Phyre 2 Results for P76007

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P76007
Date | Thu Jan 5 12:17:17 GMT 2012
Unique Job ID | c64e74c953cdb402

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c1zcdA_
Top template information
PDB header:membrane protein Chain: A: PDB Molecule:na(+)/h(+) antiporter 1; PDBTitle: crystal structure of the na+/h+ antiporter nhaa
Confidence and coverage
Confidence: | 99.9% | Coverage: | 59%
341 residues ( 59% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
528 residues ( 91%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | D | A | T | T | I | I | S | L | F | I | L | G | S | I | L | V | T | S | S | I | L | L | S | S | F | S | S | R | L | G | I | P | I | L | V | I | F | L | A | I | G | M | L | A | G | V | D | G | V | G | G | I | P | F | D | N | Y | P | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  | ? |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | A | Y | M | V | S | N | L | A | L | A | I | I | L | L | D | G | G | M | R | T | Q | A | S | S | F | R | V | A | L | G | P | A | L | S | L | A | T | L | G | V | L | I | T | S | G | L | T | G | M | M | A | A | W | L | F | N | L | D | L | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | E | G | L | L | I | G | A | I | V | G | S | T | D | A | A | A | V | F | S | L | L | G | G | K | G | L | N | E | R | V | G | S | T | L | E | I | E | S | G | S | N | D | P | M | A | V | F | L | T | I | T | L | I | A | M | I | Q | H | H | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | S | N | I | S | W | M | F | I | V | D | I | L | Q | Q | F | G | L | G | I | V | I | G | L | G | G | G | Y | L | L | L | Q | M | I | N | R | I | A | L | P | A | G | L | Y | P | L | L | A | L | S | G | G | I | L | I | F | S | L | T | T | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | L | E | G | S | G | I | L | A | V | Y | L | C | G | F | L | L | G | N | R | P | I | R | N | R | Y | G | I | L | Q | N | F | D | G | L | A | W | L | A | Q | I | A | M | F | L | V | L | G | L | L | V | N | P | S | D | L | L | P | I | A | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | P | A | L | I | L | S | A | W | M | I | F | F | A | R | P | L | S | V | F | A | G | L | L | P | F | R | G | F | N | L | R | E | R | V | F | I | S | W | V | G | L | R | G | A | V | P | I | I | L | A | V | F | P | M | M | A | G | L | E | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | A | R | L | F | F | N | V | A | F | F | V | V | L | V | S | L | L | L | Q | G | T | S | L | S | W | A | A | K | K | A | K | V | V | V | P | P | V | G | R | P | V | S | R | V | G | L | D | I | H | P | E | N | P | W | E | Q | F | V | Y | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480
Sequence |  | L | S | A | D | K | W | C | V | G | A | A | L | R | D | L | H | M | P | K | E | T | R | I | A | A | L | F | R | D | N | Q | L | L | H | P | T | G | S | T | R | L | R | E | G | D | V | L | C | V | I | G | R | E | R | D | L | P | A | L | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  | ? | ? |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540
Sequence |  | K | L | F | S | Q | S | P | P | V | A | L | D | Q | R | F | F | G | D | F | I | L | E | A | S | A | K | Y | A | D | V | A | L | I | Y | G | L | E | D | G | R | E | Y | R | D | K | Q | Q | T | L | G | E | I | V | Q | Q | L | L | G | A | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | .
Sequence |  | P | V | V | G | D | Q | V | E | F | A | G | M | I | W | T | V | A | E | K | E | D | N | E | V | L | K | I | G | V | R | V | A | E | E | E | A | E | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c1zcdA_ |

### PDB 1zcd chain A

Region: 12 - 377
Aligned: 341
Modelled: 348
Confidence: 99.9%
Identity: 14%
PDB header:membrane protein
Chain: A: PDB Molecule:na(+)/h(+) antiporter 1;
PDBTitle: crystal structure of the na+/h+ antiporter nhaa

Phyre2
2 |
| c3jxoB_ |

### PDB 3jxo chain B

Region: 411 - 483
Aligned: 73
Modelled: 73
Confidence: 99.3%
Identity: 30%
PDB header:transport protein
Chain: B: PDB Molecule:trka-n domain protein;
PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima

