PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3edmD_

Fold library id	PDB Header	Molecule	Title
c3edmD_	PDB header: oxidoreductase	Chain: D: PDB Molecule: short chain dehydrogenase;	PDBTitle: crystal structure of a short chain dehydrogenase from2 agrobacterium tumefaciens

Links to external resources
Added to library: Tue Mar 16 14:19:57 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q R F T N R T I V V A G A G R D I G R A C A I R F A Q E G A N V V L T Y N G A E G A A T A V A E I E K L G R S A L A I K A D L T N A A E V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
S
S S T T
T T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A A I S A A A D K F G E I H G L V H V A G G L I A R K T I A E M D E A F W H Q V L D V N L T S L F L T A K T A L P K M A K G G A I V T F S S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T
T G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q A G R D G G G P G A L A Y A T S K G A V M T F T R G L A K E V G P K I R V N A V C P G S S E D V A G L V A F L A S D D A A Y V T G A C Y D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
T T T S
S G G G T T
S

. . .

Sequence I N G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	R	F	T	N	R	T	I	V	V	A	G	A	G	R	D	I	G	R	A	C	A	I	R	F	A	Q	E	G	A	N	V	V	L	T	Y	N	G	A	E	G	A	A	T	A	V	A	E	I	E	K	L	G	R	S	A	L	A	I	K	A	D	L	T	N	A	A	E	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	T	T							S		S	S													T	T																						T	T	T										T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	A	I	S	A	A	A	D	K	F	G	E	I	H	G	L	V	H	V	A	G	G	L	I	A	R	K	T	I	A	E	M	D	E	A	F	W	H	Q	V	L	D	V	N	L	T	S	L	F	L	T	A	K	T	A	L	P	K	M	A	K	G	G	A	I	V	T	F	S	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S																	T	T	T														T											G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	A	G	R	D	G	G	G	P	G	A	L	A	Y	A	T	S	K	G	A	V	M	T	F	T	R	G	L	A	K	E	V	G	P	K	I	R	V	N	A	V	C	P	G	S	S	E	D	V	A	G	L	V	A	F	L	A	S	D	D	A	A	Y	V	T	G	A	C	Y	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	T	T																							T	T	T	S																						S	G	G	G	T	T			S
	.	.	.
Sequence	I	N	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)