-diphosphate sugar epimerase (sula family);
PDBTitle: crystal structure of the nucleoside-diphosphate sugar epimerase from2 corynebacterium glutamicum. northeast structural genomics consortium3 target cgr91
99d1ujxa_



not modelled 9.5 41 Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0