Phyre2
3 |
| d1vcta2 |

### PDB 1vct chain A domain 2

Region: 407 - 486
Aligned: 80
Modelled: 80
Confidence: 98.8%
Identity: 21%
Fold: TrkA C-terminal domain-like
Superfamily: TrkA C-terminal domain-like
Family: TrkA C-terminal domain-like

Phyre2
4 |
| c2bknA_ |

### PDB 2bkn chain A

Region: 361 - 484
Aligned: 119
Modelled: 124
Confidence: 98.8%
Identity: 18%
PDB header:membrane protein
Chain: A: PDB Molecule:hypothetical protein ph0236;
PDBTitle: structure analysis of unknown function protein

Phyre2
5 |
| d2fy8a2 |

### PDB 2fy8 chain A domain 2

Region: 409 - 484
Aligned: 76
Modelled: 76
Confidence: 98.8%
Identity: 18%
Fold: TrkA C-terminal domain-like
Superfamily: TrkA C-terminal domain-like
Family: TrkA C-terminal domain-like

Phyre2
6 |
| c2fy8A_ |

### PDB 2fy8 chain A

Region: 396 - 485
Aligned: 90
Modelled: 90
Confidence: 98.5%
Identity: 18%
PDB header:transport protein
Chain: A: PDB Molecule:calcium-gated potassium channel mthk;
PDBTitle: crystal structure of mthk rck domain in its ligand-free gating-ring2 form

Phyre2
7 |
| c1lnqC_ |

### PDB 1lnq chain C

Region: 396 - 485
Aligned: 90
Modelled: 90
Confidence: 98.5%
Identity: 18%
PDB header:metal transport
Chain: C: PDB Molecule:potassium channel related protein;
PDBTitle: crystal structure of mthk at 3.3 a

Phyre2
8 |
| c3l4bG_ |

### PDB 3l4b chain G

Region: 418 - 483
Aligned: 65
Modelled: 66
Confidence: 98.2%
Identity: 32%
PDB header:transport protein
Chain: G: PDB Molecule:trka k+ channel protien tm1088b;
PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima

Phyre2
9 |
| d3deda1 |

### PDB 3ded chain A domain 1

Region: 497 - 570
Aligned: 74
Modelled: 74
Confidence: 97.9%
Identity: 23%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2
10 |
| d2o1ra1 |

### PDB 2o1r chain A domain 1

Region: 493 - 570
Aligned: 75
Modelled: 78
Confidence: 97.8%
Identity: 24%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2
11 |
| d2plia1 |

### PDB 2pli chain A domain 1

Region: 497 - 570
Aligned: 71
Modelled: 71
Confidence: 97.8%
Identity: 25%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2
12 |
| d2p13a1 |

### PDB 2p13 chain A domain 1

Region: 488 - 570
Aligned: 82
Modelled: 83
Confidence: 97.7%
Identity: 18%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2
13 |
| c3llbA_ |

### PDB 3llb chain A

Region: 497 - 570
Aligned: 71
Modelled: 74
Confidence: 97.7%
Identity: 23%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of the protein pa3983 with unknown2 function from pseudomonas aeruginosa pao1

Phyre2
14 |
| c3dedB_ |

### PDB 3ded chain B

Region: 497 - 570
Aligned: 72
Modelled: 74
Confidence: 97.6%
Identity: 25%
PDB header:membrane protein
Chain: B: PDB Molecule:probable hemolysin;
PDBTitle: c-terminal domain of probable hemolysin from chromobacterium violaceum

Phyre2
15 |
| d2o3ga1 |

### PDB 2o3g chain A domain 1

Region: 499 - 572
Aligned: 73
Modelled: 74
Confidence: 97.6%
Identity: 23%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2
16 |
| d2plsa1 |

### PDB 2pls chain A domain 1

Region: 497 - 567
Aligned: 71
Modelled: 71
Confidence: 97.4%
Identity: 23%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2
17 |
| d2nqwa1 |

### PDB 2nqw chain A domain 1

Region: 497 - 573
Aligned: 77
Modelled: 77
Confidence: 97.4%
Identity: 21%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2
18 |
| d2oaia1 |

### PDB 2oai chain A domain 1

Region: 497 - 571
Aligned: 68
Modelled: 75
Confidence: 97.3%
Identity: 18%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2
19 |
| d2rk5a1 |

