16/01/2012 07:25:49 : INFO  : Run start: Mon Jan 16 07:25:49 GMT 2012
16/01/2012 07:25:50 : INFO  : Initialised job
16/01/2012 07:25:50 : INFO  : Renaming log file 'phyre2_20120116_072549.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/c64e74c953cdb402/phyre_20120116_072549.log'
16/01/2012 07:25:50 : INFO  : Initialised job:
Sequence
>batch____
MDATTIISLFILGSILVTSSILLSSFSSRLGIPILVIFLAIGMLAGVDGVGGIPFDNYPF
AYMVSNLALAIILLDGGMRTQASSFRVALGPALSLATLGVLITSGLTGMMAAWLFNLDLI
EGLLIGAIVGSTDAAAVFSLLGGKGLNERVGSTLEIESGSNDPMAVFLTITLIAMIQHHE
SNISWMFIVDILQQFGLGIVIGLGGGYLLLQMINRIALPAGLYPLLALSGGILIFSLTTA
LEGSGILAVYLCGFLLGNRPIRNRYGILQNFDGLAWLAQIAMFLVLGLLVNPSDLLPIAI
PALILSAWMIFFARPLSVFAGLLPFRGFNLRERVFISWVGLRGAVPIILAVFPMMAGLEN
ARLFFNVAFFVVLVSLLLQGTSLSWAAKKAKVVVPPVGRPVSRVGLDIHPENPWEQFVYQ
LSADKWCVGAALRDLHMPKETRIAALFRDNQLLHPTGSTRLREGDVLCVIGRERDLPALG
KLFSQSPPVALDQRFFGDFILEASAKYADVALIYGLEDGREYRDKQQTLGEIVQQLLGAA
PVVGDQVEFAGMIWTVAEKEDNEVLKIGVRVAEEEAES

16/01/2012 07:25:50 : INFO  : Checked sequence
16/01/2012 07:25:50 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 07:25:50 : INFO  : PSI-BLAST 3 iterations
16/01/2012 07:30:24 : INFO  : PSI-BLAST 5 iterations
16/01/2012 07:35:19 : INFO  : Finished PSI-BLAST
16/01/2012 07:35:19 : INFO  : Running Buildali to generate a3m file
16/01/2012 08:00:20 : INFO  : Converting to HMM
16/01/2012 08:00:35 : INFO  : Calibrating HMM
16/01/2012 08:00:49 : INFO  : Searching HMM database
16/01/2012 08:12:04 : INFO  : Finished buildali
16/01/2012 08:12:04 : INFO  : Predicting secondary structure
16/01/2012 08:12:04 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 08:12:04 : INFO  : Predicting Disordered regions
16/01/2012 08:12:04 : INFO  : Predicted Disorder (Disopred)
16/01/2012 08:12:04 : INFO  : Running memsat_svm check
16/01/2012 08:14:24 : INFO  : Running memsat_svm full
16/01/2012 08:20:32 : INFO  : Predicted Transmembrane (memsat_svm) ID 'c64e74c953cdb402'
16/01/2012 08:20:32 : INFO  : Initialising fold library search
16/01/2012 08:20:32 : INFO  : Initialised search input
16/01/2012 08:20:32 : INFO  : Building Ensemble models
16/01/2012 08:20:33 : INFO  : Building hh.c1zcdA_.model.1.pdb
16/01/2012 08:20:33 : INFO  : Building hh.c3jxoB_.model.2.pdb
16/01/2012 08:20:33 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c64e74c953cdb402/hh.c3jxoB_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c64e74c953cdb402/c3jxoB_.2.pdb
16/01/2012 08:20:34 : INFO  : Building hh.d1vcta2.model.3.pdb
16/01/2012 08:20:34 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c64e74c953cdb402/hh.d1vcta2.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c64e74c953cdb402/d1vcta2.3.pdb
16/01/2012 08:20:34 : INFO  : Building hh.c2bknA_.model.4.pdb
16/01/2012 08:20:34 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c64e74c953cdb402/hh.c2bknA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c64e74c953cdb402/c2bknA_.4.pdb
16/01/2012 08:20:35 : INFO  : Building hh.d3deda1.model.5.pdb
16/01/2012 08:20:35 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c64e74c953cdb402/hh.d3deda1.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c64e74c953cdb402/d3deda1.9.pdb
16/01/2012 08:20:35 : INFO  : Building hh.d2o1ra1.model.6.pdb
16/01/2012 08:20:35 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c64e74c953cdb402/hh.d2o1ra1.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c64e74c953cdb402/d2o1ra1.10.pdb
16/01/2012 08:20:36 : INFO  : Building hh.d2plia1.model.7.pdb
16/01/2012 08:20:36 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c64e74c953cdb402/hh.d2plia1.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c64e74c953cdb402/d2plia1.11.pdb
16/01/2012 08:20:36 : INFO  : Building hh.d2p13a1.model.8.pdb
16/01/2012 08:20:36 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c64e74c953cdb402/hh.d2p13a1.model.8.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c64e74c953cdb402/d2p13a1.12.pdb
16/01/2012 08:20:36 : INFO  : Building hh.c3llbA_.model.9.pdb
16/01/2012 08:20:37 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c64e74c953cdb402/hh.c3llbA_.model.9.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c64e74c953cdb402/c3llbA_.13.pdb
16/01/2012 08:20:37 : INFO  : Building hh.c3dedB_.model.10.pdb
16/01/2012 08:20:37 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c64e74c953cdb402/hh.c3dedB_.model.10.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c64e74c953cdb402/c3dedB_.14.pdb
16/01/2012 08:20:37 : INFO  : Building c1zcdA_.1.pdb
16/01/2012 08:20:37 : INFO  : Building c3jxoB_.2.pdb
16/01/2012 08:20:38 : INFO  : Building d1vcta2.3.pdb
16/01/2012 08:20:38 : INFO  : Building c2bknA_.4.pdb
16/01/2012 08:20:38 : INFO  : Building d2fy8a2.5.pdb
16/01/2012 08:20:39 : INFO  : Building c2fy8A_.6.pdb
16/01/2012 08:20:39 : INFO  : Building c1lnqC_.7.pdb
16/01/2012 08:20:40 : INFO  : Building c3l4bG_.8.pdb
16/01/2012 08:20:40 : INFO  : Building d3deda1.9.pdb
16/01/2012 08:20:40 : INFO  : Building d2o1ra1.10.pdb
16/01/2012 08:20:41 : INFO  : Building d2plia1.11.pdb
16/01/2012 08:20:41 : INFO  : Building d2p13a1.12.pdb
16/01/2012 08:20:41 : INFO  : Building c3llbA_.13.pdb
16/01/2012 08:20:41 : INFO  : Building c3dedB_.14.pdb
16/01/2012 08:20:42 : INFO  : Building d2o3ga1.15.pdb
16/01/2012 08:20:42 : INFO  : Building d2plsa1.16.pdb
16/01/2012 08:20:42 : INFO  : Building d2nqwa1.17.pdb
16/01/2012 08:20:43 : INFO  : Building d2oaia1.18.pdb
16/01/2012 08:20:43 : INFO  : Building d2rk5a1.19.pdb
16/01/2012 08:20:43 : INFO  : Building d2r2za1.20.pdb
16/01/2012 08:20:50 : INFO  : Finished HH model building
16/01/2012 08:20:50 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 08:20:54 : INFO  : html domain output complete ID 'c64e74c953cdb402'
16/01/2012 08:42:29 : INFO  : Run end  : Mon Jan 16 08:42:29 GMT 2012