### PDB 2rk5 chain A domain 1

Region: 497 - 571
Aligned: 72
Modelled: 75
Confidence: 97.2%
Identity: 15%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2
20 |
| d2r2za1 |

### PDB 2r2z chain A domain 1

Region: 497 - 567
Aligned: 68
Modelled: 71
Confidence: 97.1%
Identity: 15%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |
57 |
58 |
59 |
60 |
61 |
62 |
63 |
64 |
65 |
66 |
67 |
68 |
69 |
70 |
71 |
72 |
73 |
74 |
75 |
76 |
77 |
78 |
79 |
80 |
81 |
82 |
83 |
84 |
85 |
86 |
87 |
88 |
89 |
90 |
91 |
92 |
93 |
94 |
95 |
96 |
97 |
98 |
99 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1zcdA_ |
|  | 99.9 | 14 | PDB header:membrane protein Chain: A: PDB Molecule:na(+)/h(+) antiporter 1; PDBTitle: crystal structure of the na+/h+ antiporter nhaa
2 | c3jxoB_ |
|  | 99.3 | 30 | PDB header:transport protein Chain: B: PDB Molecule:trka-n domain protein; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima
3 | d1vcta2 |
|  | 98.8 | 21 | Fold:TrkA C-terminal domain-like Superfamily:TrkA C-terminal domain-like Family:TrkA C-terminal domain-like
4 | c2bknA_ |
|  | 98.8 | 18 | PDB header:membrane protein Chain: A: PDB Molecule:hypothetical protein ph0236; PDBTitle: structure analysis of unknown function protein
5 | d2fy8a2 |
|  | 98.8 | 18 | Fold:TrkA C-terminal domain-like Superfamily:TrkA C-terminal domain-like Family:TrkA C-terminal domain-like
6 | c2fy8A_ |
|  | 98.5 | 18 | PDB header:transport protein Chain: A: PDB Molecule:calcium-gated potassium channel mthk; PDBTitle: crystal structure of mthk rck domain in its ligand-free gating-ring2 form
7 | c1lnqC_ |
|  | 98.5 | 18 | PDB header:metal transport Chain: C: PDB Molecule:potassium channel related protein; PDBTitle: crystal structure of mthk at 3.3 a
8 | c3l4bG_ |
|  | 98.2 | 32 | PDB header:transport protein Chain: G: PDB Molecule:trka k+ channel protien tm1088b; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima
9 | d3deda1 |
|  | 97.9 | 23 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
10 | d2o1ra1 |
|  | 97.8 | 24 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
11 | d2plia1 |
|  | 97.8 | 25 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
12 | d2p13a1 |
|  | 97.7 | 18 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
13 | c3llbA_ |
|  | 97.7 | 23 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the protein pa3983 with unknown2 function from pseudomonas aeruginosa pao1
14 | c3dedB_ |
|  | 97.6 | 25 | PDB header:membrane protein Chain: B: PDB Molecule:probable hemolysin; PDBTitle: c-terminal domain of probable hemolysin from chromobacterium violaceum
15 | d2o3ga1 |
|  | 97.6 | 23 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
16 | d2plsa1 |
|  | 97.4 | 23 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
17 | d2nqwa1 |
|  | 97.4 | 21 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
18 | d2oaia1 |
|  | 97.3 | 18 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
19 | d2rk5a1 |
|  | 97.2 | 15 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
20 | d2r2za1 |
|  | 97.1 | 15 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
21 | c3mt5A_ |
| not modelled | 96.8 | 11 | PDB header:membrane protein, transport protein Chain: A: PDB Molecule:potassium large conductance calcium-activated channel, PDBTitle: crystal structure of the human bk gating apparatus
22 | d2p3ha1 |
| not modelled | 96.0 | 18 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
23 | c3u6nC_ |
| not modelled | 95.4 | 10 | PDB header:transport protein Chain: C: PDB Molecule:high-conductance ca2+-activated k+ channel protein; PDBTitle: open structure of the bk channel gating ring
24 | d2p4pa1 |
| not modelled | 93.8 | 9 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
25 | c3eywA_ |
| not modelled | 92.3 | 11 | PDB header:transport protein Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff
26 | c2l0eA_ |
| not modelled | 88.8 | 27 | PDB header:membrane protein Chain: A: PDB Molecule:sodium/hydrogen exchanger 1; PDBTitle: structural and functional analysis of tm vi of the nhe1 isoform of the2 na+/h+ exchanger
27 | d1lssa_ |
| not modelled | 88.2 | 15 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Potassium channel NAD-binding domain
28 | c2g1uA_ |
| not modelled | 78.4 | 19 | PDB header:transport protein Chain: A: PDB Molecule:hypothetical protein tm1088a; PDBTitle: crystal structure of a putative transport protein (tm1088a) from2 thermotoga maritima at 1.50 a resolution
29 | c3llvA_ |
| not modelled | 78.2 | 16 | PDB header:nad(p) binding protein Chain: A: PDB Molecule:exopolyphosphatase-related protein; PDBTitle: the crystal structure of the nad(p)-binding domain of an2 exopolyphosphatase-related protein from archaeoglobus fulgidus to3 1.7a
30 | c3fwzA_ |
| not modelled | 74.4 | 10 | PDB header:membrane protein Chain: A: PDB Molecule:inner membrane protein ybal; PDBTitle: crystal structure of trka-n domain of inner membrane protein ybal from2 escherichia coli
31 | d1id1a_ |
| not modelled | 65.7 | 13 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Potassium channel NAD-binding domain
32 | c2kbvA_ |
| not modelled | 53.0 | 35 | PDB header:membrane protein Chain: A: PDB Molecule:sodium/hydrogen exchanger 1; PDBTitle: structural and functional analysis of tm xi of the nhe12 isoform of the na+/h+ exchanger
33 | c2khaA_ |
| not modelled | 48.2 | 12 | PDB header:sugar binding protein Chain: A: PDB Molecule:beta-1,3-glucan-binding protein; PDBTitle: solution structure of a pathogen recognition domain from a2 lepidopteran insect, plodia interpunctella
34 | c3ie4A_ |
| not modelled | 47.2 | 16 | PDB header:immune system Chain: A: PDB Molecule:gram-negative binding protein 3; PDBTitle: b-glucan binding domain of drosophila gnbp3 defines a novel2 family of pattern recognition receptor
35 | c2rqeA_ |
| not modelled | 44.9 | 12 | PDB header:sugar binding protein Chain: A: PDB Molecule:beta-1,3-glucan-binding protein; PDBTitle: solution structure of the silkworm bgrp/gnbp3 n-terminal2 domain reveals the mechanism for b-1,3-glucan specific3 recognition
36 | d2fy8a1 |
| not modelled | 43.5 | 17 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Potassium channel NAD-binding domain
37 | d2c5aa1 |
| not modelled | 41.9 | 8 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
38 | d1tygb_ |
| not modelled | 38.4 | 14 | Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS
39 | d1pjqa1 |
| not modelled | 36.2 | 12 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Siroheme synthase N-terminal domain-like
40 | c1tygG_ |
| not modelled | 35.6 | 15 | PDB header:biosynthetic protein Chain: G: PDB Molecule:yjbs; PDBTitle: structure of the thiazole synthase/this complex
41 | c3nafA_ |
| not modelled | 35.6 | 12 | PDB header:ion transport Chain: A: PDB Molecule:calcium-activated potassium channel subunit alpha-1; PDBTitle: structure of the intracellular gating ring from the human high-2 conductance ca2+ gated k+ channel (bk channel)
42 | d2hmva1 |
| not modelled | 35.1 | 9 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Potassium channel NAD-binding domain
43 | c3dqpA_ |
| not modelled | 29.4 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase ylbe; PDBTitle: crystal structure of the oxidoreductase ylbe from2 lactococcus lactis, northeast structural genomics3 consortium target kr121.
44 | d1hdoa_ |
| not modelled | 29.1 | 11 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
45 | d1e5qa1 |
| not modelled | 28.5 | 4 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
46 | c2kl0A_ |
| not modelled | 25.5 | 14 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thiamin biosynthesis this; PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325
47 | c3cwiA_ |
| not modelled | 21.1 | 15 | PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137
48 | d1zud21 |
| not modelled | 19.5 | 21 | Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS
49 | c3c85A_ |
| not modelled | 19.2 | 9 | PDB header:transport protein Chain: A: PDB Molecule:putative glutathione-regulated potassium-efflux system PDBTitle: crystal structure of trka domain of putative glutathione-regulated2 potassium-efflux kefb from vibrio parahaemolyticus
50 | d1b0aa1 |
| not modelled | 18.8 | 9 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
51 | d1x5qa1 |
| not modelled | 18.4 | 14 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
52 | d1edza1 |
| not modelled | 17.1 | 14 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
53 | d1g9oa_ |
| not modelled | 17.0 | 18 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
54 | c3r6dA_ |
| not modelled | 16.9 | 8 | PDB header:lyase, isomerase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of nad-dependent epimerase/dehydratase from2 veillonella parvula dsm 2008 with cz-methylated lysine
55 | c3bpuA_ |
| not modelled | 16.1 | 19 | PDB header:transferase Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz domain- PDBTitle: crystal structure of the 3rd pdz domain of human membrane associated2 guanylate kinase, c677s and c709s double mutant
56 | d1g7sa2 |
| not modelled | 15.6 | 14 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors
57 | c3icpA_ |
| not modelled | 15.3 | 12 | PDB header:isomerase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of udp-galactose 4-epimerase
58 | c3l77A_ |
| not modelled | 15.3 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:short-chain alcohol dehydrogenase; PDBTitle: x-ray structure alcohol dehydrogenase from archaeon thermococcus2 sibiricus complexed with 5-hydroxy-nadp
59 | c1edzA_ |
| not modelled | 15.0 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:5,10-methylenetetrahydrofolate dehydrogenase; PDBTitle: structure of the nad-dependent 5,10-2 methylenetetrahydrofolate dehydrogenase from saccharomyces3 cerevisiae
60 | d2cu3a1 |
| not modelled | 14.5 | 26 | Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS
61 | c3htrB_ |
| not modelled | 14.5 | 16 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized prc-barrel domain protein; PDBTitle: crystal structure of prc-barrel domain protein from2 rhodopseudomonas palustris
62 | c3k8hA_ |
| not modelled | 14.2 | 14 | PDB header:membrane protein Chain: A: PDB Molecule:30klp; PDBTitle: structure of crystal form i of tp0453
63 | c2vspA_ |
| not modelled | 14.1 | 15 | PDB header:transport protein Chain: A: PDB Molecule:pdz domain-containing protein 1; PDBTitle: crystal structure of the fourth pdz domain of pdz domain-2 containing protein 1
64 | c3r3sD_ |
| not modelled | 13.2 | 8 | PDB header:oxidoreductase Chain: D: PDB Molecule:oxidoreductase; PDBTitle: structure of the ygha oxidoreductase from salmonella enterica
65 | c2pk3B_ |
| not modelled | 13.2 | 13 | PDB header:oxidoreductase Chain: B: PDB Molecule:gdp-6-deoxy-d-lyxo-4-hexulose reductase; PDBTitle: crystal structure of a gdp-4-keto-6-deoxy-d-mannose reductase
66 | c2x4gA_ |
| not modelled | 13.1 | 9 | PDB header:isomerase Chain: A: PDB Molecule:nucleoside-diphosphate-sugar epimerase; PDBTitle: crystal structure of pa4631, a nucleoside-diphosphate-sugar2 epimerase from pseudomonas aeruginosa
67 | d1yjma1 |
| not modelled | 13.1 | 36 | Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain
68 | d1tp5a1 |
| not modelled | 13.1 | 16 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
69 | c2q1wC_ |
| not modelled | 12.9 | 5 | PDB header:sugar binding protein Chain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+
70 | d2piea1 |
| not modelled | 12.8 | 19 | Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain
71 | d2i0ia1 |
| not modelled | 12.5 | 18 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
72 | c1yj5C_ |
| not modelled | 12.3 | 38 | PDB header:transferase Chain: C: PDB Molecule:5' polynucleotide kinase-3' phosphatase fha domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme
73 | d1a4ia1 |
| not modelled | 12.3 | 15 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
74 | d1wvga1 |
| not modelled | 12.1 | 13 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
75 | c3dhnA_ |
| not modelled | 11.9 | 19 | PDB header:isomerase, lyase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of the putative epimerase q89z24_bactn2 from bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr310.
76 | d2f1ka2 |
| not modelled | 11.8 | 10 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
77 | c3ctmH_ |
| not modelled | 11.5 | 8 | PDB header:oxidoreductase Chain: H: PDB Molecule:carbonyl reductase; PDBTitle: crystal structure of a carbonyl reductase from candida2 parapsilosis with anti-prelog stereo-specificity
78 | c3h2sA_ |
| not modelled | 11.2 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative nadh-flavin reductase; PDBTitle: crystal structure of the q03b84 protein from lactobacillus2 casei. northeast structural genomics consortium target3 lcr19.
79 | c2p5uC_ |
| not modelled | 11.0 | 8 | PDB header:isomerase Chain: C: PDB Molecule:udp-glucose 4-epimerase; PDBTitle: crystal structure of thermus thermophilus hb8 udp-glucose 4-2 epimerase complex with nad
80 | c2nwqA_ |
| not modelled | 11.0 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:probable short-chain dehydrogenase; PDBTitle: short chain dehydrogenase from pseudomonas aeruginosa
81 | d1rkxa_ |
| not modelled | 10.9 | 13 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
82 | c3ew7A_ |
| not modelled | 10.8 | 9 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo0794 protein; PDBTitle: crystal structure of the lmo0794 protein from listeria2 monocytogenes. northeast structural genomics consortium3 target lmr162.
83 | d1be9a_ |
| not modelled | 10.8 | 16 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
84 | d1hi9a_ |
| not modelled | 10.6 | 13 | Fold:Dipeptide transport protein Superfamily:Dipeptide transport protein Family:Dipeptide transport protein
85 | c2jxoA_ |
| not modelled | 10.5 | 18 | PDB header:protein binding Chain: A: PDB Molecule:ezrin-radixin-moesin-binding phosphoprotein 50; PDBTitle: structure of the second pdz domain of nherf-1
86 | d2brfa1 |
| not modelled | 10.4 | 32 | Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain
87 | d1dg6a_ |
| not modelled | 10.3 | 25 | Fold:TNF-like Superfamily:TNF-like Family:TNF-like
88 | c1dg6A_ |
| not modelled | 10.3 | 25 | PDB header:apoptosis Chain: A: PDB Molecule:apo2l/tnf-related apopotis inducing ligand (trail); PDBTitle: crystal structure of apo2l/trail
89 | c3edmD_ |
| not modelled | 10.3 | 8 | PDB header:oxidoreductase Chain: D: PDB Molecule:short chain dehydrogenase; PDBTitle: crystal structure of a short chain dehydrogenase from agrobacterium2 tumefaciens
90 | d2q8oa1 |
| not modelled | 10.3 | 20 | Fold:TNF-like Superfamily:TNF-like Family:TNF-like
91 | c3kt9A_ |
| not modelled | 10.3 | 23 | PDB header:hydrolase Chain: A: PDB Molecule:aprataxin; PDBTitle: aprataxin fha domain
92 | c2qq5A_ |
| not modelled | 10.2 | 5 | PDB header:oxidoreductase Chain: A: PDB Molecule:dehydrogenase/reductase sdr family member 1; PDBTitle: crystal structure of human sdr family member 1
93 | d1xu9a_ |
| not modelled | 10.1 | 6 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
94 | d2q1ma1 |
| not modelled | 9.9 | 26 | Fold:TNF-like Superfamily:TNF-like Family:TNF-like
95 | d1lgpa_ |
| not modelled | 9.8 | 17 | Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain
96 | c2q30C_ |
| not modelled | 9.8 | 13 | PDB header:unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution
97 | c3iusB_ |
| not modelled | 9.6 | 16 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the structure of a functionally unknown conserved protein2 from silicibacter pomeroyi dss
98 | c3oh8A_ |
| not modelled | 9.5 | 17 | PDB header:isomerase Chain: A: PDB Molecule:nucleoside-diphosphate sugar epimerase (sula family); PDBTitle: crystal structure of the nucleoside-diphosphate sugar epimerase from2 corynebacterium glutamicum. northeast structural genomics consortium3 target cgr91
99 | d1ujxa_ |
| not modelled | 9.5 | 41 | Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0